mRNA_C-australica_Contig_966.7.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_966.7.1
Unique NamemRNA_C-australica_Contig_966.7.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_966.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_966contigC-australica_Contig_966:12474..13691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LJY7
PFAMsPP2C
Model size675
Max annot lvl2759|Eukaryota
KEGG koko:K01102
Hectar predicted targeting categoryother localisation
Exons8
Evalue4.76e-11
EggNOG OGsCOG0631@1|root,KOG0700@2759|Eukaryota
EC3.1.3.43
Descriptionprotein serine/threonine phosphatase activity
Cds size675
COG categoryT
BRITEko00000,ko01000,ko01009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_966.7.1prot_C-australica_Contig_966.7.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_966 12474..13691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588831.4801223-CDS-C-australica_Contig_966:12473..125781682588831.4801223-CDS-C-australica_Contig_966:12473..12578Chrysoparadoxa australica CS_1217CDSC-australica_Contig_966 12474..12578 -
1682588831.493311-CDS-C-australica_Contig_966:12669..127211682588831.493311-CDS-C-australica_Contig_966:12669..12721Chrysoparadoxa australica CS_1217CDSC-australica_Contig_966 12670..12721 -
1682588831.5034516-CDS-C-australica_Contig_966:12802..128881682588831.5034516-CDS-C-australica_Contig_966:12802..12888Chrysoparadoxa australica CS_1217CDSC-australica_Contig_966 12803..12888 -
1682588831.5204432-CDS-C-australica_Contig_966:12966..130161682588831.5204432-CDS-C-australica_Contig_966:12966..13016Chrysoparadoxa australica CS_1217CDSC-australica_Contig_966 12967..13016 -
1682588831.535358-CDS-C-australica_Contig_966:13093..132421682588831.535358-CDS-C-australica_Contig_966:13093..13242Chrysoparadoxa australica CS_1217CDSC-australica_Contig_966 13094..13242 -
1682588831.5455942-CDS-C-australica_Contig_966:13312..133801682588831.5455942-CDS-C-australica_Contig_966:13312..13380Chrysoparadoxa australica CS_1217CDSC-australica_Contig_966 13313..13380 -
1682588831.5555081-CDS-C-australica_Contig_966:13455..135531682588831.5555081-CDS-C-australica_Contig_966:13455..13553Chrysoparadoxa australica CS_1217CDSC-australica_Contig_966 13456..13553 -
1682588831.5656364-CDS-C-australica_Contig_966:13624..136911682588831.5656364-CDS-C-australica_Contig_966:13624..13691Chrysoparadoxa australica CS_1217CDSC-australica_Contig_966 13625..13691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_966.7.1

>prot_C-australica_Contig_966.7.1 ID=prot_C-australica_Contig_966.7.1|Name=mRNA_C-australica_Contig_966.7.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=225bp
QLTKQLLPPGKEVLLTSAWVDRGHYLKAAAELVEVCGGRVIGIASIRFAA
TPCTQVLSSRYQVHARSMPQENAPSLKSRTSNEMHLVASQRAEGSPSHSS
SPPPPVAIAVARRKRPRQPSRTVQAEAGQLQVELAYPGGEEGQLAGESEH
VREEDPVTLRGGDVQPEQNKRINSAAAARLKLSHRIAVYEANDPSEDRHT
EVIREDIGIHLYAVFDGGSLITVN*
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mRNA from alignment at C-australica_Contig_966:12474..13691-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_966.7.1 ID=mRNA_C-australica_Contig_966.7.1|Name=mRNA_C-australica_Contig_966.7.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1218bp|location=Sequence derived from alignment at C-australica_Contig_966:12474..13691- (Chrysoparadoxa australica CS_1217)
CAGCTAACCAAGCAGCTACTGCCACCTGGGAAAGAGGTGCTTTTGACATC
GGCTTGGGTTGATCGAGGTGGGTGCCACTGCTATCCTATCCTTGCAATCA
CAACAACCTCCTAAACTCCTAAACTCCTTACCACCTAGGCCACTACTTGA
AGGCTGCTGCTGAGCTTGTAGAGGTTTGTGGGGGTAGAGTAATCGGGATA
GCCTCCATCAGATTCGCAGCAACCCCTTGCACCCAGGTAGGTTGGCAAGC
TCTCTTGGATCTTGTGTACTGGCAATGCACGTAACACCAGGCGTTGCCTT
CAACATGGCAGGTGCTGAGCAGTAGATACCAAGTGCATGCAAGAAGCATG
CCACAAGAGAATGCACCGAGCTTGAAGAGGTGGGCTTGTGCCGCTACTAC
TCCTCTCCAAGTGCCACCATTAAGACCTTTCCCCTCCCTTCCTCTATAGC
CGCACTAGCAATGAGATGCATCTTGTTGCCAGCCAACGCGCTGAGGGGTC
TCCCTCTCATTCTTCTTCTCCTCCTCCTCCCGTTGCCATTGCCGTGGCAA
GGAGGAAAAGGCCAAGGCAGCCTTCACGGACTGTTCAGGCTGAAGCAGGT
GAGCTAGCAGTCACTCACCTCCTCCTACGCAGCCTAACAGCACTCTTTGA
CTTGTTTGGCTTCTTTGCCTTTCAGGCCAGTTGCAAGTTGAGCTGGCGTA
TCCAGGAGGAGAGGAGGGTCAATTGGTGAGCCCGAGCTGAGCTTTTTCTT
TTCCTTTCTTTTCTTTCACTTGAATTCACGCCCAGTTCACTTCACATATG
CAGGCGGGGGAATCAGAGCATGTTAGAGAAGAAGATCCTGTTACTTTGAG
AGGGGGAGATGTGCAGCCAGAACAGAACAAGCGGATAAAGTATGTTAACT
GCTCTAAACTGCTCCTAGCAGCAGTATTTCAGCCCCTCCTCAAGCTTTCC
TTTCATTCACACCCTCCCAGCTCTGCAGCGGCTGCCCGTCTCAAGCTTTC
TCACAGGATAGCCGTATATGAAGTGAGTCAGCACGCTAAGCACTGCTTTC
TTTCACTTGCTCTGCCTCATCACTGAGCCACCTTACAACTCCTGCTGTAC
TGTACATCTATAGGCCAATGACCCGAGTGAAGACAGGCACACCGAGGTCA
TCAGGGAAGACATTGGCATTCATCTGTATGCAGTGTTTGATGGTGGGTCT
TTAATAACAGTCAATTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_966:12474..13691-

>mRNA_C-australica_Contig_966.7.1 ID=mRNA_C-australica_Contig_966.7.1|Name=mRNA_C-australica_Contig_966.7.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=675bp|location=Sequence derived from alignment at C-australica_Contig_966:12474..13691- (Chrysoparadoxa australica CS_1217)
CAGCTAACCAAGCAGCTACTGCCACCTGGGAAAGAGGTGCTTTTGACATC
GGCTTGGGTTGATCGAGGCCACTACTTGAAGGCTGCTGCTGAGCTTGTAG
AGGTTTGTGGGGGTAGAGTAATCGGGATAGCCTCCATCAGATTCGCAGCA
ACCCCTTGCACCCAGGTGCTGAGCAGTAGATACCAAGTGCATGCAAGAAG
CATGCCACAAGAGAATGCACCGAGCTTGAAGAGCCGCACTAGCAATGAGA
TGCATCTTGTTGCCAGCCAACGCGCTGAGGGGTCTCCCTCTCATTCTTCT
TCTCCTCCTCCTCCCGTTGCCATTGCCGTGGCAAGGAGGAAAAGGCCAAG
GCAGCCTTCACGGACTGTTCAGGCTGAAGCAGGCCAGTTGCAAGTTGAGC
TGGCGTATCCAGGAGGAGAGGAGGGTCAATTGGCGGGGGAATCAGAGCAT
GTTAGAGAAGAAGATCCTGTTACTTTGAGAGGGGGAGATGTGCAGCCAGA
ACAGAACAAGCGGATAAACTCTGCAGCGGCTGCCCGTCTCAAGCTTTCTC
ACAGGATAGCCGTATATGAAGCCAATGACCCGAGTGAAGACAGGCACACC
GAGGTCATCAGGGAAGACATTGGCATTCATCTGTATGCAGTGTTTGATGG
TGGGTCTTTAATAACAGTCAATTAA
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