mRNA_C-australica_Contig_968.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_968.2.1
Unique NamemRNA_C-australica_Contig_968.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A835YRS3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS3_9STRA)

HSP 1 Score: 140 bits (354), Expect = 7.960e-39
Identity = 73/116 (62.93%), Postives = 92/116 (79.31%), Query Frame = 2
Query:   20 MRFFVAA--AILATATAFVAPTAPVG--AATRLFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQR--AAKEGN 349
            M+F V A  A++A A+AFVAP+ P+   + +RLFA GKYDG+ W++ AK+DVLS Y+  +PW ETNFDPYK++ +GNACDPSGYYPG+GKYKDPIRP+ SF EY KQR  AAK GN
Sbjct:    1 MKFAVVALLALVAAASAFVAPSVPLAQRSCSRLFAEGKYDGKLWDEAAKQDVLSTYDASKPWGETNFDPYKRDGNGNACDPSGYYPGEGKYKDPIRPSVSFAEYQKQREEAAKAGN 116          
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: D7G3Z1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Z1_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 7.490e-28
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 2
Query:   41 AILATATAFVAPTA---------PVG-AATRLFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQRAAKE 343
            A+ + A+AFVAP A         P   +AT +F  GKYDG+ W+D AK DV SMYNP+EPWS+ NFDP+ K+  GN CD SGYYPG+  YKDPIRP  S+ +YL  +A KE
Sbjct:   17 ALASAASAFVAPGAAGRGLTQQQPTRTSATVVFGQGKYDGKLWDDAAKDDVKSMYNPNEPWSDNNFDPFVKDAAGNKCDSSGYYPGETMYKDPIRPAVSYADYLAAKAKKE 127          
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A7S3NH85_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NH85_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.820e-24
Identity = 49/104 (47.12%), Postives = 71/104 (68.27%), Query Frame = 2
Query:   20 MRFFVAAAILATATAFVAPTAPVGAATRLFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQR 331
            M+F  A  +L T + F+  T        +F  GKYDGQ W+ EAK D+ +M++P+ P SETNF+P+++N DGNACDPSG++PGD KYKDP+RP+  +   L ++
Sbjct:    4 MKFLTALILLPTISGFMHQTPVSRPVKPIFGAGKYDGQLWDMEAKMDIWNMWDPNSPRSETNFNPFERNNDGNACDPSGWFPGDTKYKDPMRPSMDYAGMLAEK 107          
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A7S2CF61_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CF61_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.170e-20
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 2
Query:   14 NTMRFFVAAAILATATAFVAPTAPVGAATRLFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQRAA 337
            N  R  VA A+LA A+AFV PT    +    +  GKYD Q W+  AK+DV + ++P  P S+ NF+P+++N DGNA D SG++PG+ KYKDP+RP  SFE  + + AA
Sbjct:    2 NFSRVLVALAMLAGASAFVVPTVLRTSVAVKY--GKYDEQLWDIAAKQDVFAAWDPQSPRSDVNFNPFERNADGNAADCSGFFPGEAKYKDPMRPDASFEIMMAENAA 107          
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A7S1TN95_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TN95_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.370e-19
Identity = 48/107 (44.86%), Postives = 71/107 (66.36%), Query Frame = 2
Query:   17 TMRF--FVAAAILATATAFVAPTAPVGAATRLFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQR 331
            TM++   +AAA+   A AFV        AT++    KY GQ W+ EA KDV + ++P+ P +E NF+P++KNKDGN CDP+G++PGDG Y+DPIRP   F + + ++
Sbjct:   29 TMKYTAIIAAALFGGANAFVPAATNGRMATKI--NSKYFGQVWDFEAMKDVYNQWDPNAPRTEDNFNPFEKNKDGNQCDPNGWFPGDGLYRDPIRPDVDFMKVMAEQ 133          
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A8J2SIU4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIU4_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.820e-19
Identity = 50/107 (46.73%), Postives = 69/107 (64.49%), Query Frame = 2
Query:   20 MRFFVAAAILATATAFVAPTAPVGAATRLFAG-GKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQRAA 337
            M   +AA  L +A AF AP A   A+  +F G GKY+GQ +    KKD+   ++P+ P SETNF+P+++N DGNACD SGY+PG+GKY DP RP   F   + ++ A
Sbjct:   33 MNRLIAALALGSAAAF-APAARAPASVVVFGGAGKYEGQIFGFPEKKDLWENWDPNSPRSETNFNPFERNADGNACDCSGYFPGEGKYSDPARPDVDFAAMMAEKTA 138          
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: B7G965_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G965_PHATC)

HSP 1 Score: 90.5 bits (223), Expect = 3.530e-19
Identity = 51/108 (47.22%), Postives = 76/108 (70.37%), Query Frame = 2
Query:   26 FFVAAAILATATAFVAPTAPVGAA--TRLFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQRAAKE 343
            FF   +++ATA+AF AP    GA   T LF+GGKY+GQ ++++AKKDV + ++P +P S  NF+P++   +GN+ D SG+YPG+G YKDPIR   SF++ + +RA  E
Sbjct:    5 FFAVLSLVATASAF-APQPSFGARSMTHLFSGGKYEGQLFDNDAKKDVYAAWDPSQPRSPLNFNPFET-WEGNSPDASGFYPGEGGYKDPIRGDVSFQKMMDERAESE 110          
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A7S2UVN9_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVN9_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.070e-18
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   86 VGAATRLFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQRA 334
            +G A+      ++DGQ W     K++   +NPD P SE NF+P+++NKDGN CD SGY+PGD KYKDP RP T F   +  RA
Sbjct:   25 MGRASSALKMSRFDGQVWGTPQMKEIYDEWNPDLPRSEDNFNPFERNKDGNQCDTSGYFPGDTKYKDPARPDTDFAAMMADRA 107          
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A7S2VAU7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAU7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.400e-17
Identity = 49/114 (42.98%), Postives = 74/114 (64.91%), Query Frame = 2
Query:   14 NTMRFFVAAAILATATAFVAPTAPVGAATRLFAG---GKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQRAAKEG 346
            N M+   A A+LA+A+AF AP+ P  +          GKYDGQEWN +AK+++ + ++P +P S  NF+P++   +GN+ D SG+YPG+G+YKDP+RP  SF     +RA  +G
Sbjct:   41 NKMKIVAAFALLASASAF-APSKPAFSRVSTAVNMEYGKYDGQEWNIDAKQEIYAAWDPAQPRSVFNFNPFET-FEGNSPDASGFYPGEGRYKDPVRPDVSFASMQAERAILDG 152          
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Match: A0A7S4IKF6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IKF6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 8.330e-14
Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = 2
Query:   29 FVAAAILATATAFVAPTAPVGAATR----LFAGGKYDGQEWNDEAKKDVLSMYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEYLKQRAAKE 343
            F    + A+A+AF AP A  GA+ R     F  G+YD Q W+ EAKKDV + ++P+ P S  NF+P++   +GN+ D SG YPG+ +YKDPIRP T+F++ + +R   E
Sbjct:    5 FALVTLAASASAF-AP-ARFGASRRTTAVFFEYGEYDEQLWDSEAKKDVYTKWDPNSPRSTKNFNPFET-FEGNSPDASGIYPGETRYKDPIRPDTNFQQMMIEREEAE 110          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_968.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A835YRS3_9STRA7.960e-3962.93Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
D7G3Z1_ECTSI7.490e-2854.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3NH85_9STRA1.820e-2447.12Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2CF61_9STRA1.170e-2047.22Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1TN95_9STRA1.370e-1944.86Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8J2SIU4_9STRA2.820e-1946.73Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
B7G965_PHATC3.530e-1947.22Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2UVN9_9STRA5.070e-1848.19Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S2VAU7_9STRA1.400e-1742.98Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S4IKF6_9STRA8.330e-1444.04Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_968contigC-australica_Contig_968:1888..3270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr54979
Model size805
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorychloroplast
Exons3
Evalue1.37e-21
EggNOG OGs2E4K9@1|root,2SBFZ@2759|Eukaryota,2XD68@2836|Bacillariophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_000740.1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588833.7838368-UTR-C-australica_Contig_968:1887..19061682588833.7838368-UTR-C-australica_Contig_968:1887..1906Chrysoparadoxa australica CS_1217UTRC-australica_Contig_968 1888..1906 +
1682588833.825323-UTR-C-australica_Contig_968:2817..32701682588833.825323-UTR-C-australica_Contig_968:2817..3270Chrysoparadoxa australica CS_1217UTRC-australica_Contig_968 2818..3270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588833.796917-CDS-C-australica_Contig_968:1906..19761682588833.796917-CDS-C-australica_Contig_968:1906..1976Chrysoparadoxa australica CS_1217CDSC-australica_Contig_968 1907..1976 +
1682588833.8062642-CDS-C-australica_Contig_968:2481..26591682588833.8062642-CDS-C-australica_Contig_968:2481..2659Chrysoparadoxa australica CS_1217CDSC-australica_Contig_968 2482..2659 +
1682588833.815745-CDS-C-australica_Contig_968:2732..28171682588833.815745-CDS-C-australica_Contig_968:2732..2817Chrysoparadoxa australica CS_1217CDSC-australica_Contig_968 2733..2817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_968.2.1prot_C-australica_Contig_968.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_968 1907..2817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_968.2.1

>prot_C-australica_Contig_968.2.1 ID=prot_C-australica_Contig_968.2.1|Name=mRNA_C-australica_Contig_968.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=111bp
MRFFVAAAILATATAFVAPTAPVGAATRLFAGGKYDGQEWNDEAKKDVLS
MYNPDEPWSETNFDPYKKNKDGNACDPSGYYPGDGKYKDPIRPTTSFEEY
LKQRAAKEGN*
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mRNA from alignment at C-australica_Contig_968:1888..3270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_968.2.1 ID=mRNA_C-australica_Contig_968.2.1|Name=mRNA_C-australica_Contig_968.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1383bp|location=Sequence derived from alignment at C-australica_Contig_968:1888..3270+ (Chrysoparadoxa australica CS_1217)
TATCCAGCTGGATAATACAATGAGGTTTTTCGTCGCCGCCGCCATCCTTG CTACTGCCACCGCCTTCGTGGCACCCACTGCCCCTGTTGGTAAGCTCTCT CGTTGCGTCAGGCGAATGGCATTGCCATTCCTCCTACAAATACCAGCGTC CTGGACTCGCATTCATGCACCTCCCCTCCCTTTCCTCCTCCTTGCCTCCC GCTGCTCGAACTGTGAGCCCCAATACCCCCCACCGCGCATGCAGCCCCAC CACCTACCATACATGTCTCCACGTCTCCACACTGAGGTGTTTTCTCTCGG GCCCCATTCCACGCCCACTCTCTCTCCCTCTTATCTTGTCGTGCTGCCTG CTGTTTCTCTCCTTAACCCCACGAGAGCTTAACTTCGCCCAAGAGCTTCT CTCACCCCACGCGCATGAACTACCACTTCTCAACCCGGCTTTCACTGCCC ACCTGGTTGCTAGCTTCAGTGATCTTCAATGCTCTCTGCACTCAGTCCAT GGCCTCCTTTCTTTGACACATACTCCCTCCTCCTCCTCCACCACCACCTG ACAACTGTCAGCTGACCTCCCCCCTCCTCATCTCTCCCTCTCAGGTGCTG CCACCCGACTGTTCGCTGGTGGCAAGTACGACGGCCAGGAATGGAACGAC GAGGCCAAGAAGGATGTTCTGTCCATGTACAACCCCGACGAGCCCTGGTC TGAAACCAACTTCGACCCCTACAAGAAGAACAAGGACGGCAACGCATGCG ATCCTTCAGGATACTACCCAGGGTAGGTCACACATCACAGACAGAAGCGC TGATCCCCGCACCATTTGCTCAACTGGCCCCCTCTTCTTCCTCAGTGACG GCAAATACAAGGACCCAATCCGCCCCACCACCAGCTTTGAGGAGTACCTT AAGCAGCGTGCTGCCAAGGAGGGCAACTAAACTAGTTAGAATAGCCCGCG CGACAGCCACAATGTATTATCACTAGAGCATTTATTGTGCAATACAAACA TACAATAAAAACGGTTTTCGATTCACAACATTGCCTTATAATAATGGGTT CGAATTTTCTCCCTACGAACGTACCCAGTAAATGGGCAGCGAAAAATATA ATGAGCAAGTCAGCGCTCCCTGCATCTCTTTTCTTCCCTTTGATCTTTCC TGTTTTGGTTTTGTCCCCCACAAATCAGCAAAGCAACCCCAGAGACTAGG ATTACTAATGACAGAGTGAATGAATAAAAGAAAAGAGCAATGACTATTGA GGGTATCGTGGGGGCTGTACAACTAACTGCTGTCGTTGCATGTATTAGCC ATATGGGAGCATCGGCAAAGATGGCAACACTACCCCCATTTCTTTCTATG ACCGTCAGGGATTCTCAGGGAGGAAAAATGAAC
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Coding sequence (CDS) from alignment at C-australica_Contig_968:1888..3270+

>mRNA_C-australica_Contig_968.2.1 ID=mRNA_C-australica_Contig_968.2.1|Name=mRNA_C-australica_Contig_968.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=333bp|location=Sequence derived from alignment at C-australica_Contig_968:1888..3270+ (Chrysoparadoxa australica CS_1217)
ATGAGGTTTTTCGTCGCCGCCGCCATCCTTGCTACTGCCACCGCCTTCGT
GGCACCCACTGCCCCTGTTGGTGCTGCCACCCGACTGTTCGCTGGTGGCA
AGTACGACGGCCAGGAATGGAACGACGAGGCCAAGAAGGATGTTCTGTCC
ATGTACAACCCCGACGAGCCCTGGTCTGAAACCAACTTCGACCCCTACAA
GAAGAACAAGGACGGCAACGCATGCGATCCTTCAGGATACTACCCAGGTG
ACGGCAAATACAAGGACCCAATCCGCCCCACCACCAGCTTTGAGGAGTAC
CTTAAGCAGCGTGCTGCCAAGGAGGGCAACTAA
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