mRNA_C-australica_Contig_105.18.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_105.18.1
Unique NamemRNA_C-australica_Contig_105.18.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_105.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_105contigC-australica_Contig_105:45820..49613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1175
Hectar predicted targeting categoryother localisation
Exons11
Cds size1173
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_105.18.1prot_C-australica_Contig_105.18.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_105 45820..49612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586785.9712353-CDS-C-australica_Contig_105:45819..458521682586785.9712353-CDS-C-australica_Contig_105:45819..45852Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 45820..45852 +
1682586785.9818692-CDS-C-australica_Contig_105:46014..460931682586785.9818692-CDS-C-australica_Contig_105:46014..46093Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 46015..46093 +
1682586785.990956-CDS-C-australica_Contig_105:46209..462961682586785.990956-CDS-C-australica_Contig_105:46209..46296Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 46210..46296 +
1682586785.9985824-CDS-C-australica_Contig_105:46459..465551682586785.9985824-CDS-C-australica_Contig_105:46459..46555Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 46460..46555 +
1682586786.008303-CDS-C-australica_Contig_105:47044..471551682586786.008303-CDS-C-australica_Contig_105:47044..47155Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 47045..47155 +
1682586786.0169744-CDS-C-australica_Contig_105:47520..476131682586786.0169744-CDS-C-australica_Contig_105:47520..47613Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 47521..47613 +
1682586786.0249703-CDS-C-australica_Contig_105:47852..480441682586786.0249703-CDS-C-australica_Contig_105:47852..48044Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 47853..48044 +
1682586786.0328002-CDS-C-australica_Contig_105:48479..485691682586786.0328002-CDS-C-australica_Contig_105:48479..48569Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 48480..48569 +
1682586786.0428848-CDS-C-australica_Contig_105:48736..487961682586786.0428848-CDS-C-australica_Contig_105:48736..48796Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 48737..48796 +
1682586786.0545762-CDS-C-australica_Contig_105:49072..491591682586786.0545762-CDS-C-australica_Contig_105:49072..49159Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 49073..49159 +
1682586786.0650253-CDS-C-australica_Contig_105:49367..496121682586786.0650253-CDS-C-australica_Contig_105:49367..49612Chrysoparadoxa australica CS_1217CDSC-australica_Contig_105 49368..49612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_105.18.1

>prot_C-australica_Contig_105.18.1 ID=prot_C-australica_Contig_105.18.1|Name=mRNA_C-australica_Contig_105.18.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=391bp
GPVRVVHHPIEEASVRPADAADAAAGEGAGGRSSSSPGYSGWPSSGGQGS
SSLSPPSRGSSASPPPVNVHGFCGDGGCSVTAGYVGAGDKSLSPPCPPGA
AATSPSAPAPAAGSPPLPPQSGLAALAGISQQHAEGYGDLRGISSVASTW
GSCSPTSQARLSPTHEDGEGANGSRAGPAVSVSPPRSARGSAARSRSRTP
PRAVSPAAATQQQSGGWAAQGEQQSGAAMAGIPDDLFGAPARGASPAPEV
SPPRTVDVLGGAPDDLFGAPAASAFSGSSAGQAEAIPEPQLHQVPVSAPP
ADLFGAAPAGSGGFDAPSQAAAAGAFSAPLQASAAGAFSAPPQASAADAF
GAPPQASAADAFGAPPQASAANAFGAPSQASAADAFGAPPQ
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mRNA from alignment at C-australica_Contig_105:45820..49613+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_105.18.1 ID=mRNA_C-australica_Contig_105.18.1|Name=mRNA_C-australica_Contig_105.18.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3794bp|location=Sequence derived from alignment at C-australica_Contig_105:45820..49613+ (Chrysoparadoxa australica CS_1217)
GGTCCAGTTAGGGTGGTGCATCATCCCATTGAGGTGGGTGGGTAGGCTAT
TATATCATTTAGAGGCGGGTTAAAAGGGTCCCATGCTGTGGCGCGGGGAG
CTGTGCAGTGAGGCATATATCACAGCAGGTTATGCCAGCTTAGGAGGGAA
GTGATGACCTGACTGTGACAGCATGCTCAACTCTTCAACTCTCAGGAGGC
ATCGGTGCGGCCTGCTGATGCTGCTGATGCTGCAGCTGGTGAAGGTGCAG
GGGGACGCTCCTCCTCATCCCCAGGTATTTCCCCTGGCATGCAATGAAGC
CTCTCTGACGTCTTACAATCCAGCCTCTGGTATGGACCCCACCCCGCTCC
CGATTGATGGAACGGCGCTTCGGGACTCCAATTATGACAGGTTACTCAGG
CTGGCCAAGCTCTGGAGGACAAGGCAGCTCTTCCCTATCTCCTCCCAGCC
GTGGAAGCTCTGCTTCGCCTCCGCCTGGTGAGATCAAAGCAATCAATCTC
GCCCTCTCCCCTGTTCCTTGCCAATTCTGTGATAAAACAGACTCGCTATG
CCCTGTGGGTGAGGCGTGTTATGGCGTCCCCGTCTAGCACCCTTTAAGCC
TCTCTGACGCCCAACCCCCAACAAACTGCCTCCTTTGCAGTCAATGTGCA
TGGTTTCTGTGGTGACGGGGGATGCAGTGTGACTGCTGGCTATGTGGGCG
CTGGGGACAAGTCACTATCGCCTCCATGTCCGCCAGGTGGAGTTTATATT
ATATGCTTTGTGCTGCATTGACGTTGTGTTACGTGTCATGTGCTATGTGC
TAGTCGCCTCTTGGCCCCTTTTGAACGGCTTCTTGTTGAGCTCTGTACCG
AGCACGCTACAGACTTGGCAGCCCTCAGAGCTGGATGTGCATGTCATGCC
AGTCACCTCAGGACAGTTCGCTGCACATTCCGGCCATTCCTTTGGTTGTC
TTGCTCCGTTTTGTAGGTGTTGTGTTGCTATGTTTTGTAGGTGCTGTCTT
GCTCTATTTTGTAGGTGATCTAGCTCTATTTTGCTGTCGTGGTCTTGCTC
TATTTTGTGGTTGTGGTCTTACTCTGTTTTGTTGTGCCCTCGTTCGTTCA
GCGCATCAACCCCAGCTCTGTAGCGCTCACAGCGCATGGTGCCTGTCTAA
CATACTGCAGCGCATGACATGGGCTCATCGTGCTGAGGCTCAGCTGCTAC
CATGTGTTTGCCCCCGCCCATACAGGTGCAGCTGCCACAAGCCCTTCTGC
TCCAGCTCCTGCTGCAGGCTCGCCTCCGTTGCCTCCCCAGAGCGGACTGG
CTGCTCTTGCGGGGATATCACAGCAGCATGCAGAAGGTGAGTGAACCAAA
ATGAACCAGAATGAAGCGCGAATTGACCCGCCAGTTAGCTTTAGCTGAGT
GTTTGCCTAGCGTCTAGCTTGTCTTTGCCGGTATAGGGCTGCACCACCAT
AGCAGCACTTTAGTAAGGGTTGTGTCAGGGTCGGGTTGCAGAGTCATGCG
CTGACAACGGCTCAGCTGCCCATAAAGGGTTTAAGGCCTTGAAGGCTCTA
AAGGCCTTACTGGTTTATAAAGGGTGACGTTTGTCATGTGCCAGCAATGA
ATGCGTAGAATGCTCGGTGGTGGGCAGCTCATGAGACCCAAGGCGAAAAC
CATCCCGCTCATCTCCTAATCGGAATCATGCTTCCTCCTCTCCCATTCTA
GGTTATGGTGACCTACGAGGCATCTCCAGCGTGGCCAGCACCTGGGGATC
ATGCTCCCCCACGTCCCAGGCCCGTCTCTCCCCAACACATGAAGGTGATC
GGGCTGAAAACCTCCCGCGCAGCGTCTAGCAGCCTTGCTACCTTGCTAAC
TTGGACGCGCACCAGAGAGGCTGGCGTGTTGATTGCATTTTTGGCAGCTG
GAGGAATGGTCTGAGGCAATTGGGACGTGCAAGCAACATTTGCCCCCACA
CATCTCACACTCCCCCTCATCTGACGCTCTCCCCCATCTGACACTCTCCC
TCATCTCACACTCCCCTTAATCCCCACCTGTAGACGGCGAGGGCGCCAAC
GGCTCCAGAGCCGGCCCTGCTGTGAGCGTGAGCCCACCTAGGTCAGCTCG
GGGGTCAGCAGCACGAAGCAGGTCAAGAACACCTCCCAGGGCTGTGAGTC
CTGCAGCAGCAACCCAGCAGCAGTCAGGAGGCTGGGCTGCGCAAGGGGAA
CAGCAGTCGGGTGCTGCCATGGCAGGTGGGTTTGATCCTCTGCCCCCTGC
GTGAGCTGGCTTGACGTTGACTTGACTTGATGCAAGTGCTGTCCTTGCTT
GCAATTGAATTGGTTCAAGTTTGGCACAAGTCTCGGCACGGCCTGATTGG
TTTGATTGGATTAAGTGGTTGAAGTGGTTAGATTGGGTTGATTGGTTAAT
GCTGTTAGATTCGTTTGATTAGCACAATTGGTTTAATCGGTTTGATCGGT
TTGATTGGTTTGATTGGTTTGATCGGTTTGATTGGTTTTTAATTGGTTTA
ACTGGTTTGACATGGGCACTGCAGGATAGTTGTGGGTAGATGTAAGCGGT
AACGGTTCACTGACAGCTGTCCGGACACACTGAAAATGCTCGCACGCTGG
GGGTCCTCTGCTCCCTTTCACCTTGCCAACTGCCTCTGACCTCTAACCCT
TCTTTGCCAGGCATACCCGATGACTTGTTTGGGGCTCCCGCACGTGGCGC
CTCTCCCGCGCCGGAGGTATCGCCTCCTCGAACGGTTGACGTGTTGGGAG
GTAAGGCCACCCACTTATAGAGAGTGAGAAGGACTGTGACTGTGTGCAGG
ATGAGTCATTCGGAGTTAGGCGCATAGACGAGGAGCTCCTTCACACGTCA
TGATATGTTCCCCCCTTCTCCCCCTGACCTTCCATCTGCTATTCCTTCCT
GTCATTTCACACCTCAGGTGCTCCGGATGATTTGTTTGGTGCTCCTGCTG
CCTCTGCATTTAGTGGCAGCTCTGCAGGTTCGCTCGACGTGTAGCTAGCA
CCAACCTGCAAGTCTATGAGCAGTCAATCGGCTGCTGGCATCCTAGATAC
AAACCATGACTCCATCCAAACTGCCCCAAAGCGTCCAAATCAATTGCCTG
GCTTGAAGCCACCTCCACTTTGCTTAGCTACACTCCTTCTTGACTTTCAT
CCTAGCACTAGCCCTTCAGCCTCTTGACGCCAGCTAGTGACCACCAAAGC
TGTATGCACTCTTAATTAATAGACATTAACAATCATTATTTCACCTCTGA
CAGGCCAAGCTGAGGCAATACCTGAGCCCCAGCTGCATCAAGTGCCAGTG
TCGGCGCCCCCGGCTGACCTGTTTGGTGCTGCTCCTGCTGGTATAGCACA
CATCACTCAAGCCCGGTCACCATAGGCTCCCCTACCTTGAGGATGAGTTC
GGCCTGTATACGCTACGGCTATACCAAATGCTGACTTATCTCGCGCTGTA
TGCTGCTCTCATAGCATAGAGTAACACACCATCTTGTTCTGCGTCATCCC
TGTTGTTGCGTTTCGGATGTGTACTGAACGCCTGCTCATCTGCTTTAGGT
TCTGGGGGCTTTGATGCACCGTCTCAAGCTGCAGCAGCTGGTGCATTCAG
TGCTCCACTTCAAGCTTCAGCAGCTGGTGCATTCAGTGCTCCACCTCAAG
CTTCAGCAGCTGATGCATTTGGTGCTCCACCACAAGCTTCAGCAGCTGAT
GCGTTTGGTGCCCCACCACAAGCTTCAGCAGCCAATGCATTCGGTGCTCC
ATCACAGGCTTCAGCAGCTGATGCATTTGGTGCTCCACCTCAGG
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Coding sequence (CDS) from alignment at C-australica_Contig_105:45820..49613+

>mRNA_C-australica_Contig_105.18.1 ID=mRNA_C-australica_Contig_105.18.1|Name=mRNA_C-australica_Contig_105.18.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1173bp|location=Sequence derived from alignment at C-australica_Contig_105:45820..49613+ (Chrysoparadoxa australica CS_1217)
GGTCCAGTTAGGGTGGTGCATCATCCCATTGAGGAGGCATCGGTGCGGCC
TGCTGATGCTGCTGATGCTGCAGCTGGTGAAGGTGCAGGGGGACGCTCCT
CCTCATCCCCAGGTTACTCAGGCTGGCCAAGCTCTGGAGGACAAGGCAGC
TCTTCCCTATCTCCTCCCAGCCGTGGAAGCTCTGCTTCGCCTCCGCCTGT
CAATGTGCATGGTTTCTGTGGTGACGGGGGATGCAGTGTGACTGCTGGCT
ATGTGGGCGCTGGGGACAAGTCACTATCGCCTCCATGTCCGCCAGGTGCA
GCTGCCACAAGCCCTTCTGCTCCAGCTCCTGCTGCAGGCTCGCCTCCGTT
GCCTCCCCAGAGCGGACTGGCTGCTCTTGCGGGGATATCACAGCAGCATG
CAGAAGGTTATGGTGACCTACGAGGCATCTCCAGCGTGGCCAGCACCTGG
GGATCATGCTCCCCCACGTCCCAGGCCCGTCTCTCCCCAACACATGAAGA
CGGCGAGGGCGCCAACGGCTCCAGAGCCGGCCCTGCTGTGAGCGTGAGCC
CACCTAGGTCAGCTCGGGGGTCAGCAGCACGAAGCAGGTCAAGAACACCT
CCCAGGGCTGTGAGTCCTGCAGCAGCAACCCAGCAGCAGTCAGGAGGCTG
GGCTGCGCAAGGGGAACAGCAGTCGGGTGCTGCCATGGCAGGCATACCCG
ATGACTTGTTTGGGGCTCCCGCACGTGGCGCCTCTCCCGCGCCGGAGGTA
TCGCCTCCTCGAACGGTTGACGTGTTGGGAGGTGCTCCGGATGATTTGTT
TGGTGCTCCTGCTGCCTCTGCATTTAGTGGCAGCTCTGCAGGCCAAGCTG
AGGCAATACCTGAGCCCCAGCTGCATCAAGTGCCAGTGTCGGCGCCCCCG
GCTGACCTGTTTGGTGCTGCTCCTGCTGGTTCTGGGGGCTTTGATGCACC
GTCTCAAGCTGCAGCAGCTGGTGCATTCAGTGCTCCACTTCAAGCTTCAG
CAGCTGGTGCATTCAGTGCTCCACCTCAAGCTTCAGCAGCTGATGCATTT
GGTGCTCCACCACAAGCTTCAGCAGCTGATGCGTTTGGTGCCCCACCACA
AGCTTCAGCAGCCAATGCATTCGGTGCTCCATCACAGGCTTCAGCAGCTG
ATGCATTTGGTGCTCCACCTCAG
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