mRNA_C-australica_Contig_966.8.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_966.8.1
Unique NamemRNA_C-australica_Contig_966.8.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_966.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_966contigC-australica_Contig_966:13792..14288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size298
Hectar predicted targeting categoryother localisation
Exons4
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588831.5951388-CDS-C-australica_Contig_966:13793..138221682588831.5951388-CDS-C-australica_Contig_966:13793..13822Chrysoparadoxa australica CS_1217CDSC-australica_Contig_966 13794..13822 -
1682588831.6056616-CDS-C-australica_Contig_966:13885..139391682588831.6056616-CDS-C-australica_Contig_966:13885..13939Chrysoparadoxa australica CS_1217CDSC-australica_Contig_966 13886..13939 -
1682588831.6154997-CDS-C-australica_Contig_966:14009..140911682588831.6154997-CDS-C-australica_Contig_966:14009..14091Chrysoparadoxa australica CS_1217CDSC-australica_Contig_966 14010..14091 -
1682588831.6256313-CDS-C-australica_Contig_966:14159..142881682588831.6256313-CDS-C-australica_Contig_966:14159..14288Chrysoparadoxa australica CS_1217CDSC-australica_Contig_966 14160..14288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_966.8.1prot_C-australica_Contig_966.8.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_966 13794..14288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_966.8.1

>prot_C-australica_Contig_966.8.1 ID=prot_C-australica_Contig_966.8.1|Name=mRNA_C-australica_Contig_966.8.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=98bp
RLKRSSGWKGASAMASVREVLAPLFSQPNSFSALIRELFAAFEASFSEAS
NLVVIAVPEQGERWSDALAAGIAAEARAGYLCLEAINAADIETGGEHD
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mRNA from alignment at C-australica_Contig_966:13792..14288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_966.8.1 ID=mRNA_C-australica_Contig_966.8.1|Name=mRNA_C-australica_Contig_966.8.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=497bp|location=Sequence derived from alignment at C-australica_Contig_966:13792..14288- (Chrysoparadoxa australica CS_1217)
CGGTTGAAGAGAAGCAGCGGTTGGAAGGGAGCCTCAGCCATGGCAAGCGT
TCGGGAAGTCCTGGCGCCCCTGTTCAGCCAGCCCAACTCTTTCTCTGCAC
TTATAAGGGAGCTATTTGCAGCATTTGAGGTGAAGCACTCAAGCTTGGCC
TTCCCAGCATATCATCCCCACCTTTTATCACTCTTCCTCCTCTCCAGGCC
AGTTTCTCTGAAGCCAGCAACCTTGTGGTGATTGCTGTCCCAGAACAAGG
GGAAAGATGGAGTGATGCATTGGCGGCCGGTCAGTAGTAGCACGTCAATT
TTATTTAGAACAAGCTCTTTTCTCATATTATTCCCCCTCGCTCCCGCAGG
CATAGCTGCAGAGGCAAGGGCAGGATATCTTTGCCTGGAGGCTATCAACG
CTGGTGGGTGGTGCAGGACATTGACCTTGTTGATCTATCTGGCTTGACCC
CATCATACCTTATCAGCCGACATAGAGACCGGTGGCGAACATGACCC
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Coding sequence (CDS) from alignment at C-australica_Contig_966:13792..14288-

>mRNA_C-australica_Contig_966.8.1 ID=mRNA_C-australica_Contig_966.8.1|Name=mRNA_C-australica_Contig_966.8.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=294bp|location=Sequence derived from alignment at C-australica_Contig_966:13792..14288- (Chrysoparadoxa australica CS_1217)
CGGTTGAAGAGAAGCAGCGGTTGGAAGGGAGCCTCAGCCATGGCAAGCGT
TCGGGAAGTCCTGGCGCCCCTGTTCAGCCAGCCCAACTCTTTCTCTGCAC
TTATAAGGGAGCTATTTGCAGCATTTGAGGCCAGTTTCTCTGAAGCCAGC
AACCTTGTGGTGATTGCTGTCCCAGAACAAGGGGAAAGATGGAGTGATGC
ATTGGCGGCCGGCATAGCTGCAGAGGCAAGGGCAGGATATCTTTGCCTGG
AGGCTATCAACGCTGCCGACATAGAGACCGGTGGCGAACATGAC
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