mRNA_C-australica_Contig_105.19.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_105.19.1
Unique NamemRNA_C-australica_Contig_105.19.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_105.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_105contigC-australica_Contig_105:49892..51287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size598
Hectar predicted targeting categoryother localisation
Exons5
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586786.0938613-CDS-C-australica_Contig_105:49891..501371682586786.0938613-CDS-C-australica_Contig_105:49891..50137Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 49892..50137 +
1682586786.1029637-CDS-C-australica_Contig_105:50322..503831682586786.1029637-CDS-C-australica_Contig_105:50322..50383Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 50323..50383 +
1682586786.1111722-CDS-C-australica_Contig_105:50567..507311682586786.1111722-CDS-C-australica_Contig_105:50567..50731Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 50568..50731 +
1682586786.119901-CDS-C-australica_Contig_105:50846..509361682586786.119901-CDS-C-australica_Contig_105:50846..50936Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 50847..50936 +
1682586786.1287131-CDS-C-australica_Contig_105:51251..512871682586786.1287131-CDS-C-australica_Contig_105:51251..51287Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 51252..51287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_105.19.1prot_C-australica_Contig_105.19.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_105 49892..51287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_105.19.1

>prot_C-australica_Contig_105.19.1 ID=prot_C-australica_Contig_105.19.1|Name=mRNA_C-australica_Contig_105.19.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=199bp
PPQGSASDAFGAPPQASAADAFGAPPQASAADAFGAPPQTADDEACRAAS
QRQPKLGSFSQPPAVTPAEPAGASSPPYSSPKAGAAAATTRGRSATPPHL
DGGGKKLPNSPQHWSSSPFPSPPLECNAPSSDVAAGTGAFEAAPPVPSMG
GSHPGVPGTSPPLTPSGFDSKSLILAEAASLPLPPQEPLTAESSALPPM
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mRNA from alignment at C-australica_Contig_105:49892..51287+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_105.19.1 ID=mRNA_C-australica_Contig_105.19.1|Name=mRNA_C-australica_Contig_105.19.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1396bp|location=Sequence derived from alignment at C-australica_Contig_105:49892..51287+ (Chrysoparadoxa australica CS_1217)
CCACCTCAAGGATCAGCATCTGATGCATTCGGTGCTCCACCACAAGCTTC
AGCAGCTGATGCATTTGGTGCTCCACCACAGGCTTCGGCAGCTGATGCAT
TTGGTGCTCCACCTCAAACTGCAGATGACGAGGCATGCAGGGCCGCCTCG
CAGCGCCAGCCTAAGCTTGGCAGCTTCAGTCAGCCTCCTGCAGTGACACC
GGCAGAGCCTGCTGGAGCAAGCAGCCCGCCGTACTCTTCGCCAAAGGTGC
AGTCAACCCTACCTTAATCCCCAACCCAAACATGCACAACCATGAGCTGC
CACTGCCGCATTCTGTGACTCGCCAACTCACCACCAGTAGTGAAAGGTGC
TCAGTCTAACTGCCTGGGCTTCTCAACACTCTGGCACTTCACGGCTGAGG
TATTTGCCTGTCTGTCTGCTCCCGTTTGCAGGCTGGTGCTGCTGCAGCAA
CAACTCGAGGGAGAAGCGCAACCCCCCCCCACCTAGATGGAGGTAGCATT
ACCTTGCATTGACGTGATGACCACCCAAATGCTCTATCTAGCATTCCATG
TCTCAGATGCGCTCTAACCCGTGCTCTGGTGCATATAGATGCCTCTTGCA
TGTATTATCAACCAGACCGTATTCTCTTACGTATTGGGACCCACCATTGA
TTACTTCCTCTATGTTTGCTTCTCAGGTGGTAAAAAACTGCCCAACTCTC
CTCAACACTGGTCTTCCTCCCCGTTCCCTTCCCCTCCTCTGGAATGCAAT
GCCCCATCCTCCGATGTTGCTGCTGGCACAGGGGCATTTGAAGCAGCTCC
CCCCGTTCCAAGCATGGGAGGCTCCCATCCGGGTGTGCCAGGGTTTCACC
ACTCAACCCTTCCACCTCAACCTTCATGCACTTGTGTGCCCCTTTAATCG
GTGATGGTAAGAGCCCCCCTCACCAGCCCCCCCTCATCCCTCATGCTCTT
CCCCCGGGACCAGCCCCCCTCTCACCCCATCCGGGTTTGATTCCAAGAGC
CTCATCCTGGCTGAGGCAGCCTCTCTGCCATTGCCCCCTCAAGAGGTGCG
GTGACCCCATAACTTGAATGTACTCTGCAGCCTCAACTTGCGCCTAAATT
GCACCACGTTAAACCCACCAAAGATCTTACCAATCGGCATGCTGCACCCT
TTCTTGCAAGCAGTTAAAGGCTTCCTTCCTGTTCATGACTTGACCTGACT
TGACCTGGGACCTCTGGCAAACCACACCCAAATGACATGACGGCCATCTG
TGTACTTTGTCAGCTTCTCCAACTCCTTTGAAACTGGATTACAAAGCAAC
GCACTTTTGCTGCCCCTGCCCCTGGGCCTAAGTGACTTGCTCTTCATTCC
TTTCCTGCAGCCACTGACTGCTGAGTCCAGTGCATTGCCACCTATG
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Coding sequence (CDS) from alignment at C-australica_Contig_105:49892..51287+

>mRNA_C-australica_Contig_105.19.1 ID=mRNA_C-australica_Contig_105.19.1|Name=mRNA_C-australica_Contig_105.19.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=597bp|location=Sequence derived from alignment at C-australica_Contig_105:49892..51287+ (Chrysoparadoxa australica CS_1217)
CCACCTCAAGGATCAGCATCTGATGCATTCGGTGCTCCACCACAAGCTTC
AGCAGCTGATGCATTTGGTGCTCCACCACAGGCTTCGGCAGCTGATGCAT
TTGGTGCTCCACCTCAAACTGCAGATGACGAGGCATGCAGGGCCGCCTCG
CAGCGCCAGCCTAAGCTTGGCAGCTTCAGTCAGCCTCCTGCAGTGACACC
GGCAGAGCCTGCTGGAGCAAGCAGCCCGCCGTACTCTTCGCCAAAGGCTG
GTGCTGCTGCAGCAACAACTCGAGGGAGAAGCGCAACCCCCCCCCACCTA
GATGGAGGTGGTAAAAAACTGCCCAACTCTCCTCAACACTGGTCTTCCTC
CCCGTTCCCTTCCCCTCCTCTGGAATGCAATGCCCCATCCTCCGATGTTG
CTGCTGGCACAGGGGCATTTGAAGCAGCTCCCCCCGTTCCAAGCATGGGA
GGCTCCCATCCGGGTGTGCCAGGGACCAGCCCCCCTCTCACCCCATCCGG
GTTTGATTCCAAGAGCCTCATCCTGGCTGAGGCAGCCTCTCTGCCATTGC
CCCCTCAAGAGCCACTGACTGCTGAGTCCAGTGCATTGCCACCTATG
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