mRNA_C-australica_Contig_10471.1.1 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_10471.1.1 vs. uniprot
Match: A0A2D4SCF1_9GAMM (Uncharacterized protein n=1 Tax=Salinisphaeraceae bacterium TaxID=2026789 RepID=A0A2D4SCF1_9GAMM) HSP 1 Score: 211 bits (538), Expect = 2.270e-63 Identity = 121/255 (47.45%), Postives = 155/255 (60.78%), Query Frame = 1
Query: 1 LRDWIGRWLVRRSATSAPRQAPLPPPARILVCRVNKRLGNTVLLTPLLQSLAATFPQARIDVLVQGRFNGVLLANLPGINRVHEVPVEPWPLLRRILPLIHHLRRQRYDLAVDPNNHSTSNRVAMACSGARHRLGFAGPDQWLNLTHAAAFPERETHTGLQPLHLL-SALAGTPIRRVSHTRIRLTDDQRTRAGNRLETALDGLPDGPLIGFFADATGGKQLPRDWWQAWCAALCKQAPGVTLVQMVRPGDPALT 762
LR + R R T R APLP P RILVCR+NKR+GN + LTPLLQSLAA+FP+A IDVLV+ + VLL+ LP I++V+ +P +P +L+ I L RR R+DLA+DP HS S+R A+ SGARHRLGFA QWL L+HAA H GL+PL LL + G V +R + R RA N L A P + FF +ATG K+LP WWQAW A+ + P + LVQ++ PG+ A T
Sbjct: 37 LRTHLSRRAARWLGTRTSRSAPLPAPQRILVCRLNKRIGNVLFLTPLLQSLAASFPRAHIDVLVRDPAHAVLLSGLPNIDQVYTLPRKPLAILKFIFAL----RRVRHDLAIDPMVHSESDRSAVLLSGARHRLGFAAEHQWLKLSHAALPDATVRHEGLKPLALLHETIEGHSCELVRTLSVRPSGAARDRAANILARADIDASRSPTLAFFTEATGKKRLPAAWWQAWVGAVREARPDIQLVQVIAPGNRAST 287
BLAST of mRNA_C-australica_Contig_10471.1.1 vs. uniprot
Match: A0A423PJZ9_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A423PJZ9_9GAMM) HSP 1 Score: 196 bits (497), Expect = 2.440e-57 Identity = 119/254 (46.85%), Postives = 155/254 (61.02%), Query Frame = 1
Query: 4 RDWIGRWLVRRSATSAPRQAPLPPPAR-ILVCRVNKRLGNTVLLTPLLQSLAATFPQARIDVLVQGRFNGVLLANLPGINRVHEVPVEPWPLLRRILPLIHHLRRQRYDLAVDPNNHSTSNRVAMACSGARHRLGFAGPDQWLNLTHAAAFPERETHTGLQPLHLLSALAGTPIRRVSHTRIRLTDDQRTRAGNRL-ETALDGLPD-GPLIGFFADATGGKQLPRDWWQAWCAALCKQAPGVTLVQMVRPGDPA 756
R R L R TS ++ PL P R ILV R+NKRLGN + LTP+L+SL+A+ P+ARID+++Q LL +LPG+ +V+ L +L L+ +RRQRYDLA+DP +S SNR++MA SGAR RLGFA DQWL LTHAA + H LQ + LL+ P T D+Q +A +R+ +T L G D P+IGFFA ATG KQLPR WWQAW A+ AP LV+++ PGD A
Sbjct: 33 RQRFNRTLARLFGTSRAKRMPLAPDTRRILVVRLNKRLGNILFLTPMLRSLSASLPEARIDLVIQSPAQVALLQSLPGVGQVYIQRNS----LFGLLGLLRTIRRQRYDLAIDPTGNSASNRMSMALSGARQRLGFANKDQWLPLTHAAGRTQSR-HQALQAVELLNDAIAEPEIECFDTLAVFPDNQARQAADRIWQTTLAGQADEAPVIGFFARATGRKQLPRHWWQAWIIAMRAAAPSAVLVEIL-PGDDA 280
BLAST of mRNA_C-australica_Contig_10471.1.1 vs. uniprot
Match: A0A423PSG6_9GAMM (Uncharacterized protein n=3 Tax=Salinisphaera TaxID=180541 RepID=A0A423PSG6_9GAMM) HSP 1 Score: 176 bits (447), Expect = 6.970e-50 Identity = 109/252 (43.25%), Postives = 144/252 (57.14%), Query Frame = 1
Query: 4 RDWIGRWLVRRSATSAPRQAPLPPPAR-ILVCRVNKRLGNTVLLTPLLQSLAATFPQARIDVLVQGRFNGVLLANLPGINRVHEVPVEPWPLLRRILPLIHHLRRQRYDLAVDPNNHSTSNRVAMACSGARHRLGFAGPDQWLNLTHAAAFPERETHTGLQPLHLLSALAGTPIRRVSHTRIRLTDDQRTRAGNR---LETALDGLPDGPLIGFFADATGGKQLPRDWWQAWCAALCKQAPGVTLVQMVRPG 747
R+ + RWL R T+ P +APL R +LV R+NKRLGN + LTP+L++LAA+ P A IDVL++ LL +LPGI RV P L ++ LI LRR+RYDLA+DP +S+SNR A+A SGAR R+GFA QWL LTHAA H Q + LL+ + T + + D R + R +E G GP+IGFF ATG K LP WW+ WC + AP TL+++ PG
Sbjct: 26 RERLNRWLTRFMGTARPVRAPLAADTRRVLVVRLNKRLGNILFLTPMLRTLAASLPTASIDVLIRDPRQKPLLESLPGIGRVWVQPRG----LGALIGLIRRLRRERYDLAIDPTGNSSSNRTAVALSGARQRMGFASNSQWLRLTHAAG-RANSRHQAEQAVALLTDSVDELDFKTFDT-LAVFPDNRAQTAARAHWVEALGPGPTRGPVIGFFTRATGRKALPAAWWRDWCEQMHHLAPAATLLEIRPPG 271
BLAST of mRNA_C-australica_Contig_10471.1.1 vs. uniprot
Match: A0A2Z3J6V7_9GAMM (Lipopolysaccharide heptosyltransferase III n=1 Tax=Salinisphaera sp. LB1 TaxID=2183911 RepID=A0A2Z3J6V7_9GAMM) HSP 1 Score: 176 bits (446), Expect = 1.080e-49 Identity = 109/248 (43.95%), Postives = 142/248 (57.26%), Query Frame = 1
Query: 25 LVRRSATSAPRQAPLPPPAR-ILVCRVNKRLGNTVLLTPLLQSLAATFPQARIDVLVQGRFNGVLLANLPGINRVHEVPVEPWPLLRRILPLIHHLRR---QRYDLAVDPNNHSTSNRVAMACSGARHRLGFAGPDQWLNLTHAAAFPERETHTGLQPLHLLS-ALAGTPIRRVSHTRIRLTDDQRTRAGNRLETALDGLPDG-PLIGFFADATGGKQLPRDWWQAWCAALCKQAPGVTLVQMVRPGD 750
L R T R+ PL P R ILV R+NKRLGN + LTP+L+SLAAT P+ARIDVL+Q LL +LPGI R+ W R+LP++ LR QRYDL +DP +S SNR M AR R+GFA DQWL LTHAA+ E H LQ + LL+ A++ P+ + + A +R + AL P G P+IGFF+ ATG K LPR WWQAW + + P L++++ D
Sbjct: 31 LARLLGTPEARRRPLAPDTRRILVVRLNKRLGNILFLTPMLRSLAATLPEARIDVLIQTPAQAKLLQSLPGIGRI-------WIQENRLLPMVRTLRAIRAQRYDLTIDPTGNSASNRFGMVLIPARQRMGFARSDQWLPLTHAASKSESR-HQALQAVELLTNAISQPPVTTFDTLAVFPDAADQKAADDRWQAALGERPPGAPVIGFFSRATGRKMLPRHWWQAWILEVRRAVPEAILLEILPGAD 270
BLAST of mRNA_C-australica_Contig_10471.1.1 vs. uniprot
Match: A0A3A5J1T6_9GAMM (Lipopolysaccharide heptosyltransferase family protein n=1 Tax=Salinisphaera sp. Q1T1-3 TaxID=2321229 RepID=A0A3A5J1T6_9GAMM) HSP 1 Score: 171 bits (434), Expect = 2.850e-48 Identity = 109/254 (42.91%), Postives = 145/254 (57.09%), Query Frame = 1
Query: 13 IGRWLVRRSATSAPRQAPLPPPAR-ILVCRVNKRLGNTVLLTPLLQSLAATFPQARIDVLVQGRFNGVLLANLPGINRVHEVPVEPWPLLRRILPL---IHHLRRQRYDLAVDPNNHSTSNRVAMACSGARHRLGFAGPDQWLNLTHAAAFPERETHTGLQPLHLLSA-LAGTPIRRVSHTRIRLTDDQRTRAGNRLETALDGL-PDGPLIGFFADATGGKQLPRDWWQAWCAALCKQAPGVTLVQMVRPGDPA 756
+ + L R T R+ PL R ILV R+NKRLGN + LTP+L+SLAA+ P+ARID+++Q LL +LPG+ RV W R+ L + +RR+RYDLA+DP +S SNR+ MA SGAR RLGFA DQWL LTHAA H LQ + LL+ ++ PI R + R A L + P P+IGFF+ ATG KQL R WW+A+ AA+ + P LV+++ PG A
Sbjct: 1 MNQLLARLLGTPGARRRPLAADTRRILVVRLNKRLGNVLFLTPMLRSLAASLPEARIDIVIQSPAQVDLLQSLPGVGRV-------WVQKNRVFGLFGLLRAIRRERYDLAIDPTGNSASNRIGMALSGARQRLGFANADQWLPLTHAAG-RSISRHQALQAVELLTGGISDPPIERFDTLAVFPEACDRQAAETLWHDTLGVMAPRTPVIGFFSRATGDKQLARPWWEAFLAAVSQAGPNAVLVEIL-PGPDA 245
BLAST of mRNA_C-australica_Contig_10471.1.1 vs. uniprot
Match: A0A084II79_SALHC (Glycosyl transferase family protein n=1 Tax=Salinisphaera hydrothermalis (strain C41B8) TaxID=1304275 RepID=A0A084II79_SALHC) HSP 1 Score: 172 bits (436), Expect = 3.470e-48 Identity = 105/254 (41.34%), Postives = 143/254 (56.30%), Query Frame = 1
Query: 13 IGRWLVRRSATSAPRQAPLPPPAR-ILVCRVNKRLGNTVLLTPLLQSLAATFPQARIDVLVQGRFNGVLLANLPGINRVHEVPVEPWPLLRRILP---LIHHLRRQRYDLAVDPNNHSTSNRVAMACSGARHRLGFAGPDQWLNLTHAAAFPERETHTGLQPLHLLS-ALAGTPIRRVSHTRIRLTDDQRTRAGNRLETALDGLPDG-PLIGFFADATGGKQLPRDWWQAWCAALCKQAPGVTLVQMVRPGDPA 756
R+L R T R+ PL P R ILV R+NKRLGN + LTP+L+SLAAT P+ARIDV++Q LL +LPGI R+ W R+L L+ +LR QRYDL +DP +S SNR+ +A R R+GFA DQWL LTHA+ + H LQ + LL+ +++ P+ + D + A R + L G P+IGFF+ ATG K LPR WWQAW + + P L++++ D A
Sbjct: 27 FNRFLARLLGTPEARRRPLAPDTRRILVVRLNKRLGNILFLTPMLRSLAATLPEARIDVVIQSPAQARLLQSLPGIGRI-------WIQENRVLAVLRLLRNLRAQRYDLVIDPTGNSASNRIGVALVRTRQRMGFAKTDQWLPLTHASG-KTKSRHQALQAVELLTGSISEPPVTTFDTLAVFPDADDQRAADARWQAVLGARAHGAPVIGFFSRATGRKALPRHWWQAWILEVRRTVPQAVLLEILPSEDAA 272
BLAST of mRNA_C-australica_Contig_10471.1.1 vs. uniprot
Match: A0A2E0IXY5_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E0IXY5_9GAMM) HSP 1 Score: 163 bits (412), Expect = 1.060e-44 Identity = 107/256 (41.80%), Postives = 141/256 (55.08%), Query Frame = 1
Query: 4 RDWIGRWLVRRSATSAPRQAPLPPPAR-ILVCRVNKRLGNTVLLTPLLQSLAATFPQARIDVLVQGRFNGVLLANLPGINRVHEVPVEPWPLLRRILPLIHHLRRQRYDLAVDPNNHSTSNRVAMACSGARHRLGFAGPDQWLNLTHAAAFPERETHTGLQPLHLL-SALAGTPIRRVSHTRIRLTDDQRTRAGNRLETALDGLP-DGPLIGFFADATGGKQLPRDWWQAWCAALCKQAPGVTLVQMVRPGDPALT 762
R+ + R L R T+ PR+APL R +LV R+NKRLGN + LTP+L++LAA+ P ARIDV++Q LL LPGI RV LR L+ LR +RYDLA+DP+ +S SNR+A+A S AR R+GFA DQW+ LTHAA P R H Q + LL S++ G + +D A A P D P++ FF ATG KQL WW A+ + + P L+Q+ PG A T
Sbjct: 25 RERLNRVLARLLGTAEPRRAPLADDTRRVLVVRLNKRLGNILFLTPMLRTLAASLPAARIDVVIQDARQKALLETLPGIGRVWIQDKSLGASLR----LLRTLRARRYDLAIDPSGNSASNRLAIALSRARQRMGFARSDQWVPLTHAAPRP-RSRHQAQQAVELLASSVTGKCWDTFDSLAVFPSDAADRAAQAHWVEAFGATPVDAPVVAFFTQATGNKQLDDAWWSAFREQITARLPNARLLQICPPGMAAPT 275
BLAST of mRNA_C-australica_Contig_10471.1.1 vs. uniprot
Match: A0A2E9AJS4_9GAMM (Uncharacterized protein n=1 Tax=Salinisphaera sp. TaxID=1914330 RepID=A0A2E9AJS4_9GAMM) HSP 1 Score: 152 bits (385), Expect = 1.340e-40 Identity = 104/258 (40.31%), Postives = 136/258 (52.71%), Query Frame = 1
Query: 4 RDWIGRWLVRRSATSAPRQAPLPPPAR-ILVCRVNKRLGNTVLLTPLLQSLAATFPQARIDVLVQGRFNGVLLANLPGINRVHEVPVEPW---PLLRRILPLIHHLRRQRYDLAVDPNNHSTSNRVAMACSGARHRLGFAGPDQWLNLTHAAAFPERETHTGLQPLHLL-SALAGTPIRRVSHTRIRLTDDQRTRAGNRLETALDGLP---DGPLIGFFADATGGKQLPRDWWQAWCAALCKQAPGVTLVQMVRPGDP 753
R + R + R T P +PL R ILV R+NKRLGN + LTP+L+SLAA+ P A IDVL++ LL +LP I +V W L L L+ LR YDLA+DP+ +S SNR+A+A SG+R RLGFA DQW+ LTHAA + H LQ + LL S++ G P + + A R A P P +GFF ATG KQL DWWQ + A ++ P L+Q+ P P
Sbjct: 35 RQRLNRLMTRLFGTVEPLASPLTGDTRRILVVRLNKRLGNILFLTPMLRSLAASLPAATIDVLIEDPRQKPLLESLPAIGQV-------WVRNKSLPATLRLLRRLRSIGYDLAIDPSGNSASNRLALALSGSRQRLGFAANDQWVRLTHAAP-RTKSRHQALQSVELLTSSITGVPWKTFETLAV-FPHGPSNAAAQRYWQAAFTPPIRSTTPTVGFFTPATGAKQLDADWWQEFVALFKQRLPTARLLQIRAPDQP 283
BLAST of mRNA_C-australica_Contig_10471.1.1 vs. uniprot
Match: U2E9Y4_9GAMM (Heptosyltransferase III protein n=1 Tax=Salinisphaera shabanensis E1L3A TaxID=1033802 RepID=U2E9Y4_9GAMM) HSP 1 Score: 150 bits (378), Expect = 1.130e-39 Identity = 100/254 (39.37%), Postives = 131/254 (51.57%), Query Frame = 1
Query: 4 RDWIGRWLVRRSATSAPRQAPLPPPAR-ILVCRVNKRLGNTVLLTPLLQSLAATFPQARIDVLVQGRFNGVLLANLPGINRVHEVPVEPWPLLRRILPLIHHLRRQRYDLAVDPNNHSTSNRVAMACSGARHRLGFAGPDQWLNLTHAAAFPERETHTGLQPLHLL-SALAGTPIRRVSHTRIRLTDDQRTRAGNRLETALDGLPDGPL--IGFFADATGGKQLPRDWWQAWCAALCKQAPGVTLVQMVRPGDP 753
R R L R T PR+ P R ILV R+NKRLGN + LTP+L+SLAA+ P A IDVL+Q LL LPGI +V LR L+ LR RYDLA+DP+ +STSNR+A+A + + R+GFA DQWL LTHAA P+ H LQ + LL S++ + + + A +TA G +GFF ATG KQ WW+ + K+ P L+Q+ P P
Sbjct: 24 RQRFNRLLTRVFGTVEPRRRPFASDTRRILVVRLNKRLGNILFLTPMLRSLAASLPAATIDVLIQDARQKPLLEGLPGIGQVWVQEKS----LRATFGLLRRLRSIRYDLAIDPSGNSTSNRLALALARTQQRMGFAARDQWLPLTHAAPRPDSR-HQALQSVELLQSSVTDFDWKTFNTLAVFPCAPSHKLAQRHWQTAFAGQARATTTTVGFFTRATGRKQFDESWWREFVTRFRKRLPAARLIQIRAPDQP 272
BLAST of mRNA_C-australica_Contig_10471.1.1 vs. uniprot
Match: A0A1T4PJW8_9GAMM (ADP-heptose:LPS heptosyltransferase n=1 Tax=Lysobacter spongiicola DSM 21749 TaxID=1122188 RepID=A0A1T4PJW8_9GAMM) HSP 1 Score: 135 bits (339), Expect = 7.070e-34 Identity = 89/248 (35.89%), Postives = 127/248 (51.21%), Query Frame = 1
Query: 13 IGRWLVRR--SATSAPRQAPLPPPA--RILVCRVNKRLGNTVLLTPLLQSLAATFPQARIDVLVQGRFNGVLLANLPGINRVHEVPVEPWPLLRRILPLIHHLRRQRYDLAVDPNNHSTSNRVAMACSGARHRLGFAGPDQWLNLTHAAAFPERETHTGLQPLHLLSALAGTPIRRVSHT-RIRLTDDQRTRAGNRLETALDG--LPDGPLIGFFADATGGKQLPRDWWQAWCAALCKQAPGVTLVQM 735
I RWLV R + S Q PLPP R+LVC+V+ LGNT+LLTPL+Q L +P A +DV+ + LL P + RV ++P + + L ++ LRR YDLA+D + S + R+ + + AR+R+GF GP Q + P L P++LL G T +RL+D +R + L L P P+IG FA+ATG K LPR+WW + L PG V++
Sbjct: 20 ISRWLVGRLFRSPSGGGQGPLPPTGILRVLVCKVSHTLGNTLLLTPLMQELERRYPGAEVDVVTRSPVAAALLEGYPRLGRVMQLPAHGFRHPLQWLGVLRQLRRGGYDLAIDADPRSQTGRLLVNLTHARYRIGFVGPGQHGGIGVPVPVPADLRRQSLLPVYLLRHALGAAATGPWPTPALRLSDSERAQGRMLLAGLLPDPHAPRQPVIGIFANATGHKLLPREWWMGFLDELEALCPGHDFVEI 267 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10471.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10471.1.1 >prot_C-australica_Contig_10471.1.1 ID=prot_C-australica_Contig_10471.1.1|Name=mRNA_C-australica_Contig_10471.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=254bp LRDWIGRWLVRRSATSAPRQAPLPPPARILVCRVNKRLGNTVLLTPLLQSback to top mRNA from alignment at C-australica_Contig_10471:52..813+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10471.1.1 ID=mRNA_C-australica_Contig_10471.1.1|Name=mRNA_C-australica_Contig_10471.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=762bp|location=Sequence derived from alignment at C-australica_Contig_10471:52..813+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10471:52..813+ >mRNA_C-australica_Contig_10471.1.1 ID=mRNA_C-australica_Contig_10471.1.1|Name=mRNA_C-australica_Contig_10471.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=762bp|location=Sequence derived from alignment at C-australica_Contig_10471:52..813+ (Chrysoparadoxa australica CS_1217)back to top |