mRNA_C-australica_Contig_1049.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1049.5.1
Unique NamemRNA_C-australica_Contig_1049.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_1049.5.1 vs. uniprot
Match: A0A836CC10_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC10_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.180e-13
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 1 
Query:  451 LL*EGVFVSCARAGDYMTPLHLAVMHGNELAVSSLIELGADVDAVAKDDVLPLGTCHDC--LSKLRPHDTHKRAALERISGLLVENGARLTWRRNQTPQQLALQQKFDGLM 777
            L+  G   S  RAGD+ TPLH AV   +  A ++LI LGADV+AVA+DD +PL TC +    +  +  D  +  A   +  LL+++GA+ TWRR +TP+++  + +F  +M
Sbjct:  181 LVKAGQSASAPRAGDFYTPLHCAVGAASLPAAAALIRLGADVNAVAQDDTMPL-TCAEAELAAAAKAGDGARARACAAVRDLLLDSGAKRTWRRERTPEEVEREARFQDMM 290
[Close]
BLAST of mRNA_C-australica_Contig_1049.5.1 vs. uniprot
Match: W4G748_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G748_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.730e-6
Identity = 38/96 (39.58%), Postives = 50/96 (52.08%), Query Frame = 1 
Query:  472 VSCARAGDYMTPLHLAVMHGNELAVSSLIELGADVDAVAKDDVLPLGTCHDCL-SKLRPHDTHKRAALERISGLLVENGARLTWRRNQTPQQLALQ 756
            V+  R GD  TPLH+A         S L+  GADV+A+A DD++PL     C+ S      T+    +E    LL ++GAR TWRR Q  Q  A Q
Sbjct:  136 VNFQRQGDLFTPLHVACAKNFYGVASLLLLYGADVNAIAADDLMPLNCAERCVASPQNDAMTNSNTLVE----LLKKHGARPTWRRQQPAQVPATQ 227
[Close]
BLAST of mRNA_C-australica_Contig_1049.5.1 vs. uniprot
Match: A0A6A5AFP7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AFP7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.860e-6
Identity = 36/91 (39.56%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:  472 VSCARAGDYMTPLHLAVMHGNELAVSSLIELGADVDAVAKDDVLPLGTCHDCL-SKLRPHDTHKRAALERISGLLVENGARLTWRRNQTPQ 741
            V+  R GD  TPLH+A         S L+  GADV+A+A DD++PL     C+ S      T+    +E    LL ++GAR TWRR Q  Q
Sbjct:   61 VNFQRQGDLFTPLHVACAKNFYGVASLLLLYGADVNAIAADDLMPLNCAERCVASPQNDAMTNSNTLVE----LLKKHGARPTWRRQQPAQ 147
[Close]
BLAST of mRNA_C-australica_Contig_1049.5.1 vs. uniprot
Match: A0A6G0WSI9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSI9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.370e-5
Identity = 41/114 (35.96%), Postives = 58/114 (50.88%), Query Frame = 1 
Query:  472 VSCARAGDYMTPLHLAVMHGNELAVSSLIELGADVDAVAKDDVLPLGTCHDCLSKLRPHDTHKRAALERISGLLVENGARLTWRR-NQTPQQLALQQKFDGLMLEDGVGRVFST 810
            V+  R  D  TPLH+A         S L+  GADV+A+AK+D++PL    +C  ++      K  AL      L + GAR TWRR N++  Q+ +   F  L LE   G + ST
Sbjct:  133 VNFQRKRDLFTPLHVACAKTFLGVASILVMYGADVNAIAKEDLMPL----NCAERVSDEVNDKLVAL------LKDAGARRTWRRQNKSTSQMKIV-SFSSLQLEPQCGLMLST 235
[Close]
BLAST of mRNA_C-australica_Contig_1049.5.1 vs. uniprot
Match: A0A6A3S9Q7_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3S9Q7_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.960e-5
Identity = 34/92 (36.96%), Postives = 47/92 (51.09%), Query Frame = 1 
Query:  451 LL*EGVFVSCARAGDYMTPLHLAVMHGNELAVSSLIELGADVDAVAKDDVLPLGTCHDCLSKLRPHDTHKRAALERISGLLVENGARLTWRR 726
            LL  GV V+  R  D  T LH+A           L+  GADV+A+A DD +PL  C + + +     T ++   E +   L+EN AR TWRR
Sbjct:  124 LLDAGVDVNWQRKSDLYTALHVACCKNLYPIAYLLVLFGADVNAIAVDDAMPLA-CANNIGRTSALSTVEQTQKELLVSFLLENQARATWRR 214
[Close]
BLAST of mRNA_C-australica_Contig_1049.5.1 vs. uniprot
Match: A0A7S3ZYE0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYE0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.750e-5
Identity = 38/115 (33.04%), Postives = 53/115 (46.09%), Query Frame = 1 
Query:  403 CNETGYSACQVMPNGTLL*EG-VFVSCARAGDYMTPLHLAVMHGNELAVSSLIELGADVDAVAKDDVLPLGTCHDCLSKLRPHDTHKRAALERISGLLVENGARLTWRRNQTPQQ 744
            C++T   A  V     L+ +G   V+  R  D+  PLH+  +       + L++ GADV+AVAKDD  PLG C                A   +  +L   GAR TWRR+  P Q
Sbjct:  120 CDDTDGGASVVAAARYLVTQGGADVNKVRRRDWRGPLHICSVRNLHELGAFLVDAGADVNAVAKDDSTPLGLC----------------AEGALMDVLKARGARTTWRRDAEPTQ 218
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1049.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836CC10_9STRA1.180e-1339.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W4G748_9STRA2.730e-639.58Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A5AFP7_9STRA2.860e-639.56Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0WSI9_9STRA1.370e-535.96Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A3S9Q7_9STRA5.960e-536.96Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A7S3ZYE0_9STRA6.750e-533.04Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1049contigC-australica_Contig_1049:12113..13371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LKT8
PFAMsAnk_2,Ank_3
Model size824
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.5e-15
EggNOG OGs2BD6S@1|root,2S11V@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-11_005490.1
DescriptionAnkyrin repeat
Cds size339
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1049.5.1prot_C-australica_Contig_1049.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1049 12184..12657 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586785.4216776-UTR-C-australica_Contig_1049:12112..121831682586785.4216776-UTR-C-australica_Contig_1049:12112..12183Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1049 12113..12183 +
1682586785.4604657-UTR-C-australica_Contig_1049:12657..128381682586785.4604657-UTR-C-australica_Contig_1049:12657..12838Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1049 12658..12838 +
1682586785.470275-UTR-C-australica_Contig_1049:12971..130651682586785.470275-UTR-C-australica_Contig_1049:12971..13065Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1049 12972..13065 +
1682586785.4803493-UTR-C-australica_Contig_1049:13232..133711682586785.4803493-UTR-C-australica_Contig_1049:13232..13371Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1049 13233..13371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586785.4321914-CDS-C-australica_Contig_1049:12183..122161682586785.4321914-CDS-C-australica_Contig_1049:12183..12216Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1049 12184..12216 +
1682586785.441201-CDS-C-australica_Contig_1049:12277..124331682586785.441201-CDS-C-australica_Contig_1049:12277..12433Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1049 12278..12433 +
1682586785.4506426-CDS-C-australica_Contig_1049:12507..126571682586785.4506426-CDS-C-australica_Contig_1049:12507..12657Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1049 12508..12657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1049.5.1

>prot_C-australica_Contig_1049.5.1 ID=prot_C-australica_Contig_1049.5.1|Name=mRNA_C-australica_Contig_1049.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=113bp
MRLEEPAKAEKVMKRGQLLVDLAKEGQLQEIDRITSQCPKEHLLHWFNVH
MCAEAIKAGHYPVVRYMVDRGLDVQNCPALVSCLHWLAALDSPSTPLLIT
LLVEVRSHWLVQ*
back to top

mRNA from alignment at C-australica_Contig_1049:12113..13371+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1049.5.1 ID=mRNA_C-australica_Contig_1049.5.1|Name=mRNA_C-australica_Contig_1049.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1259bp|location=Sequence derived from alignment at C-australica_Contig_1049:12113..13371+ (Chrysoparadoxa australica CS_1217)
GTGTTGGTCGCGAGGCATCCCTCTTCTCATTGGATGAGCGCCTGAAATCA
CAGCTGCGACGGGTAACCCGCATGCGGCTAGAGGAGCCAGCAAAGGCTGA
AAAGGTGCCAGAGGCGATAAGAGATGCTTCCTTTCCCTCCTTTTTCTCAT
CCCGCTCCCGACCAGGTGATGAAGAGAGGTCAACTGCTTGTTGACTTGGC
GAAAGAAGGCCAGCTGCAAGAGATAGACAGAATAACGAGCCAATGTCCCA
AAGAGCACTTGCTTCATTGGTTCAATGTTCACATGTGTGCTGAAGCTATC
AAAGCAGGGCACTACCCTGTGGTAAGGTCAAGGAGCTGAGAAACTGTGAG
TATCTTGTGCTCATCTGTGGTTAATCACGTGCTCTCACTTGACAGGTGCG
GTATATGGTAGACAGGGGCTTGGATGTGCAGAACTGCCCAGCCCTAGTGA
GCTGCTTGCACTGGTTAGCTGCACTTGACAGCCCCTCTACGCCACTGCTG
ATCACACTGCTGGTTGAGGTACGTAGCCATTGGTTGGTGCAATGAGACGG
GATATTCTGCCTGCCAAGTGATGCCTAATGGCACTCTACTTTAGGAAGGT
GTATTTGTGAGCTGTGCTCGAGCAGGTGACTATATGACACCCCTGCACTT
AGCTGTGATGCATGGCAATGAGCTAGCCGTCAGCTCGCTGATTGAGCTAG
GAGCTGATGTTGATGCAGTTGCCAAGGTGGGTTCTTAACTAACACCAAAT
TGATTGGCTTGTTGTGCTCGTCTTTGCCCCTAACCCAGTTATGGCTTATG
CACACTGCTATTGGCTAGACCTGCCAAAGAGACTCACTTACTCACTCCTC
CATTGGAAGGATGATGTCTTGCCTCTTGGAACTTGTCATGACTGCTTATC
AAAACTGCGTCCACATGACACACACAAGCGTGCAGCTTTGGAGCGCATCT
CAGGCAAGTTTCACTCCCAAACCCTCTTGACTTGCTTGCAGATTGGCATT
CTAATCTCCCCGCCAGCTCTCCAACACGTTCAGTCCTTCTCAACATGATC
TTGACTGAGAAACTTGCTCCCACCTATTGCCTCCTATCGCTAAAGTTGGT
CATGCTAATGAATACAACAGGGCTGCTGGTAGAGAACGGTGCAAGGCTGA
CATGGCGGCGCAACCAGACACCACAGCAGCTGGCACTACAACAAAAGTTT
GATGGGCTTATGCTGGAGGACGGGGTAGGGAGGGTATTCAGCACTATGAC
TGCTTGATT
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_1049:12113..13371+

>mRNA_C-australica_Contig_1049.5.1 ID=mRNA_C-australica_Contig_1049.5.1|Name=mRNA_C-australica_Contig_1049.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=339bp|location=Sequence derived from alignment at C-australica_Contig_1049:12113..13371+ (Chrysoparadoxa australica CS_1217)
ATGCGGCTAGAGGAGCCAGCAAAGGCTGAAAAGGTGATGAAGAGAGGTCA
ACTGCTTGTTGACTTGGCGAAAGAAGGCCAGCTGCAAGAGATAGACAGAA
TAACGAGCCAATGTCCCAAAGAGCACTTGCTTCATTGGTTCAATGTTCAC
ATGTGTGCTGAAGCTATCAAAGCAGGGCACTACCCTGTGGTGCGGTATAT
GGTAGACAGGGGCTTGGATGTGCAGAACTGCCCAGCCCTAGTGAGCTGCT
TGCACTGGTTAGCTGCACTTGACAGCCCCTCTACGCCACTGCTGATCACA
CTGCTGGTTGAGGTACGTAGCCATTGGTTGGTGCAATGA
back to top