mRNA_C-australica_Contig_1051.4.3 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1051.4.3 vs. uniprot
Match: A0A836CR66_9STRA (Er lumen protein retaining receptor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR66_9STRA) HSP 1 Score: 323 bits (828), Expect = 5.010e-98 Identity = 151/222 (68.02%), Postives = 188/222 (84.68%), Query Frame = -2
Query: 227 KETCQGGAFKTLYLYVVVFGSRLVSILRHEGYLPYDRSGDFVYHIAEITSGLLAVLALFFMHTKFARSYQK-VDSFGNLHLPNEWGLLYLLIPCTVVAVFVHPSLNNDFVSDTAWTLSMYLESCALVPQLYMFQRQA--KGIVEVLVSHCVFALGFARVLDMVFWLYSYHELSDASGNKTVGVFVLGTQFVHIAVMGDFFYYYFISLKTGDMMQLPMQASIV 883
K+ +G + KTL +YV+VF RLVSILRHEGYLPYD+SGDF+YH AE+ S LA LF+MHT+F RSYQ+ D+FG++ LP+ G LY+++PC V+AV +HP+LNNDF+SDT WTLSMY+E+CA++PQLYMFQR A KG+VEVLVSH VFALGFARVLDM+FWLYSYHELSDA+G+K+VG+ VL TQF+HIA+MGDFFYYY IS+KTG MQLP+ AS+V
Sbjct: 74 KQHAKGVSRKTLEMYVLVFFPRLVSILRHEGYLPYDKSGDFIYHAAEMLSMALAAACLFYMHTRFERSYQRDYDTFGSVGLPSHLGTLYMIVPCVVLAVLLHPTLNNDFISDTTWTLSMYMETCAIIPQLYMFQRSAANKGVVEVLVSHSVFALGFARVLDMIFWLYSYHELSDAAGSKSVGMLVLATQFIHIAIMGDFFYYYLISIKTGKAMQLPISASMV 295
BLAST of mRNA_C-australica_Contig_1051.4.3 vs. uniprot
Match: A0A835ZJ22_9STRA (Er lumen protein retaining receptor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ22_9STRA) HSP 1 Score: 322 bits (826), Expect = 9.670e-98 Identity = 154/222 (69.37%), Postives = 187/222 (84.23%), Query Frame = -2
Query: 227 KETCQGGAFKTLYLYVVVFGSRLVSILRHEGYLPYDRSGDFVYHIAEITSGLLAVLALFFMHTKFARSYQK-VDSFGNLHLPNEWGLLYLLIPCTVVAVFVHPSLNNDFVSDTAWTLSMYLESCALVPQLYMFQRQA--KGIVEVLVSHCVFALGFARVLDMVFWLYSYHELSDASGNKTVGVFVLGTQFVHIAVMGDFFYYYFISLKTGDMMQLPMQASIV 883
K+ +G + KTL LYV VF RLVSI RHEGYLPYD+SGDF+YH AE S + A+L L FMHT FARSYQ+ D+FGN+++P +G LY+++PC V+AV HP+LNNDF+SDT WTLSMY+E+CA+VPQL+MFQR A KG+VEVLVSH VFALGFARVLDMVFWLYSYHELSDA+G+K+VG+ VL TQF+HIA+MGDFFYYYFIS+KTG MQLP+ AS+V
Sbjct: 74 KKHAKGVSRKTLELYVFVFLPRLVSIFRHEGYLPYDKSGDFIYHAAEGLSLVGALLCLVFMHTSFARSYQRDYDTFGNIYIPARFGTLYMIVPCVVMAVLFHPTLNNDFISDTTWTLSMYMETCAIVPQLFMFQRSAVNKGVVEVLVSHSVFALGFARVLDMVFWLYSYHELSDAAGSKSVGMLVLATQFIHIAIMGDFFYYYFISIKTGQAMQLPVSASMV 295
BLAST of mRNA_C-australica_Contig_1051.4.3 vs. uniprot
Match: D7FX19_ECTSI (Er lumen protein retaining receptor 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX19_ECTSI) HSP 1 Score: 297 bits (760), Expect = 2.040e-88 Identity = 143/218 (65.60%), Postives = 178/218 (81.65%), Query Frame = -2
Query: 233 KETCQGGAFKTLYLYVVVFGSRLVSILRHEGYLPYDRSGDFVYHIAEITSGLLAVLALFFMHTKFARSYQK-VDSFGNLHLPNEWGLLYLLIPCTVVAVFVHPSLNNDFVSDTAWTLSMYLESCALVPQLYMFQRQAKGIVEVLVSHCVFALGFARVLDMVFWLYSYHELSDASGNKTVGVFVLGTQFVHIAVMGDFFYYYFISLKTGDMMQLPMQAS 883
K+ +G + K+L LY VVF SRLVS+L+HEGYLPYDRSGDFVYH AEI S LAV + + TKF +YQ+ VDSFG LH+P EWG LY+ +PC ++A+ +HP+LN +F+SDTAWT SMYLES A+VPQL+MFQ+QAKGIVEVLV+H FALG ARVLDMVFW++SY EL+ A G+ +VG+FVL +QFVH+ +MGDFFYYY IS+KTG+MMQLP Q S
Sbjct: 73 KKHARGVSMKSLQLYAVVFASRLVSVLQHEGYLPYDRSGDFVYHGAEIASLALAVGCVVLISTKFKSTYQQDVDSFGALHVPTEWGTLYIFVPCLLLAIVMHPNLNKNFLSDTAWTFSMYLESMAIVPQLFMFQKQAKGIVEVLVTHSTFALGLARVLDMVFWMFSYKELTHA-GSNSVGMFVLFSQFVHVVIMGDFFYYYAISVKTGNMMQLPSQLS 289
BLAST of mRNA_C-australica_Contig_1051.4.3 vs. uniprot
Match: A0A7S2GHT0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHT0_9STRA) HSP 1 Score: 256 bits (654), Expect = 1.130e-73 Identity = 120/217 (55.30%), Postives = 166/217 (76.50%), Query Frame = -2
Query: 227 AFKTLYLYVVVFGSRLVSILRHEGYLPYDRSGDFVYHIAEITSGLLAVLALFFMHTKFARSYQ-KVDSFGNLHLPNEWGLLYLLIPCTVVAVFVHPSLNNDFVSDTAWTLSMYLESCALVPQLYMFQRQAKG----IVEVLVSHCVFALGFARVLDMVFWLYSYHELSDASGNKTVGVFVLGTQFVHIAVMGDFFYYYFISLKTGDMMQLPMQASIV 862
+ KTL Y+VVF RLVSI+RHEGYLPYD SGD+ YH+ E TS + A +A++ + K+ +Y D+FGNL +P+ G+LY+++PC ++AV HP+LN DF+SD +WT SMYLES A++PQLYMFQ+QA G ++EVLVSH VFALGFARV++ FW+ S+HEL +G++ VG VL +QF+H+A+MGDFFY+YF+SL++G MQLP Q+ +V
Sbjct: 72 SLKTLEAYIVVFFWRLVSIMRHEGYLPYDSSGDWFYHVVEFTSLVSACVAVYQLFYKYRGTYDDSKDAFGNLGIPSFLGVLYIVLPCLILAVIFHPNLNKDFISDASWTFSMYLESLAILPQLYMFQKQASGTGSGVIEVLVSHSVFALGFARVVESAFWMSSFHELHSGAGSQFVGWVVLLSQFIHVALMGDFFYFYFLSLQSGTAMQLPTQSGLV 288
BLAST of mRNA_C-australica_Contig_1051.4.3 vs. uniprot
Match: A0A6V2QBA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QBA8_HETAK) HSP 1 Score: 253 bits (645), Expect = 1.850e-72 Identity = 118/220 (53.64%), Postives = 163/220 (74.09%), Query Frame = -2
Query: 233 VHKETCQGGAFKTLYLYVVVFGSRLVSILRHEGYLPYDRSGDFVYHIAEITSGLLAVLALFFMHTKFARSYQKV-DSFGNLHLPNEWGLLYLLIPCTVVAVFVHPSLNNDFVSDTAWTLSMYLESCALVPQLYMFQRQAKGIVEVLVSHCVFALGFARVLDMVFWLYSYHELSDASGNKTVGVFVLGTQFVHIAVMGDFFYYYFISLKTGDMMQLPMQAS 889
+ ++ QG + KTL LY +++ RL +I RHEGYLP+DRSGD+ YH+ E + +L L+ F + FA Y+K D FGNLH+P E+G +YL++PC ++A+ HPSLNN++ SD WT SMYLE+ A++PQLYMFQ+Q +VEVL+SH VFALGFARVLD+VFWL +Y EL+ G+ +L TQF+++A+MGDFFYYYF+S+K+G MQLPM A+
Sbjct: 63 IWTKSSQGVSLKTLELYFLMYLFRLAAIARHEGYLPFDRSGDWFYHMVEFLALVLVGLSGFLIMGPFAARYEKTFDCFGNLHVPPEYGAVYLIVPCFLLALVFHPSLNNEWFSDCCWTFSMYLETVAIMPQLYMFQKQVSRVVEVLISHSVFALGFARVLDLVFWLSTYSELAGKGSTNFSGMLILFTQFINVALMGDFFYYYFLSIKSGTGMQLPMTAA 282
BLAST of mRNA_C-australica_Contig_1051.4.3 vs. uniprot
Match: A0A7S2SS64_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS64_9STRA) HSP 1 Score: 252 bits (643), Expect = 5.620e-72 Identity = 130/282 (46.10%), Postives = 180/282 (63.83%), Query Frame = -2
Query: 227 PENAQPDWRVVWIFHGSFC-----PLHQ*GWRFLLPYDLCSIHEDVWLC----AVECAHVHKETCQGGAFKTLYLYVVVFGSRLVSILRHEGYLPYDRSGDFVYHIAEITSGLLAVLALFFMHTKFARSYQKV-DSFGNLHLPNEWGLLYLLIPCTVVAVFVHPSLNNDFVSDTAWTLSMYLESCALVPQLYMFQRQAKGIVEVLVSHCVFALGFARVLDMVFWLYSYHELSDASGNKTVGVFVLGTQFVHIAVMGDFFYYYFISLKTGDMMQ-LPMQASIV 1039
P N+ + W+ SF L + F+L Y +W C + + + + KTL YVVVF RL S+LRHEGYLPYDRSGD+ YH+ E TS L A+F ++ +F +Y + D+FG+LH+P ++G++Y+++P ++A+F+ P+LN DF SD AWT SMYLES A++PQLYMF +QA VEVLVSHCVFALGFARV++M FWL+S+HEL+ + + VG VL +QF H+A MGDFFYYYF S++ G M LP + +V
Sbjct: 29 PSNSMV---LAWVAFFSFSFIVYYALSDGDFSFILTYSA------LWRCFAFFLLNFRMLTSNSASSVSLKTLEAYVVVFVFRLASLLRHEGYLPYDRSGDWFYHLVETTSLALVCGAIFLLYFRFRATYDEAKDAFGSLHIPPQYGVVYIIVPAMILAIFLRPNLNKDFFSDAAWTFSMYLESVAILPQLYMFTKQANTPVEVLVSHCVFALGFARVMEMAFWLWSFHELTGHATGRLVGYVVLLSQFFHVAFMGDFFYYYFQSIRWGTPMNVLPTHSGMV 301
BLAST of mRNA_C-australica_Contig_1051.4.3 vs. uniprot
Match: A0A7S4EEV5_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEV5_9STRA) HSP 1 Score: 238 bits (608), Expect = 2.650e-66 Identity = 114/214 (53.27%), Postives = 153/214 (71.50%), Query Frame = -2
Query: 245 KETCQGGAFKTLYLYVVVFGSRLVSILRHEGYLPYDRSGDFVYHIAEITSGLLAVLALFFMHTKFARSYQK-VDSFGNLHLPNEWGLLYLLIPCTVVAVFVHPSLNNDFVSDTAWTLSMYLESCALVPQLYMFQRQAKGIVEVLVSHCVFALGFARVLDMVFWLYSYHELSDASGNKTVGVFVLGTQFVHIAVMGDFFYYYFISLKTGDMMQLP 883
+ G + KTL LY VF RL SI+RHEGYLPYD+SGD++YH E S L+ VLAL+ F +YQ +D FG L +P G +YL +P V+A+ VHP+LN DF+SDTAWT +MYLES AL+PQLYMFQ+Q+ G+VE+L +H VFALGF RV++ +FW+YSYHEL+DASG+K G L +Q V + +M DFF+YY++++K + LP
Sbjct: 147 SQRATGVSIKTLQLYCCVFFFRLTSIIRHEGYLPYDKSGDWLYHFVEGMSLLMCVLALYACTVPFKHTYQADLDKFGELMVPTGAGAVYLALPILVLAILVHPNLNADFLSDTAWTYAMYLESAALLPQLYMFQKQSSGVVELLTAHFVFALGFGRVMEFLFWIYSYHELADASGSKLPGYLALFSQAVQLLMMLDFFWYYYLAVKNATPLVLP 360
BLAST of mRNA_C-australica_Contig_1051.4.3 vs. uniprot
Match: A0A7S0SUU4_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUU4_9STRA) HSP 1 Score: 234 bits (598), Expect = 6.960e-66 Identity = 107/215 (49.77%), Postives = 157/215 (73.02%), Query Frame = -2
Query: 245 TCQGGAFKTLYLYVVVFGSRLVSILRHEGYLPYDRSGDFVYHIAEITSGLLAVLALFFMHTKFARSY-QKVDSFGNLHLPNEWGLLYLLIPCTVVAVFVHPSLNNDFVSDTAWTLSMYLESCALVPQLYMFQRQAK---GIVEVLVSHCVFALGFARVLDMVFWLYSYHELSDASGNKTVGVFVLGTQFVHIAVMGDFFYYYFISLKTGDMMQLP 877
T +G + KTL L+++ F RL+SI RH+GYLP+D++GD+ YH+ E+ S L L+L+ ++ +Y +K D FG+L++PNE+G++YL +PC ++A+ HPSLN +++SDT W LSMYLE+ A++PQ+YMFQ+QA G VE L+ H VFALGF+RV ++VFWL S+ EL+D +G++ G VL +Q + +MGDFFYYYF S+ G MQLP
Sbjct: 73 TVKGISLKTLQLFLITFLVRLLSIFRHQGYLPFDKTGDWFYHVVEVISFLCISLSLYAIYIPMISTYDEKYDRFGSLYIPNEFGIVYLAVPCIILAILFHPSLNREWLSDTCWCLSMYLEAVAMIPQIYMFQKQASDQGGFVEALIGHTVFALGFSRVFELVFWLASFRELADLNGSRLPGYIVLISQLGQVVIMGDFFYYYFKSISKGLPMQLP 287
BLAST of mRNA_C-australica_Contig_1051.4.3 vs. uniprot
Match: A0A7S2H0H3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H0H3_9STRA) HSP 1 Score: 236 bits (603), Expect = 1.190e-65 Identity = 111/213 (52.11%), Postives = 153/213 (71.83%), Query Frame = -2
Query: 233 GGAFKTLYLYVVVFGSRLVSILRHEGYLPYDRSGDFVYHIAEITSGLLAVLALFFMHTKFARSYQK-VDSFGNLHLPNEWGLLYLLIPCTVVAVFVHPSLNNDFVSDTAWTLSMYLESCALVPQLYMFQRQAKGIVEVLVSHCVFALGFARVLDMVFWLYSYHELSDASGNKTVGVFVLGTQFVHIAVMGDFFYYYFISLKTGDMMQLPMQAS 868
G + KTL LY +VF RL SI+RHEGYLPYD+SGD++YH+ EI + + AL+ F +YQ D FG +++P+ G +YL +P +VA+F+HP+LN+DF+SD AWT +MYLES ALVPQLYMFQ+QA G+VE+L +H V ALGF RVL+ FW+YSYHEL+ ++G+K G + +QFV + +M DFFYYY++++K M LP S
Sbjct: 149 GVSIKTLQLYSMVFFFRLTSIIRHEGYLPYDKSGDWLYHVIEIMALIFTSSALYGCMFPFKSTYQADADKFGEINVPSGLGAVYLAVPVLLVALFIHPNLNSDFLSDVAWTYAMYLESVALVPQLYMFQKQATGVVELLTAHFVAALGFGRVLEFAFWIYSYHELASSNGSKLPGYLAILSQFVQLVLMLDFFYYYYVAVKNATPMVLPSHTS 361
BLAST of mRNA_C-australica_Contig_1051.4.3 vs. uniprot
Match: A0A7S2UQ71_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQ71_9STRA) HSP 1 Score: 233 bits (595), Expect = 1.220e-64 Identity = 107/214 (50.00%), Postives = 154/214 (71.96%), Query Frame = -2
Query: 230 GGAFKTLYLYVVVFGSRLVSILRHEGYLPYDRSGDFVYHIAEITSGLLAVLALFFMHTKFARSYQK-VDSFGNLHLPNEWGLLYLLIPCTVVAVFVHPSLNNDFVSDTAWTLSMYLESCALVPQLYMFQRQAKGIVEVLVSHCVFALGFARVLDMVFWLYSYHELSDASGNKTVGVFVLGTQFVHIAVMGDFFYYYFISLKTGDMMQLPMQASI 868
G + K+L LY +VF RL SI+RHEGYLPYD+SGD+VYHI E+ + + AL+ F ++YQ D FG L++P +G +Y+ P V+A+F+HPSLNNDF+SD AWT +MYLES AL+PQLYMFQ+Q G+VE+L +H V ALGF R+L+ +FW+YSYHEL+ ++G+K G L +QF+ + +M DFF+YY++++K + LP + +
Sbjct: 144 GVSIKSLQLYCIVFVCRLTSIIRHEGYLPYDKSGDWVYHIIELMALVFTAAALWACMGPFKQTYQSDFDKFGELNVPPGYGAVYIAGPVLVIALFIHPSLNNDFLSDVAWTYAMYLESVALIPQLYMFQKQTSGVVELLTAHFVAALGFGRLLEFLFWIYSYHELASSAGSKLPGYLALFSQFMQLVLMLDFFWYYYLAVKNATPLVLPSHSGM 357 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1051.4.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1051.4.3 >prot_C-australica_Contig_1051.4.3 ID=prot_C-australica_Contig_1051.4.3|Name=mRNA_C-australica_Contig_1051.4.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=409bp MDLDFGRSSKKLQQEQERRRSEAKRRINEERAAAEIARKRNAELEEQIRIback to top mRNA from alignment at C-australica_Contig_1051:9082..16055+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1051.4.3 ID=mRNA_C-australica_Contig_1051.4.3|Name=mRNA_C-australica_Contig_1051.4.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=6974bp|location=Sequence derived from alignment at C-australica_Contig_1051:9082..16055+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1051:9082..16055+ >mRNA_C-australica_Contig_1051.4.3 ID=mRNA_C-australica_Contig_1051.4.3|Name=mRNA_C-australica_Contig_1051.4.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1227bp|location=Sequence derived from alignment at C-australica_Contig_1051:9082..16055+ (Chrysoparadoxa australica CS_1217)back to top |