mRNA_C-australica_Contig_968.2.1 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A835YRS3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS3_9STRA) HSP 1 Score: 140 bits (354), Expect = 7.960e-39 Identity = 73/116 (62.93%), Postives = 92/116 (79.31%), Query Frame = 2
Query: 20 MRFFVAA--AILATATAFVAPTAPVG--AATRLFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQR--AAKEGN 349
M+F V A A++A A+AFVAP+ P+ + +RLFA GKYDG+ W++ AK+DVLS Y+ +PW ETNFDPYK++ +GNACDPSGYYPG+GKYKDPIRP+ SF EY KQR AAK GN
Sbjct: 1 MKFAVVALLALVAAASAFVAPSVPLAQRSCSRLFAEGKYDGKLWDEAAKQDVLSTYDASKPWGETNFDPYKRDGNGNACDPSGYYPGEGKYKDPIRPSVSFAEYQKQREEAAKAGN 116
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: D7G3Z1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Z1_ECTSI) HSP 1 Score: 113 bits (282), Expect = 7.490e-28 Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 2
Query: 41 AILATATAFVAPTA---------PVG-AATRLFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQRAAKE 343
A+ + A+AFVAP A P +AT +F GKYDG+ W+D AK DV SMYNP+EPWS+ NFDP+ K+ GN CD SGYYPG+ YKDPIRP S+ +YL +A KE
Sbjct: 17 ALASAASAFVAPGAAGRGLTQQQPTRTSATVVFGQGKYDGKLWDDAAKDDVKSMYNPNEPWSDNNFDPFVKDAAGNKCDSSGYYPGETMYKDPIRPAVSYADYLAAKAKKE 127
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A7S3NH85_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NH85_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.820e-24 Identity = 49/104 (47.12%), Postives = 71/104 (68.27%), Query Frame = 2
Query: 20 MRFFVAAAILATATAFVAPTAPVGAATRLFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQR 331
M+F A +L T + F+ T +F GKYDGQ W+ EAK D+ +M++P+ P SETNF+P+++N DGNACDPSG++PGD KYKDP+RP+ + L ++
Sbjct: 4 MKFLTALILLPTISGFMHQTPVSRPVKPIFGAGKYDGQLWDMEAKMDIWNMWDPNSPRSETNFNPFERNNDGNACDPSGWFPGDTKYKDPMRPSMDYAGMLAEK 107
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A7S2CF61_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CF61_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.170e-20 Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 2
Query: 14 NTMRFFVAAAILATATAFVAPTAPVGAATRLFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQRAA 337
N R VA A+LA A+AFV PT + + GKYD Q W+ AK+DV + ++P P S+ NF+P+++N DGNA D SG++PG+ KYKDP+RP SFE + + AA
Sbjct: 2 NFSRVLVALAMLAGASAFVVPTVLRTSVAVKY--GKYDEQLWDIAAKQDVFAAWDPQSPRSDVNFNPFERNADGNAADCSGFFPGEAKYKDPMRPDASFEIMMAENAA 107
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A7S1TN95_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TN95_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.370e-19 Identity = 48/107 (44.86%), Postives = 71/107 (66.36%), Query Frame = 2
Query: 17 TMRF--FVAAAILATATAFVAPTAPVGAATRLFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQR 331
TM++ +AAA+ A AFV AT++ KY GQ W+ EA KDV + ++P+ P +E NF+P++KNKDGN CDP+G++PGDG Y+DPIRP F + + ++
Sbjct: 29 TMKYTAIIAAALFGGANAFVPAATNGRMATKI--NSKYFGQVWDFEAMKDVYNQWDPNAPRTEDNFNPFEKNKDGNQCDPNGWFPGDGLYRDPIRPDVDFMKVMAEQ 133
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A8J2SIU4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIU4_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 2.820e-19 Identity = 50/107 (46.73%), Postives = 69/107 (64.49%), Query Frame = 2
Query: 20 MRFFVAAAILATATAFVAPTAPVGAATRLFAG-GKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQRAA 337
M +AA L +A AF AP A A+ +F G GKY+GQ + KKD+ ++P+ P SETNF+P+++N DGNACD SGY+PG+GKY DP RP F + ++ A
Sbjct: 33 MNRLIAALALGSAAAF-APAARAPASVVVFGGAGKYEGQIFGFPEKKDLWENWDPNSPRSETNFNPFERNADGNACDCSGYFPGEGKYSDPARPDVDFAAMMAEKTA 138
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: B7G965_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G965_PHATC) HSP 1 Score: 90.5 bits (223), Expect = 3.530e-19 Identity = 51/108 (47.22%), Postives = 76/108 (70.37%), Query Frame = 2
Query: 26 FFVAAAILATATAFVAPTAPVGAA--TRLFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQRAAKE 343
FF +++ATA+AF AP GA T LF+GGKY+GQ ++++AKKDV + ++P +P S NF+P++ +GN+ D SG+YPG+G YKDPIR SF++ + +RA E
Sbjct: 5 FFAVLSLVATASAF-APQPSFGARSMTHLFSGGKYEGQLFDNDAKKDVYAAWDPSQPRSPLNFNPFET-WEGNSPDASGFYPGEGGYKDPIRGDVSFQKMMDERAESE 110
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A7S2UVN9_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVN9_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 5.070e-18 Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 2
Query: 86 VGAATRLFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQRA 334
+G A+ ++DGQ W K++ +NPD P SE NF+P+++NKDGN CD SGY+PGD KYKDP RP T F + RA
Sbjct: 25 MGRASSALKMSRFDGQVWGTPQMKEIYDEWNPDLPRSEDNFNPFERNKDGNQCDTSGYFPGDTKYKDPARPDTDFAAMMADRA 107
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A7S2VAU7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAU7_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.400e-17 Identity = 49/114 (42.98%), Postives = 74/114 (64.91%), Query Frame = 2
Query: 14 NTMRFFVAAAILATATAFVAPTAPVGAATRLFAG---GKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQRAAKEG 346
N M+ A A+LA+A+AF AP+ P + GKYDGQEWN +AK+++ + ++P +P S NF+P++ +GN+ D SG+YPG+G+YKDP+RP SF +RA +G
Sbjct: 41 NKMKIVAAFALLASASAF-APSKPAFSRVSTAVNMEYGKYDGQEWNIDAKQEIYAAWDPAQPRSVFNFNPFET-FEGNSPDASGFYPGEGRYKDPVRPDVSFASMQAERAILDG 152
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A7S4IKF6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IKF6_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 8.330e-14 Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = 2
Query: 29 FVAAAILATATAFVAPTAPVGAATR----LFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQRAAKE 343
F + A+A+AF AP A GA+ R F G+YD Q W+ EAKKDV + ++P+ P S NF+P++ +GN+ D SG YPG+ +YKDPIRP T+F++ + +R E
Sbjct: 5 FALVTLAASASAF-AP-ARFGASRRTTAVFFEYGEYDEQLWDSEAKKDVYTKWDPNSPRSTKNFNPFET-FEGNSPDASGIYPGETRYKDPIRPDTNFQQMMIEREEAE 110 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_968.2.1 >prot_C-australica_Contig_968.2.1 ID=prot_C-australica_Contig_968.2.1|Name=mRNA_C-australica_Contig_968.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=111bp MRFFVAAAILATATAFVAPTAPVGAATRLFAGGKYDGQEWNDEAKKDVLSback to top mRNA from alignment at C-australica_Contig_968:1888..3270+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_968.2.1 ID=mRNA_C-australica_Contig_968.2.1|Name=mRNA_C-australica_Contig_968.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1383bp|location=Sequence derived from alignment at C-australica_Contig_968:1888..3270+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_968:1888..3270+ >mRNA_C-australica_Contig_968.2.1 ID=mRNA_C-australica_Contig_968.2.1|Name=mRNA_C-australica_Contig_968.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=333bp|location=Sequence derived from alignment at C-australica_Contig_968:1888..3270+ (Chrysoparadoxa australica CS_1217)back to top |