mRNA_C-australica_Contig_10469.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10469.1.1
Unique NamemRNA_C-australica_Contig_10469.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_10469.1.1 vs. uniprot
Match: U2EBB4_9GAMM (Cell division protein ZapD n=2 Tax=Salinisphaera TaxID=180541 RepID=U2EBB4_9GAMM)

HSP 1 Score: 112 bits (280), Expect = 1.680e-28
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    7 LTDNGLTCFEQPLNERVRTFLRLEHLFEQTRHYWQDPCPWGRRATLSTLLDILAILSRHDLRTEVGKELADQYTKLNRLRNHSGIDHARLDDILRDID 300
            + DNG  C+EQPLNER+RTFLRLEHL  + RH+  D  PWGRRATL  L+DIL ++SR+D R EV KEL  +Y    +L +   +D   L  +L ++D
Sbjct:    1 MADNGAFCYEQPLNERIRTFLRLEHLIARLRHHEADESPWGRRATLGALIDILNVMSRYDTRAEVSKELGSRYAAFEKLADRDDVDDRALKQVLDELD 98
[Close]
BLAST of mRNA_C-australica_Contig_10469.1.1 vs. uniprot
Match: A0A423PNQ7_9GAMM (Cell division protein ZapD n=2 Tax=Salinisphaera TaxID=180541 RepID=A0A423PNQ7_9GAMM)

HSP 1 Score: 112 bits (280), Expect = 1.680e-28
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:    7 LTDNGLTCFEQPLNERVRTFLRLEHLFEQTRHYWQDPCPWGRRATLSTLLDILAILSRHDLRTEVGKELADQYTKLNRLRNHSGIDHARLDDILRDID 300
            + D+G  CFEQPLNER+RTFLRLEHL  + R++  D   WGRRA +  LLDIL ++SRHD+RTEV KEL  +Y  L RL     +D A L  +L ++D
Sbjct:    1 MADDGAFCFEQPLNERIRTFLRLEHLLARLRYHEADESVWGRRAAMGALLDILNVMSRHDIRTEVSKELGQRYAGLERLAERDDVDDAALRHVLDELD 98
[Close]
BLAST of mRNA_C-australica_Contig_10469.1.1 vs. uniprot
Match: A0A2Z3JAH4_9GAMM (Cell division protein ZapD n=1 Tax=Salinisphaera sp. LB1 TaxID=2183911 RepID=A0A2Z3JAH4_9GAMM)

HSP 1 Score: 110 bits (274), Expect = 1.320e-27
Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:    7 LTDNGLTCFEQPLNERVRTFLRLEHLFEQTRHYWQDPCPWGRRATLSTLLDILAILSRHDLRTEVGKELADQYTKLNRLRNHSGIDHARLDDILRDID 300
            +TD+G+ C+EQPLNER+RTFLR+EHL  + RH+  D   WGRRATL  LLDIL ++SRHD+R +V KEL  + T L++L     ID + L  IL  +D
Sbjct:    1 MTDDGVLCYEQPLNERIRTFLRVEHLTARLRHHCADTSAWGRRATLDALLDILNVMSRHDIRGQVSKELELRRTNLSQLSEREDIDQSALTGILTKLD 98
[Close]
BLAST of mRNA_C-australica_Contig_10469.1.1 vs. uniprot
Match: A0A2E0J236_9GAMM (Cell division protein ZapD n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E0J236_9GAMM)

HSP 1 Score: 108 bits (271), Expect = 3.700e-27
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    7 LTDNGLTCFEQPLNERVRTFLRLEHLFEQTRHYWQDPCPWGRRATLSTLLDILAILSRHDLRTEVGKELADQYTKLNRLRNHSGIDHARLDDILRDID 300
            + DNG+ C+EQPLNER+RTFLRLEHL  + R++  D   WGRRA L  LLDIL ++SR+D R EV KEL  +Y  L +L +   +D   L  +L ++D
Sbjct:    1 MADNGMFCYEQPLNERIRTFLRLEHLIARLRYHQADESVWGRRAALDALLDILNVMSRYDTRAEVSKELGGRYASLEKLADREDVDDKALRQVLEELD 98
[Close]
BLAST of mRNA_C-australica_Contig_10469.1.1 vs. uniprot
Match: A0A4U0H265_9GAMM (Cell division protein ZapD n=2 Tax=Sinimarinibacterium sp. CAU 1509 TaxID=2562283 RepID=A0A4U0H265_9GAMM)

HSP 1 Score: 103 bits (258), Expect = 3.320e-25
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:   31 FEQPLNERVRTFLRLEHLFEQTRHYWQDPCPWGRRATLSTLLDILAILSRHDLRTEVGKELADQYTKLNRLRNHSGIDHARLDDILRDI 297
            FEQPL ERVRTFLRLE LF Q RH+ QD   +G RATL+TLLD L +LSR DL+ ++ KEL+DQ+  L RL    GID  RLD IL +I
Sbjct:   10 FEQPLTERVRTFLRLEFLFAQHRHHRQDASEFGIRATLNTLLDTLVVLSRSDLKNDILKELSDQHAHLTRLAARPGIDQQRLDSILSEI 98
[Close]
BLAST of mRNA_C-australica_Contig_10469.1.1 vs. uniprot
Match: UPI0005C1638F (cell division protein ZapD n=1 Tax=Algiphilus aromaticivorans TaxID=382454 RepID=UPI0005C1638F)

HSP 1 Score: 103 bits (257), Expect = 4.580e-25
Identity = 51/98 (52.04%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:    7 LTDNGLTCFEQPLNERVRTFLRLEHLFEQTRHYWQDPCPWGRRATLSTLLDILAILSRHDLRTEVGKELADQYTKLNRLRNHSGIDHARLDDILRDID 300
            ++ NG   FEQPLNERVRTFLRLE LF Q  H+  D   WG RATL +LLDI++++SR DL+ E+ KEL++Q+  L +L    G+D  RL   L +ID
Sbjct:    1 MSQNGWVAFEQPLNERVRTFLRLETLFAQHAHHAADDSEWGLRATLHSLLDIMSVVSRSDLKVEIVKELSEQHDNLAQLAEKPGVDPQRLQSTLDEID 98
[Close]
BLAST of mRNA_C-australica_Contig_10469.1.1 vs. uniprot
Match: UPI001CA75744 (cell division protein ZapD n=1 Tax=Algiphilus sp. NNCM1 TaxID=2834409 RepID=UPI001CA75744)

HSP 1 Score: 103 bits (256), Expect = 6.450e-25
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    7 LTDNGLTCFEQPLNERVRTFLRLEHLFEQTRHYWQDPCPWGRRATLSTLLDILAILSRHDLRTEVGKELADQYTKLNRLRNHSGIDHARLDDILRDID 300
            +T      FEQPLNER+RTFLRLE LF Q  H+ +D   WG RA+L  LLDI +++SR D + EV KEL+DQY +L +L + +G+D +RL   L++ID
Sbjct:    1 MTQTAWLAFEQPLNERIRTFLRLETLFAQHAHHAEDDSEWGLRASLHRLLDIYSLVSRSDFKGEVVKELSDQYKQLKQLSDAAGVDQSRLQQTLQEID 98
[Close]
BLAST of mRNA_C-australica_Contig_10469.1.1 vs. uniprot
Match: A0A084IP39_SALHC (Cell division protein ZapD n=1 Tax=Salinisphaera hydrothermalis (strain C41B8) TaxID=1304275 RepID=A0A084IP39_SALHC)

HSP 1 Score: 101 bits (252), Expect = 2.480e-24
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:    7 LTDNGLTCFEQPLNERVRTFLRLEHLFEQTRHYWQDPCPWGRRATLSTLLDILAILSRHDLRTEVGKELADQYTKLNRLRNHSGIDHARLDDILRDID 300
            + D+G+ C+EQPLNER+RTFLR+EHL  +  H+ +D   WGRRA +  LLDIL ++SRHD+R +V KEL  +   L+ L     +D   L  IL ++D
Sbjct:    1 MADDGVLCYEQPLNERIRTFLRVEHLTARLHHHRRDTALWGRRAAMDALLDILNVMSRHDIRGQVSKELELRRASLHHLNERDDVDQEALTGILSELD 98
[Close]
BLAST of mRNA_C-australica_Contig_10469.1.1 vs. uniprot
Match: UPI001907139F (cell division protein ZapD n=1 Tax=Rhabdochromatium marinum TaxID=48729 RepID=UPI001907139F)

HSP 1 Score: 100 bits (250), Expect = 4.540e-24
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:   22 LTCFEQPLNERVRTFLRLEHLFEQTRHYWQDPCPWGRRATLSTLLDILAILSRHDLRTEVGKELADQYTKLNRLRNHSGIDHARLDDILRDI 297
            +T FE PLNER+RTFLRLEHLFE+  H+  D   W  RA L +LLDILAI SR D++ E+ KEL    T L R+R+  G+D A LDD+L  I
Sbjct:    1 MTLFEHPLNERIRTFLRLEHLFEKFDHFRADESVWSTRAALESLLDILAITSRSDIKGELVKELDRNATALGRVRHQPGVDPAMLDDVLSRI 92
[Close]
BLAST of mRNA_C-australica_Contig_10469.1.1 vs. uniprot
Match: A0A7C1X6V1_9GAMM (Cell division protein ZapD n=2 Tax=root TaxID=1 RepID=A0A7C1X6V1_9GAMM)

HSP 1 Score: 100 bits (249), Expect = 6.790e-24
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:   31 FEQPLNERVRTFLRLEHLFEQTRHYWQDPCPWGRRATLSTLLDILAILSRHDLRTEVGKELADQYTKLNRLRNHSGIDHARLDDIL 288
            +EQPLNER+RTF+RLEHLF+QT +  +    W  RAT++ L+DIL ILSR DL+TE+ KEL  Q   L RL+N  G+DH +LDDIL
Sbjct:    7 YEQPLNERMRTFMRLEHLFQQTAYSMRGFSVWDSRATIAGLIDILEILSRGDLKTEMLKELDHQQAALARLKNKHGVDHQQLDDIL 92
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10469.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
U2EBB4_9GAMM1.680e-2851.02Cell division protein ZapD n=2 Tax=Salinisphaera T... [more]
A0A423PNQ7_9GAMM1.680e-2853.06Cell division protein ZapD n=2 Tax=Salinisphaera T... [more]
A0A2Z3JAH4_9GAMM1.320e-2753.06Cell division protein ZapD n=1 Tax=Salinisphaera s... [more]
A0A2E0J236_9GAMM3.700e-2750.00Cell division protein ZapD n=2 Tax=Gammaproteobact... [more]
A0A4U0H265_9GAMM3.320e-2560.67Cell division protein ZapD n=2 Tax=Sinimarinibacte... [more]
UPI0005C1638F4.580e-2552.04cell division protein ZapD n=1 Tax=Algiphilus arom... [more]
UPI001CA757446.450e-2551.02cell division protein ZapD n=1 Tax=Algiphilus sp. ... [more]
A0A084IP39_SALHC2.480e-2446.94Cell division protein ZapD n=1 Tax=Salinisphaera h... [more]
UPI001907139F4.540e-2455.43cell division protein ZapD n=1 Tax=Rhabdochromatiu... [more]
A0A7C1X6V1_9GAMM6.790e-2458.14Cell division protein ZapD n=2 Tax=root TaxID=1 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10469contigC-australica_Contig_10469:2..301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1033802.SSPSH_000278
Preferred namezapD
PFAMsZapD
Model size300
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K18778
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007049,GO:0008150,GO:0009987,GO:0019954,GO:0022402,GO:0022414,GO:0032153,GO:0032505,GO:0042802,GO:0043093,GO:0044424,GO:0044444,GO:0044464,GO:0051301
Exons1
Evalue2.76e-29
EggNOG OGsCOG4582@1|root,COG4582@2|Bacteria,1MW69@1224|Proteobacteria,1RNPD@1236|Gammaproteobacteria
DescriptionCell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
Cds size300
COG categoryD
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586782.5718272-CDS-C-australica_Contig_10469:1..3011682586782.5718272-CDS-C-australica_Contig_10469:1..301Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10469 2..301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10469.1.1prot_C-australica_Contig_10469.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10469 2..301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10469.1.1

>prot_C-australica_Contig_10469.1.1 ID=prot_C-australica_Contig_10469.1.1|Name=mRNA_C-australica_Contig_10469.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=100bp
DSLTDNGLTCFEQPLNERVRTFLRLEHLFEQTRHYWQDPCPWGRRATLST
LLDILAILSRHDLRTEVGKELADQYTKLNRLRNHSGIDHARLDDILRDID
back to top

mRNA from alignment at C-australica_Contig_10469:2..301-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10469.1.1 ID=mRNA_C-australica_Contig_10469.1.1|Name=mRNA_C-australica_Contig_10469.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=300bp|location=Sequence derived from alignment at C-australica_Contig_10469:2..301- (Chrysoparadoxa australica CS_1217)
GACTCCTTGACCGATAACGGGCTTACCTGCTTCGAGCAGCCGCTGAACGA
ACGTGTGCGCACCTTCCTGCGGCTGGAGCATCTGTTCGAGCAGACCCGCC
ACTACTGGCAGGACCCCTGCCCCTGGGGCCGCCGTGCCACCCTGTCCACG
CTGCTGGACATCCTGGCCATCCTGTCGCGGCACGACCTGCGTACCGAAGT
GGGCAAGGAGCTCGCCGACCAGTACACCAAGCTGAATCGGCTACGTAATC
ATTCCGGAATCGATCATGCGCGTCTGGACGACATCCTGCGCGACATCGAC
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_10469:2..301-

>mRNA_C-australica_Contig_10469.1.1 ID=mRNA_C-australica_Contig_10469.1.1|Name=mRNA_C-australica_Contig_10469.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=300bp|location=Sequence derived from alignment at C-australica_Contig_10469:2..301- (Chrysoparadoxa australica CS_1217)
GACTCCTTGACCGATAACGGGCTTACCTGCTTCGAGCAGCCGCTGAACGA
ACGTGTGCGCACCTTCCTGCGGCTGGAGCATCTGTTCGAGCAGACCCGCC
ACTACTGGCAGGACCCCTGCCCCTGGGGCCGCCGTGCCACCCTGTCCACG
CTGCTGGACATCCTGGCCATCCTGTCGCGGCACGACCTGCGTACCGAAGT
GGGCAAGGAGCTCGCCGACCAGTACACCAAGCTGAATCGGCTACGTAATC
ATTCCGGAATCGATCATGCGCGTCTGGACGACATCCTGCGCGACATCGAC
back to top