mRNA_C-australica_Contig_1046.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1046.3.1
Unique NamemRNA_C-australica_Contig_1046.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1046.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1046contigC-australica_Contig_1046:12069..12643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size256
Hectar predicted targeting categoryother localisation
Exons3
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586781.9832413-CDS-C-australica_Contig_1046:12068..121491682586781.9832413-CDS-C-australica_Contig_1046:12068..12149Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1046 12069..12149 -
1682586781.9935887-CDS-C-australica_Contig_1046:12359..124641682586781.9935887-CDS-C-australica_Contig_1046:12359..12464Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1046 12360..12464 -
1682586782.0034485-CDS-C-australica_Contig_1046:12574..126431682586782.0034485-CDS-C-australica_Contig_1046:12574..12643Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1046 12575..12643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1046.3.1prot_C-australica_Contig_1046.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1046 12069..12643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1046.3.1

>prot_C-australica_Contig_1046.3.1 ID=prot_C-australica_Contig_1046.3.1|Name=mRNA_C-australica_Contig_1046.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=85bp
EYEKNLEDGVKHDHHTIHSLMLSVGDECHVLAALTIGARATLRDVRGLVA
AQAIGVLEALSKDVGHDVNEYSFIVGGVPIAPERE
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mRNA from alignment at C-australica_Contig_1046:12069..12643-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1046.3.1 ID=mRNA_C-australica_Contig_1046.3.1|Name=mRNA_C-australica_Contig_1046.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=575bp|location=Sequence derived from alignment at C-australica_Contig_1046:12069..12643- (Chrysoparadoxa australica CS_1217)
GAATATGAGAAGAATCTTGAAGATGGTGTCAAGCATGATCACCATACTAT
CCATTCCCTCATGTTGTCGGTAAGAGCACCAGGACTGGTGGCTGGTAGAA
ATATTACAATGGCAGTCTTTGTCTGATTTAAATGCTGCATGCCGATTTCC
CTGTTTTCCCTGTCAACCGGTATCAATAGGTTGGGGATGAATGCCATGTG
CTAGCTGCACTCACTATAGGGGCAAGAGCCACCCTTAGGGATGTGAGAGG
GCTAGTTGCGGCACAGGCTATTGGTGTTTTAGAGGTAAGCGTAGAAGAAG
GAGAGAGAGAAGAAGAAATGTGCGTGCCAGTTTGGATCAAATCATTTTGA
TTTATTATGGGTTATTTTATTTCTCTACCTAACAACAGCTTATCCTGGTC
TTGTTGATGCAATGTAAAGTTGCTTAGTCTATTCTGTTGCAACCGTATGC
TCAATAATGCAATGGCCCTCCCGTTTTGAACCACAACATTGCAGGCACTT
TCAAAGGATGTTGGTCATGATGTGAACGAGTACAGCTTTATAGTTGGGGG
AGTACCTATCGCTCCGGAGAGGGAG
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Coding sequence (CDS) from alignment at C-australica_Contig_1046:12069..12643-

>mRNA_C-australica_Contig_1046.3.1 ID=mRNA_C-australica_Contig_1046.3.1|Name=mRNA_C-australica_Contig_1046.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=255bp|location=Sequence derived from alignment at C-australica_Contig_1046:12069..12643- (Chrysoparadoxa australica CS_1217)
GAATATGAGAAGAATCTTGAAGATGGTGTCAAGCATGATCACCATACTAT
CCATTCCCTCATGTTGTCGGTTGGGGATGAATGCCATGTGCTAGCTGCAC
TCACTATAGGGGCAAGAGCCACCCTTAGGGATGTGAGAGGGCTAGTTGCG
GCACAGGCTATTGGTGTTTTAGAGGCACTTTCAAAGGATGTTGGTCATGA
TGTGAACGAGTACAGCTTTATAGTTGGGGGAGTACCTATCGCTCCGGAGA
GGGAG
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