mRNA_C-australica_Contig_10482.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10482.1.1
Unique NamemRNA_C-australica_Contig_10482.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10482.1.1 vs. uniprot
Match: A0A222E515_9RHOB (Trypsin-like peptidase domain protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E515_9RHOB)

HSP 1 Score: 334 bits (857), Expect = 2.280e-110
Identity = 187/193 (96.89%), Postives = 190/193 (98.45%), Query Frame = 1
Query:   25 VDTGASRRDILRQSQAQLNALGCDAGTPDGIMGPRTREAFRRFLAESDVALKVSDLGTAQALDAIRARSGTVCAPVVVAPKPVSRDA-EPVAAPKPAAPTYSMAGSWRWTATCPLGQATGTTVYRSAGGNSFTGTISGSXXXXXXXXVLSGRNFSGTETFGWVTNSANGTLSADGRSLSLSVSNGCSDSARKN 600
            V+T ASRRDILRQSQAQLNALGCDAGTPDGIMGPRTREAFRRFLAESDVAL+VSDLGTAQALDAIRARSGTVCAPVVVAPKPVSRDA EPVAAPKPAAPTYSMAGSWRWTATCPLGQATGTTVYRSAGGNSFTGTISGSXXXXXXXXVLSGRNFSGTETFGWVTNSANGTLSADGRSL+LSVSNGCS SARKN
Sbjct:  336 VETEASRRDILRQSQAQLNALGCDAGTPDGIMGPRTREAFRRFLAESDVALEVSDLGTAQALDAIRARSGTVCAPVVVAPKPVSRDAAEPVAAPKPAAPTYSMAGSWRWTATCPLGQATGTTVYRSAGGNSFTGTISGSXXXXXXXXVLSGRNFSGTETFGWVTNSANGTLSADGRSLNLSVSNGCSVSARKN 528          
BLAST of mRNA_C-australica_Contig_10482.1.1 vs. uniprot
Match: A0A0B3S0U3_9RHOB (PKD repeat protein n=7 Tax=Mameliella TaxID=1434019 RepID=A0A0B3S0U3_9RHOB)

HSP 1 Score: 246 bits (628), Expect = 4.290e-76
Identity = 130/197 (65.99%), Postives = 150/197 (76.14%), Query Frame = 1
Query:   10 PVAEPVDTGASRRDILRQSQAQLNALGCDAGTPDGIMGPRTREAFRRFLAESDVALKVSDLGTAQALDAIRARSGTVCAPVVVAPKPVSRDAEPVAAPKPAAPTYSMAGSWRWTATCPLGQATGTTVYRSAGGNSFTGTISGSXXXXXXXXVLSGRNFSGTETFGWVTNSANGTLSADGRSLSLSVSNGCSDSARKN 600
            PVAEPVD     RDILRQ+Q+ LN LGCDAGTPDGI GPRTREAFRRFL  +DVAL+  DLGTAQAL+AI+ RSGTVC  VV AP P +          PAAP YSM G+W W+ATCPLG A+GTT YRSAGGN+FTGTI+G+         L+GR++S TETFGWVTN+A+GTLS DGRSLS+SVSNGC  + RKN
Sbjct:  325 PVAEPVDA----RDILRQTQSHLNRLGCDAGTPDGITGPRTREAFRRFLVATDVALEAGDLGTAQALEAIKVRSGTVCKQVVAAPAPEADTPREPGQSTPAAPVYSMVGTWNWSATCPLGVASGTTTYRSAGGNAFTGTITGTSGSGTTRGSLNGRSYSATETFGWVTNTASGTLSKDGRSLSISVSNGCRVTVRKN 517          
BLAST of mRNA_C-australica_Contig_10482.1.1 vs. uniprot
Match: UPI001C987BFB (trypsin-like peptidase domain-containing protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C987BFB)

HSP 1 Score: 208 bits (530), Expect = 1.340e-61
Identity = 110/185 (59.46%), Postives = 134/185 (72.43%), Query Frame = 1
Query:   46 RDILRQSQAQLNALGCDAGTPDGIMGPRTREAFRRFLAESDVALKVSDLGTAQALDAIRARSGTVCAPVVVAPKPVSRDAEPVAAPKPAAPTYSMAGSWRWTATCPLGQATGTTVYRSAGGNSFTGTISGSXXXXXXXXVLSGRNFSGTETFGWVTNSANGTLSADGRSLSLSVSNGCSDSARKN 600
            R+ILR+SQA LN LGCDAG  DG++GPRTREAFRRFLA + VAL V DLGT +AL AI A SG +C  V  AP P          P+ AAPTYSM G+W W+ATCPLG ATGT+ YRS GGN F+ TI+ +         L+GR ++ TET+GW+TNSA+G LSADGRSL+++VSNGC  +ARKN
Sbjct:  331 REILRKSQAHLNTLGCDAGAADGVLGPRTREAFRRFLAATGVALTVEDLGTVRALAAITATSGRICKTVAAAP-PAQET------PEAAAPTYSMVGTWSWSATCPLGIATGTSTYRSTGGNGFSATITSTAGPGTTQGTLNGRQYTATETYGWITNSASGRLSADGRSLTMTVSNGCRVTARKN 508          
BLAST of mRNA_C-australica_Contig_10482.1.1 vs. uniprot
Match: UPI000D557FCE (caspase family protein n=1 Tax=Tateyamaria sp. Alg231-49 TaxID=1922219 RepID=UPI000D557FCE)

HSP 1 Score: 201 bits (512), Expect = 1.060e-58
Identity = 112/195 (57.44%), Postives = 136/195 (69.74%), Query Frame = 1
Query:   22 PVDTGASRRDILRQSQAQLNALGCDAGTPDGIMGPRTREAFRRFLAESDVALKVSDLGTAQALDAIRARSGTVCAPVVVAPKP-VSRDAEPVAAPKPAAPTYSMAGSWRWTATCPLG-QATGTTVYRSAGGNSFTGTISGSXXXXXXXXVLSGRNFSGTETFGWVTNSANGTLSADGRSLSLSVSNGCSDSARKN 600
            P    +  R++LRQ+Q  LNALGCDAG PDGIMG RTR AFRRFL+ +D  L   DLGTA  L A++  SG VC       KP VS  A P A+ KPA P YS+AGSW W+A+CPLG +A+GTT YRS GGN+FTG+ISGS        VL+GR++S TE +GWV N++ GTLS DGR+LS  VSNGC  +ARKN
Sbjct:  341 PAGEASDSREVLRQTQESLNALGCDAGAPDGIMGSRTRAAFRRFLSATDTGLGADDLGTAHGLQALKQHSGRVCKAQPAPSKPAVSATATPDASAKPA-PQYSIAGSWSWSASCPLGLKASGTTRYRSGGGNAFTGSISGSAGPATVRGVLNGRSYSATEDYGWVRNTSTGTLSQDGRTLSTLVSNGCRVTARKN 534          
BLAST of mRNA_C-australica_Contig_10482.1.1 vs. uniprot
Match: UPI001C959812 (caspase family protein n=2 Tax=Leisingera TaxID=191028 RepID=UPI001C959812)

HSP 1 Score: 132 bits (332), Expect = 1.050e-32
Identity = 85/180 (47.22%), Postives = 110/180 (61.11%), Query Frame = 1
Query:   46 RDILRQSQAQLNALGCDAGTPDGIMGPRTREAFRRFLAESDVALKVSDLGTAQALDAIRARSGTVCAPVVVAPKPVSRDAEPVAAPKPAAPTYSMAGSWRWTATCPLG-QATGTTVYRSAGGNSFTGTISGSXXXXXXXXV-LSGRNFSGTETFGWVTNSANGTLSADGRSLSLSVSNGC 579
            R ++R++QA LN +GC AG PDGI GPRTR AF  +LA +D  L   DLGTA AL+ +R +SG VC     APKPVS  A   AA   AAP  S+AG+W++ ATC L  + TG   Y  AGGN + G ++ S        V L+G+  SGT+ F  +T +  G L+ADGRS + S S GC
Sbjct:  340 RQVMRETQAALNDIGCQAGRPDGIAGPRTRSAFAAYLAAADSTLGADDLGTAHALEELRQKSGKVCK---TAPKPVSAPAP--AASAEAAPV-SLAGAWKFKATCALVVKVTGNVHYTHAGGNKYHGRLNDSLGQNANTEVYLNGQQLSGTDYFPGITVTWRGRLAADGRSFTASGSTGC 513          
BLAST of mRNA_C-australica_Contig_10482.1.1 vs. uniprot
Match: A0A848VVX0_9RHOB (Caspase family protein n=1 Tax=Silicimonas sp. TaxID=2058390 RepID=A0A848VVX0_9RHOB)

HSP 1 Score: 119 bits (299), Expect = 4.510e-28
Identity = 83/199 (41.71%), Postives = 108/199 (54.27%), Query Frame = 1
Query:    7 EPVAEPVDTGASRRDILRQSQAQLNALGCDAGTPDGIMGPRTREAFRRFLAESDVALKVSDLGTAQALDAIRARSGTVCAPVVVAPKPVSRDAEPVAAPKPAAPTYSMAGSWRWTATCPLG-QATGTTVYRSAGGNSFTGTISGSXXXXXXXX-VLSGRNFSGTETFGWVTNSANGTLSADGRSLSLSVSNGCSDSARK 597
            EP   P   G  RR I+R +Q +LN LGCDAG  DGI G RTR AF  +L  S+  L  +DLGT QAL A+R  +GT+C        P+ +  +P   P    P  S+ G+WR+ A CPL    TGT+  RSAGG S TGT   S           +GRNF+        + + NGTLSADG+S +   S GC  +A++
Sbjct:  325 EPATVPAAPGTDRRAIMRATQVELNRLGCDAGGADGIAGRRTRAAFAAYLQGSNAGLTGNDLGTPQALAALRTETGTICK------LPMDQADDPSIPPSTKGP--SLVGTWRFVANCPLFITTTGTSRIRSAGGASVTGTAQDSLGQALRISGTTAGRNFTIFVRSDSASATENGTLSADGKSYTSQNSLGCRITAKR 515          
BLAST of mRNA_C-australica_Contig_10482.1.1 vs. uniprot
Match: A0A1I6YJI1_9RHOB (Uncharacterized protein, contains caspase domain n=2 Tax=Sedimentitalea nanhaiensis TaxID=999627 RepID=A0A1I6YJI1_9RHOB)

HSP 1 Score: 117 bits (292), Expect = 4.810e-27
Identity = 77/182 (42.31%), Postives = 103/182 (56.59%), Query Frame = 1
Query:   43 RRDILRQSQAQLNALGCDAGTPDGIMGPRTREAFRRFLAESDVALKVSDLGTAQALDAIRARSGTVCAPVVVAPKPVSRDAEPVAAPKPAAPTYSMAGSWRWTATCPLG-QATGTTVYRSAGGNSFTGTISGSXXXXXXXXV-LSGRNFSGTETFGWVTNSANGTLSADGRSLSLSVSNGCS 582
            RR I+R +Q  LNA GC AGT DGI+G RTR+AFR++L E+   L  +DLGT  A  A+  R G VC P V AP   S  A        +A    +AG+WR+TATC    +  G+  ++  G N+F G +S S        V L+GR+ +GT+ F  VT    G L+ADG S + + S GCS
Sbjct:  353 RRTIIRDTQLALNAAGCSAGTADGIIGARTRQAFRKWLDETAADLHEADLGTDTARRAVMVRKGRVCPPAVTAPVQPSASAA-----AGSATALGLAGNWRYTATCAFVIKVHGSVRFKRTGPNAFHGNLSDSLGQKANSDVYLNGRDITGTDYFPGVTVRWRGRLAADGNSYTATGSTGCS 529          
BLAST of mRNA_C-australica_Contig_10482.1.1 vs. uniprot
Match: A0A1B8S3M6_9RHOB (CASPASE_P20 domain-containing protein n=8 Tax=Rhodobacterales TaxID=204455 RepID=A0A1B8S3M6_9RHOB)

HSP 1 Score: 115 bits (289), Expect = 9.600e-27
Identity = 75/180 (41.67%), Postives = 100/180 (55.56%), Query Frame = 1
Query:   46 RDILRQSQAQLNALGCDAGTPDGIMGPRTREAFRRFLAESDVALKVSDLGTAQALDAIRARSGTVCAPVVVAPKPVSRDAEPVAAPKPAAPTYSMAGSWRWTATCPLG-QATGTTVYRSAGGNSFTGTISGSXXXXXXXXV-LSGRNFSGTETFGWVTNSANGTLSADGRSLSLSVSNGC 579
            + ++R +QA LN +GC AG  DGI GPRTR AF  +LA SD  L   DLGTA AL+ +R +SG +C P   AP+  S                 +AG+W++ ATC L  + TG   Y  AGGN + G +S S        V L+G+  SGT+ F  +T +  G L+ADGRS + S S GC
Sbjct:  319 KSVMRDTQAALNEIGCQAGRTDGIAGPRTRSAFAAYLAASDSNLGADDLGTAHALEELRQKSGEICKP---APRTASAXXXXXXXXX-----XPLAGAWKFKATCALVVKVTGNVHYTHAGGNKYHGRLSDSLGQNANTEVYLNGQQISGTDYFPGITVTWRGRLAADGRSFTSSGSTGC 490          
BLAST of mRNA_C-australica_Contig_10482.1.1 vs. uniprot
Match: A0A2E2PDN8_9RHOB (CASPASE_P20 domain-containing protein n=1 Tax=Pseudooceanicola sp. TaxID=1914328 RepID=A0A2E2PDN8_9RHOB)

HSP 1 Score: 113 bits (283), Expect = 8.530e-26
Identity = 84/199 (42.21%), Postives = 110/199 (55.28%), Query Frame = 1
Query:    7 EPVAEPVDTGASRRDILRQSQAQLNALGCDAGTPDGIMGPRTREAFRRFLAESDVALKVSDLGTAQALDAIRARSGTVCAPVVVAPKPVSRDAEPVAAPKPAAPTYSMAGSWRWTATCPLG-QATGTTVYRSAGGNSFTGTISGSXXXXXXXXV-LSGRNFSGTETFGWVTNSANGTLSADGRSLSLSVSNGCSDSARK 597
            EP A P     SRRDI+RQ+Q  L A GC+AG  DG++G RTR AF  FLA S   L    LG+  AL A+   +G+VC   V AP P ++  E  AA  P     ++AG+W +TATCPL    TGT   R AG   F GT+S S        + L+G  F+ TE +   T +  G LSADG+S + + + GC   AR+
Sbjct:  347 EPTA-PAQPDLSRRDIIRQTQQGLTARGCNAGMADGVIGARTRRAFADFLAHSGSTLSPETLGSQAALTAVIRATGSVCK-TVAAPAPGAQP-EQAAASGP-----TLAGTWGFTATCPLFITTTGTVRLRDAGQGRFIGTMSDSLGQTAQLNLQLNGLAFTATEIYPHTTIAGRGRLSADGQSYTSATAAGCKVQARR 537          
BLAST of mRNA_C-australica_Contig_10482.1.1 vs. uniprot
Match: A0A1H6VZ97_9RHOB (Uncharacterized protein, contains caspase domain n=1 Tax=Cribrihabitans marinus TaxID=1227549 RepID=A0A1H6VZ97_9RHOB)

HSP 1 Score: 107 bits (268), Expect = 9.910e-24
Identity = 71/178 (39.89%), Postives = 100/178 (56.18%), Query Frame = 1
Query:   55 LRQSQAQLNALGCDAGTPDGIMGPRTREAFRRFLAESDVALKVSDLGTAQALDAIRARSGTVCAPVVVAPKPVSRDAEPVAAPKPAAPTYSMAGSWRWTATCPLG-QATGTTVYRSAGGNSFTGTISGSXXXXXXXXV-LSGRNFSGTETFGWVTNSANGTLSADGRSLSLSVSNGCS 582
            +R +QA LNA GC AG  DG++GPRTR AF RF+  S  +L    LG+  AL AI A    VC P   AP+   + A   A   PAA   +++GSW++ A C L  + TGT  +R +G N++ G ++ S        V L+ R  +GT+ F  VT    G ++ADG+S + + S GCS
Sbjct:  363 IRATQAALNAAGCSAGGADGVIGPRTRSAFARFIDASGASLNPDGLGSVDALRAIEAAGRNVCKP---APRQAPQSASATA---PAAGGLTLSGSWKYRANCVLVVKVTGTVTFRKSGANAYHGRLADSLGQRANSDVYLNSREITGTDYFPGVTVKWRGRMAADGQSYTATGSTGCS 534          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10482.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A222E515_9RHOB2.280e-11096.89Trypsin-like peptidase domain protein n=2 Tax=Rose... [more]
A0A0B3S0U3_9RHOB4.290e-7665.99PKD repeat protein n=7 Tax=Mameliella TaxID=143401... [more]
UPI001C987BFB1.340e-6159.46trypsin-like peptidase domain-containing protein n... [more]
UPI000D557FCE1.060e-5857.44caspase family protein n=1 Tax=Tateyamaria sp. Alg... [more]
UPI001C9598121.050e-3247.22caspase family protein n=2 Tax=Leisingera TaxID=19... [more]
A0A848VVX0_9RHOB4.510e-2841.71Caspase family protein n=1 Tax=Silicimonas sp. Tax... [more]
A0A1I6YJI1_9RHOB4.810e-2742.31Uncharacterized protein, contains caspase domain n... [more]
A0A1B8S3M6_9RHOB9.600e-2741.67CASPASE_P20 domain-containing protein n=8 Tax=Rhod... [more]
A0A2E2PDN8_9RHOB8.530e-2642.21CASPASE_P20 domain-containing protein n=1 Tax=Pseu... [more]
A0A1H6VZ97_9RHOB9.910e-2439.89Uncharacterized protein, contains caspase domain n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10482contigC-australica_Contig_10482:179..781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1002340.AFCF01000032_gene3771
Preferred nameMA20_30665
PFAMsPeptidase_C14
Model size603
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.28e-30
EggNOG OGsCOG4249@1|root,COG4249@2|Bacteria,1MX7B@1224|Proteobacteria,2TUDI@28211|Alphaproteobacteria
DescriptionPeptidase C14 caspase catalytic subunit p20
Cds size603
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586784.542799-CDS-C-australica_Contig_10482:178..7811682586784.542799-CDS-C-australica_Contig_10482:178..781Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10482 179..781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10482.1.1prot_C-australica_Contig_10482.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10482 179..781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10482.1.1

>prot_C-australica_Contig_10482.1.1 ID=prot_C-australica_Contig_10482.1.1|Name=mRNA_C-australica_Contig_10482.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=201bp
AAEPVAEPVDTGASRRDILRQSQAQLNALGCDAGTPDGIMGPRTREAFRR
FLAESDVALKVSDLGTAQALDAIRARSGTVCAPVVVAPKPVSRDAEPVAA
PKPAAPTYSMAGSWRWTATCPLGQATGTTVYRSAGGNSFTGTISGSSGAG
TTRGVLSGRNFSGTETFGWVTNSANGTLSADGRSLSLSVSNGCSDSARKN
*
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mRNA from alignment at C-australica_Contig_10482:179..781-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10482.1.1 ID=mRNA_C-australica_Contig_10482.1.1|Name=mRNA_C-australica_Contig_10482.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=603bp|location=Sequence derived from alignment at C-australica_Contig_10482:179..781- (Chrysoparadoxa australica CS_1217)
GCTGCGGAACCCGTTGCGGAACCTGTTGATACCGGGGCGAGCCGTCGTGA CATCCTGCGTCAGTCGCAAGCACAACTGAACGCGCTGGGCTGTGACGCGG GCACACCGGACGGGATCATGGGCCCGCGCACGCGCGAGGCGTTTCGCCGC TTTCTGGCGGAGAGCGATGTGGCGCTGAAGGTCAGCGATCTGGGCACGGC GCAGGCGCTGGATGCGATCCGGGCGCGGTCCGGGACGGTCTGCGCCCCGG TCGTGGTGGCCCCCAAGCCGGTATCTAGGGACGCGGAGCCGGTCGCGGCG CCCAAGCCCGCCGCGCCAACCTATTCAATGGCCGGATCATGGCGCTGGAC GGCAACCTGTCCGTTGGGGCAGGCAACCGGAACCACCGTTTATCGGTCGG CGGGCGGCAATTCCTTTACCGGTACGATCAGCGGCTCATCCGGCGCAGGC ACCACGCGGGGCGTATTGAGCGGCCGCAATTTCTCGGGGACGGAGACATT TGGTTGGGTGACAAACTCTGCCAACGGCACCTTGTCGGCGGATGGCCGGT CGCTGAGTCTGAGCGTCTCGAATGGGTGCAGCGATTCGGCGCGCAAGAAC TAG
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Coding sequence (CDS) from alignment at C-australica_Contig_10482:179..781-

>mRNA_C-australica_Contig_10482.1.1 ID=mRNA_C-australica_Contig_10482.1.1|Name=mRNA_C-australica_Contig_10482.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=603bp|location=Sequence derived from alignment at C-australica_Contig_10482:179..781- (Chrysoparadoxa australica CS_1217)
GCTGCGGAACCCGTTGCGGAACCTGTTGATACCGGGGCGAGCCGTCGTGA
CATCCTGCGTCAGTCGCAAGCACAACTGAACGCGCTGGGCTGTGACGCGG
GCACACCGGACGGGATCATGGGCCCGCGCACGCGCGAGGCGTTTCGCCGC
TTTCTGGCGGAGAGCGATGTGGCGCTGAAGGTCAGCGATCTGGGCACGGC
GCAGGCGCTGGATGCGATCCGGGCGCGGTCCGGGACGGTCTGCGCCCCGG
TCGTGGTGGCCCCCAAGCCGGTATCTAGGGACGCGGAGCCGGTCGCGGCG
CCCAAGCCCGCCGCGCCAACCTATTCAATGGCCGGATCATGGCGCTGGAC
GGCAACCTGTCCGTTGGGGCAGGCAACCGGAACCACCGTTTATCGGTCGG
CGGGCGGCAATTCCTTTACCGGTACGATCAGCGGCTCATCCGGCGCAGGC
ACCACGCGGGGCGTATTGAGCGGCCGCAATTTCTCGGGGACGGAGACATT
TGGTTGGGTGACAAACTCTGCCAACGGCACCTTGTCGGCGGATGGCCGGT
CGCTGAGTCTGAGCGTCTCGAATGGGTGCAGCGATTCGGCGCGCAAGAAC
TAG
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