mRNA_C-australica_Contig_967.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_967.1.1
Unique NamemRNA_C-australica_Contig_967.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_967.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_967contigC-australica_Contig_967:633..2486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1211
Hectar predicted targeting categoryother localisation
Exons5
Cds size1209
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588832.86425-CDS-C-australica_Contig_967:632..8421682588832.86425-CDS-C-australica_Contig_967:632..842Chrysoparadoxa australica CS_1217CDSC-australica_Contig_967 633..842 +
1682588832.872296-CDS-C-australica_Contig_967:1086..15421682588832.872296-CDS-C-australica_Contig_967:1086..1542Chrysoparadoxa australica CS_1217CDSC-australica_Contig_967 1087..1542 +
1682588832.8801203-CDS-C-australica_Contig_967:1637..17911682588832.8801203-CDS-C-australica_Contig_967:1637..1791Chrysoparadoxa australica CS_1217CDSC-australica_Contig_967 1638..1791 +
1682588832.8877668-CDS-C-australica_Contig_967:1916..22411682588832.8877668-CDS-C-australica_Contig_967:1916..2241Chrysoparadoxa australica CS_1217CDSC-australica_Contig_967 1917..2241 +
1682588832.8953822-CDS-C-australica_Contig_967:2420..24841682588832.8953822-CDS-C-australica_Contig_967:2420..2484Chrysoparadoxa australica CS_1217CDSC-australica_Contig_967 2421..2484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_967.1.1prot_C-australica_Contig_967.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_967 633..2484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_967.1.1

>prot_C-australica_Contig_967.1.1 ID=prot_C-australica_Contig_967.1.1|Name=mRNA_C-australica_Contig_967.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=403bp
VLHKAVAALPVGQFEARTLVLLYEIACAGLAKKRQAGAPAPAAPVAEPDG
LTPGVDILLRIVQAGSGLPKELHEDAVHFLLRCCRATGGGELQRLALLKA
ARSGLLEGSNIEVSLMVLKCLLESAEELGSGAAAALATELELLKAIFVEL
GRLCSDLELDIERRGWYTLEQGLRHRMDFLWLLFDQLQPCLEPEQVEQLW
RLVVATQHSEQFQNMVFTVLLRLEAGSPHTWHSIAEPFFGWMSSSKKGQG
RLDLARMKRQAFHFFVNCQKSAIDAGCSVESVERGLTALWYMALEAEDDQ
VASDAVGCVCLNGLQRKRAHSRPQNSGGSGDNRDEFILHCMAQLQKAVAG
KDHRVILQCLRLLTCYSTALLDQLRSAGVVVRSHQGSGGGGMPLTINIKG
SGM
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mRNA from alignment at C-australica_Contig_967:633..2486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_967.1.1 ID=mRNA_C-australica_Contig_967.1.1|Name=mRNA_C-australica_Contig_967.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1854bp|location=Sequence derived from alignment at C-australica_Contig_967:633..2486+ (Chrysoparadoxa australica CS_1217)
GTGCTGCACAAGGCGGTGGCTGCCCTGCCAGTGGGGCAGTTTGAGGCCCG
GACGCTGGTGCTGCTGTATGAGATTGCCTGTGCCGGGCTGGCAAAGAAGA
GGCAAGCAGGCGCACCAGCACCAGCAGCACCAGTGGCTGAGCCGGATGGA
TTGACGCCAGGGGTGGACATACTGCTGCGCATTGTGCAAGCCGGCAGCGG
GCTTCCTAAGGTGATTGATGCCCTTTTAGTTGGTAGAGAGAGGGGATTGG
AGCCCTAAAGCGTGGAATGAACAACTTGGGACTGCTTGCAGCCGCTATGC
ATACACCATACGAACTAAAAAAAAGCAGAGCTGAAAGTACCAAAACAATG
ACTGATAACCTATGCAACATGCTGGCTTCTAATCCTTTAAGATGTAGAGT
AAATACGCTTTGCCCACTCTCAGCATCTCTCTCCTCCCCTCTCCTCTCCC
TCAGGAGCTTCATGAAGACGCCGTGCACTTCCTGCTGCGCTGCTGCAGGG
CAACAGGCGGGGGGGAGCTCCAGAGGCTGGCACTGCTCAAGGCGGCCAGG
TCCGGGCTGCTGGAAGGCAGCAACATAGAGGTCAGCCTCATGGTGCTCAA
GTGCCTGCTGGAGTCTGCGGAGGAGCTCGGCAGCGGTGCTGCTGCTGCGT
TGGCCACGGAGCTCGAGCTGCTGAAAGCTATATTCGTGGAGCTGGGCCGG
CTGTGCTCAGACCTTGAGCTTGACATTGAGAGGCGGGGGTGGTACACTCT
GGAGCAGGGCCTCAGGCACCGGATGGACTTCCTGTGGCTGCTGTTTGACC
AGCTGCAACCGTGCTTGGAGCCGGAGCAGGTGGAGCAGCTCTGGCGATTG
GTGGTGGCGACGCAGCACAGCGAGCAGTTCCAGAACATGGTCTTCACGGT
GCTGCTACGGGTAGGGAAAGAGCGCTGCCAGGCAGGCCAGATGCATGAGA
AAACAACTTTTGCGCTCCCCTCATCTCACCTGCTGGCTGCTCCCCCTCAT
CTCAGCTGGAGGCGGGGAGCCCACACACCTGGCACTCCATTGCGGAGCCA
TTCTTTGGATGGATGTCGTCCAGCAAGAAGGGCCAGGGGAGGCTGGACCT
CGCCAGAATGAAGCGCCAGGCCTTCCACTTCTTTGTCAACTGCCAAAAGT
CGGCTATAGGTCGGTCCAACTCCTTTCTCTCCTGTCACGCATTTAATTTT
CCTTTTTTCATTATTAAGATTATATTAATTTTTAAAATTGAAATAGCTTG
ACAAGCCGATCCTCCCCTCCTCTTTCACCTCCAGACGCCGGCTGCTCAGT
GGAGTCGGTGGAGCGCGGCCTCACTGCCCTCTGGTACATGGCCCTGGAGG
CTGAGGACGACCAAGTGGCCAGTGATGCAGTGGGCTGCGTCTGCCTTAAT
GGGCTCCAGCGCAAAAGGGCTCACAGCCGGCCACAGAACTCTGGTGGCTC
TGGTGACAACAGGGACGAGTTCATATTGCACTGCATGGCCCAGCTGCAGA
AGGCTGTTGCCGGCAAGGACCACCGAGTGATTCTGCAGTGCCTGCGTCTT
CTCACCTGTTATTCCACCGCGCTGCTCGACCAGCTGAGGTCCGCTGGGGT
GGTTGTGAGGTAAGCAAAGCCTAACTGAGCTGAGCTGAGCTGAGCTAAGC
TGCCTTTGTGTGTGCTGGTGTGTGCTCTGTTCAAGTTTCGTTTCGTTTTA
CTTGATGTGCTGCCTTTGTCTTTGTTGGCTATGTGCTCTGCTTGAGTTAC
AGCTAACTTATCGGTCAGCTTTCTTTCCACTGAAATAGGAGCCACCAGGG
CAGCGGAGGAGGGGGGATGCCGCTTACCATCAATATCAAAGGCAGCGGCA
TGGC
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Coding sequence (CDS) from alignment at C-australica_Contig_967:633..2486+

>mRNA_C-australica_Contig_967.1.1 ID=mRNA_C-australica_Contig_967.1.1|Name=mRNA_C-australica_Contig_967.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1209bp|location=Sequence derived from alignment at C-australica_Contig_967:633..2486+ (Chrysoparadoxa australica CS_1217)
GTGCTGCACAAGGCGGTGGCTGCCCTGCCAGTGGGGCAGTTTGAGGCCCG
GACGCTGGTGCTGCTGTATGAGATTGCCTGTGCCGGGCTGGCAAAGAAGA
GGCAAGCAGGCGCACCAGCACCAGCAGCACCAGTGGCTGAGCCGGATGGA
TTGACGCCAGGGGTGGACATACTGCTGCGCATTGTGCAAGCCGGCAGCGG
GCTTCCTAAGGAGCTTCATGAAGACGCCGTGCACTTCCTGCTGCGCTGCT
GCAGGGCAACAGGCGGGGGGGAGCTCCAGAGGCTGGCACTGCTCAAGGCG
GCCAGGTCCGGGCTGCTGGAAGGCAGCAACATAGAGGTCAGCCTCATGGT
GCTCAAGTGCCTGCTGGAGTCTGCGGAGGAGCTCGGCAGCGGTGCTGCTG
CTGCGTTGGCCACGGAGCTCGAGCTGCTGAAAGCTATATTCGTGGAGCTG
GGCCGGCTGTGCTCAGACCTTGAGCTTGACATTGAGAGGCGGGGGTGGTA
CACTCTGGAGCAGGGCCTCAGGCACCGGATGGACTTCCTGTGGCTGCTGT
TTGACCAGCTGCAACCGTGCTTGGAGCCGGAGCAGGTGGAGCAGCTCTGG
CGATTGGTGGTGGCGACGCAGCACAGCGAGCAGTTCCAGAACATGGTCTT
CACGGTGCTGCTACGGCTGGAGGCGGGGAGCCCACACACCTGGCACTCCA
TTGCGGAGCCATTCTTTGGATGGATGTCGTCCAGCAAGAAGGGCCAGGGG
AGGCTGGACCTCGCCAGAATGAAGCGCCAGGCCTTCCACTTCTTTGTCAA
CTGCCAAAAGTCGGCTATAGACGCCGGCTGCTCAGTGGAGTCGGTGGAGC
GCGGCCTCACTGCCCTCTGGTACATGGCCCTGGAGGCTGAGGACGACCAA
GTGGCCAGTGATGCAGTGGGCTGCGTCTGCCTTAATGGGCTCCAGCGCAA
AAGGGCTCACAGCCGGCCACAGAACTCTGGTGGCTCTGGTGACAACAGGG
ACGAGTTCATATTGCACTGCATGGCCCAGCTGCAGAAGGCTGTTGCCGGC
AAGGACCACCGAGTGATTCTGCAGTGCCTGCGTCTTCTCACCTGTTATTC
CACCGCGCTGCTCGACCAGCTGAGGTCCGCTGGGGTGGTTGTGAGGAGCC
ACCAGGGCAGCGGAGGAGGGGGGATGCCGCTTACCATCAATATCAAAGGC
AGCGGCATG
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