mRNA_C-australica_Contig_10452.1.1 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_10452.1.1 vs. uniprot
Match: A0A222E9U1_9RHOB (High-affinity zinc uptake system membrane protein ZnuB n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E9U1_9RHOB) HSP 1 Score: 374 bits (959), Expect = 3.090e-129 Identity = 218/221 (98.64%), Postives = 219/221 (99.10%), Query Frame = 1
Query: 1 AAIHAVALALALSVPIFAGTLIVSLLVAFGVAQLSGRGYGADMVLGVVAHAALALGLVAASLLPGPRLNLEAYLFGDILAVSRSDLAVIWGGGALVAALIGWRWQALLTATVSPDLAAASGLNPERERVVLMLALALVVXXXLKVVGALLIGALLIIPAAAARPLSTTPEGMLAGTAAVGVVSALGGLWAAWTFDTPAGPSVVCAAAVLFAVAALARALRG 663
AAI VALALALSVPIFAGTLIVSLLVAFGVAQLSGRGYGADMVLGVVAHAALA+GLVAASLLPGPRLNLEAYLFGDILAVSRSDLAVIWGGGALVAALIGWRWQALLTATVSPDLAAASGLNPERERVVLMLALALVVXXXLKVVGALLIGALLIIPAAAARPLSTTPEGMLAGTAAVGVVSALGGLWAAWTFDTPAGPSVVCAAAVLFAVAALARALRG
Sbjct: 42 AAILGVALALALSVPIFAGTLIVSLLVAFGVAQLSGRGYGADMVLGVVAHAALAMGLVAASLLPGPRLNLEAYLFGDILAVSRSDLAVIWGGGALVAALIGWRWQALLTATVSPDLAAASGLNPERERVVLMLALALVVXXXLKVVGALLIGALLIIPAAAARPLSTTPEGMLAGTAAVGVVSALGGLWAAWTFDTPAGPSVVCAAAVLFAVAALARALRG 262
BLAST of mRNA_C-australica_Contig_10452.1.1 vs. uniprot
Match: UPI001C44E45E (metal ABC transporter permease n=1 Tax=Roseobacteraceae TaxID=2854170 RepID=UPI001C44E45E) HSP 1 Score: 324 bits (831), Expect = 1.070e-109 Identity = 186/221 (84.16%), Postives = 203/221 (91.86%), Query Frame = 1
Query: 1 AAIHAVALALALSVPIFAGTLIVSLLVAFGVAQLSGRGYGADMVLGVVAHAALALGLVAASLLPGPRLNLEAYLFGDILAVSRSDLAVIWGGGALVAALIGWRWQALLTATVSPDLAAASGLNPERERVVLMLALALVVXXXLKVVGALLIGALLIIPAAAARPLSTTPEGMLAGTAAVGVVSALGGLWAAWTFDTPAGPSVVCAAAVLFAVAALARALRG 663
AAI VALALALSVP+FAGTL V+L+VAFGVA+LSGRG+GADMVLGV AH ALALGLVAASLL GPRLNLEAYLFGDILAVSR DL VIW GGA VAALIGWRWQALLT+T+SPDLAAASGLNPERERV+LMLALALVVXX LKVVGALLIGALL+IPAAAARPLS+TPE MLAGTA VGVVSALGGLWAAWTFDTPAGPS+VCA+A LFA++++ + G
Sbjct: 42 AAILGVALALALSVPVFAGTLAVALVVAFGVARLSGRGFGADMVLGVAAHGALALGLVAASLLNGPRLNLEAYLFGDILAVSRMDLLVIWLGGAAVAALIGWRWQALLTSTISPDLAAASGLNPERERVILMLALALVVXXALKVVGALLIGALLVIPAAAARPLSSTPEQMLAGTATVGVVSALGGLWAAWTFDTPAGPSIVCASAALFALSSIFGRVTG 262
BLAST of mRNA_C-australica_Contig_10452.1.1 vs. uniprot
Match: A0A6F8QB31_9RHOB (Membrane protein n=6 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A6F8QB31_9RHOB) HSP 1 Score: 313 bits (803), Expect = 1.950e-105 Identity = 180/221 (81.45%), Postives = 196/221 (88.69%), Query Frame = 1
Query: 1 AAIHAVALALALSVPIFAGTLIVSLLVAFGVAQLSGRGYGADMVLGVVAHAALALGLVAASLLPGPRLNLEAYLFGDILAVSRSDLAVIWGGGALVAALIGWRWQALLTATVSPDLAAASGLNPERERVVLMLALALVVXXXLKVVGALLIGALLIIPAAAARPLSTTPEGMLAGTAAVGVVSALGGLWAAWTFDTPAGPSVVCAAAVLFAVAALARALRG 663
AAI VALALALSVP+FAGTL+V+LLVAFGVA+L+GRGY ADMVLGV AHAALA GLVAAS L GPRLNLEAYLFGDILAVS+ DLAVIWGGGA VAALIGWRWQALL +T+SPDLAAASG+NPERERV LMLALALV XXX KVVGALLI ALLIIPAAAARPLS TPEGMLAG A VGV++ALGGLWAAW+ DTPAGPS+VC AA+ F ++AL L G
Sbjct: 42 AAILGVALALALSVPVFAGTLVVALLVAFGVARLTGRGYAADMVLGVAAHAALATGLVAASFLSGPRLNLEAYLFGDILAVSKMDLAVIWGGGAAVAALIGWRWQALLLSTLSPDLAAASGVNPERERVTLMLALALVXXXXXKVVGALLIAALLIIPAAAARPLSRTPEGMLAGAATVGVIAALGGLWAAWSLDTPAGPSIVCVAAITFGISALGGRLLG 262
BLAST of mRNA_C-australica_Contig_10452.1.1 vs. uniprot
Match: A0A238KI08_9RHOB (High-affinity zinc uptake system membrane protein ZnuB n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238KI08_9RHOB) HSP 1 Score: 294 bits (753), Expect = 7.010e-98 Identity = 167/215 (77.67%), Postives = 193/215 (89.77%), Query Frame = 1
Query: 1 AAIHAVALALALSVPIFAGTLIVSLLVAFGVAQLSGRGYGADMVLGVVAHAALALGLVAASLLPGPRLNLEAYLFGDILAVSRSDLAVIWGGGALVAALIGWRWQALLTATVSPDLAAASGLNPERERVVLMLALALVVXXXLKVVGALLIGALLIIPAAAARPLSTTPEGMLAGTAAVGVVSALGGLWAAWTFDTPAGPSVVCAAAVLFAVAAL 645
AA+ VALALALSVP+FAGTL+V+L+ AFGVA+LSGRG ADMVLGV AH+ALALG+VAAS + GPRL+LEAYLFGDILAVS +DLAVIWGGG VA LI WRWQ LL ATVSPDLA ASG++P+RER++LMLALA XXXLKVVGALLIGALLI+PAAAARP+S TPEGMLAG +A+GV+SALGGLWAAW+FDTPAGPS+VCAAA LFA+++L
Sbjct: 42 AAVLGVALALALSVPVFAGTLVVALVTAFGVARLSGRGMAADMVLGVAAHSALALGIVAASFVQGPRLDLEAYLFGDILAVSVTDLAVIWGGGLAVAGLIFWRWQDLLIATVSPDLAVASGIDPDRERLILMLALAXXXXXXLKVVGALLIGALLIVPAAAARPMSRTPEGMLAGASALGVLSALGGLWAAWSFDTPAGPSIVCAAAALFALSSL 256
BLAST of mRNA_C-australica_Contig_10452.1.1 vs. uniprot
Match: A3K093_9RHOB (ABC-3 n=2 Tax=Sagittula TaxID=58842 RepID=A3K093_9RHOB) HSP 1 Score: 283 bits (725), Expect = 1.180e-93 Identity = 166/220 (75.45%), Postives = 188/220 (85.45%), Query Frame = 1
Query: 1 AAIHAVALALALSVPIFAGTLIVSLLVAFGVAQLSGRGYGADMVLGVVAHAALALGLVAASLLPGPRLNLEAYLFGDILAVSRSDLAVIWGGGALVAALIGWRWQALLTATVSPDLAAASGLNPERERVVLMLALALVVXXXLKVVGALLIGALLIIPAAAARPLSTTPEGMLAGTAAVGVVSALGGLWAAWTFDTPAGPSVVCAAAVLFAVAALARALR 660
AA+ VALALA+S P+FAGTL VA+L+GRGYGADMVLGV AH ALA GLVA SLL GPRL+LEAYLFGDILAV + DLAVIWGGGA+VAALIGWRWQAL+T+TVS DLA A+G++P+RER++LMLALALV XXXLKVVGALLIGALLIIPAAAARP S TPE MLAGTAA+GV+SALGGLW AW D PAGP+VVCAAA+LFAV+A+A R
Sbjct: 42 AAVLGVALALAISAPVFAGTLXXXXXXXXTVARLAGRGYGADMVLGVAAHGALAFGLVAVSLLEGPRLDLEAYLFGDILAVGKVDLAVIWGGGAVVAALIGWRWQALVTSTVSEDLAFAAGIDPKRERLILMLALALVXXXXLKVVGALLIGALLIIPAAAARPWSRTPEVMLAGTAALGVLSALGGLWGAWVLDLPAGPAVVCAAALLFAVSAVAGGRR 261
BLAST of mRNA_C-australica_Contig_10452.1.1 vs. uniprot
Match: A0A7W6DJV0_9RHOB (Zinc transport system permease protein n=1 Tax=Sagittula marina TaxID=943940 RepID=A0A7W6DJV0_9RHOB) HSP 1 Score: 280 bits (717), Expect = 2.000e-92 Identity = 164/216 (75.93%), Postives = 187/216 (86.57%), Query Frame = 1
Query: 1 AAIHAVALALALSVPIFAGTLIVSLLVAFGVAQLSGRGYGADMVLGVVAHAALALGLVAASLLPGPRLNLEAYLFGDILAVSRSDLAVIWGGGALVAALIGWRWQALLTATVSPDLAAASGLNPERERVVLMLALALVVXXXLKVVGALLIGALLIIPAAAARPLSTTPEGMLAGTAAVGVVSALGGLWAAWTFDTPAGPSVVCAAAVLFAVAALA 648
AA+ VALALALSVPIFA TL +LL+A VA LSGRG+ AD+VLGV AH ALALGLVA SL+ GPRL+LE+YLFGDILAV++ DLAVIWGGGA+VA LIGWRW L+T+TVS DLA A+G+NP+RE++ LMLALAL XXX KVVGALLIGALLIIPAAAARP S TPEGMLAGTAA+GV+SALGGLW AW FDTPAGPSVVCAAA+ F+V+ LA
Sbjct: 42 AAVLGVALALALSVPIFAATLATALLMALTVAWLSGRGHSADLVLGVAAHGALALGLVAVSLVEGPRLDLESYLFGDILAVTKRDLAVIWGGGAVVAVLIGWRWARLVTSTVSKDLAWAAGINPKREQLTLMLALALXXXXXXKVVGALLIGALLIIPAAAARPWSRTPEGMLAGTAALGVLSALGGLWGAWVFDTPAGPSVVCAAALFFSVSFLA 257
BLAST of mRNA_C-australica_Contig_10452.1.1 vs. uniprot
Match: UPI001ADF7F2B (metal ABC transporter permease n=1 Tax=Sagittula salina TaxID=2820268 RepID=UPI001ADF7F2B) HSP 1 Score: 270 bits (691), Expect = 1.660e-88 Identity = 161/212 (75.94%), Postives = 182/212 (85.85%), Query Frame = 1
Query: 1 AAIHAVALALALSVPIFAGTLIVSLLVAFGVAQLSGRGYGADMVLGVVAHAALALGLVAASLLPGPRLNLEAYLFGDILAVSRSDLAVIWGGGALVAALIGWRWQALLTATVSPDLAAASGLNPERERVVLMLALALVVXXXLKVVGALLIGALLIIPAAAARPLSTTPEGMLAGTAAVGVVSALGGLWAAWTFDTPAGPSVVCAAAVLFAV 636
AA+ VALALA S+PIFAGTL V+L++A VA L+GRG+GADMVLGV AH ALA GL+A SL+ GPRL+LE+YLFGDILAV+++DLAVIWGGGALVAALI RW L+TATVS DLA A+G++P RER+VLMLALAL XXX KVVGALLIGALLIIPAAAARP S TPEGMLAG A +GV SALGGLWAAW DTPAGPSVVCAA VLFA+
Sbjct: 42 AAVLGVALALASSLPIFAGTLAVALVMALTVAWLAGRGHGADMVLGVAAHGALAFGLLAVSLVEGPRLDLESYLFGDILAVTKADLAVIWGGGALVAALILTRWGRLVTATVSEDLAWAAGIDPRRERLVLMLALALXXXXXXKVVGALLIGALLIIPAAAARPWSRTPEGMLAGAATLGVASALGGLWAAWVLDTPAGPSVVCAAVVLFAL 253
BLAST of mRNA_C-australica_Contig_10452.1.1 vs. uniprot
Match: A0A0P1G206_9RHOB (High-affinity zinc uptake system membrane protein ZnuB n=1 Tax=Tropicibacter naphthalenivorans TaxID=441103 RepID=A0A0P1G206_9RHOB) HSP 1 Score: 265 bits (678), Expect = 1.720e-86 Identity = 149/221 (67.42%), Postives = 183/221 (82.81%), Query Frame = 1
Query: 1 AAIHAVALALALSVPIFAGTLIVSLLVAFGVAQLSGRGYGADMVLGVVAHAALALGLVAASLLPGPRLNLEAYLFGDILAVSRSDLAVIWGGGALVAALIGWRWQALLTATVSPDLAAASGLNPERERVVLMLALALVVXXXLKVVGALLIGALLIIPAAAARPLSTTPEGMLAGTAAVGVVSALGGLWAAWTFDTPAGPSVVCAAAVLFAVAALARALRG 663
AAI VALALA +PIFAGTL V+++VAF VA+L+GRG+GADM+LGV +H+ALA+GLVA + GPRL+L+AYLFGDILAV ++DLAVIWGG A V ALI WRW+ALL ATVS DLA ASG NP+RE +LMLALA+VV +KVVGALLIGALLIIPAAAARP + TPE M+ G +G +++LGGLW AW +DTPAGPS+VCAAA+LFA++ +A+ RG
Sbjct: 42 AAILGVALALAFELPIFAGTLAVAVVVAFMVAKLTGRGFGADMILGVASHSALAIGLVAVAFAQGPRLDLQAYLFGDILAVGKADLAVIWGGAAAVFALIAWRWRALLMATVSEDLAWASGGNPDREGRILMLALAIVVAVAIKVVGALLIGALLIIPAAAARPFARTPEQMVLGAMGLGCLASLGGLWGAWEWDTPAGPSIVCAAAILFALSLIAKGGRG 262
BLAST of mRNA_C-australica_Contig_10452.1.1 vs. uniprot
Match: A0A238L567_9RHOB (High-affinity zinc uptake system membrane protein ZnuB n=1 Tax=Pelagimonas varians TaxID=696760 RepID=A0A238L567_9RHOB) HSP 1 Score: 256 bits (653), Expect = 1.070e-82 Identity = 149/215 (69.30%), Postives = 178/215 (82.79%), Query Frame = 1
Query: 1 AAIHAVALALALSVPIFAGTLIVSLLVAFGVAQLSGRGYGADMVLGVVAHAALALGLVAASLLPGPRLNLEAYLFGDILAVSRSDLAVIWGGGALVAALIGWRWQALLTATVSPDLAAASGLNPERERVVLMLALALVVXXXLKVVGALLIGALLIIPAAAARPLSTTPEGMLAGTAAVGVVSALGGLWAAWTFDTPAGPSVVCAAAVLFAVAAL 645
AAI VALALA SVP+FAGTL+VSL +AF VA L+ RG GADMVLGV +HAALA GLVA +L+ GPRL+L+AYLFGDILAV ++DLA+IWGG LV L+ WRWQA+L AT+SPDLA AS ++PERE+ VLMLALA XXX+K+VGALLIGALLIIPAAAARP + TPE M+ G +GV +AL GLW AW FDTPAGPS+VCAAAV+FA++ +
Sbjct: 42 AAILGVALALAASVPVFAGTLLVSLGMAFAVAGLTKRGVGADMVLGVASHAALAFGLVAVTLVEGPRLDLQAYLFGDILAVGKTDLALIWGGAILVWILMVWRWQAMLLATLSPDLAYASSVDPEREKQVLMLALAXXXXXXIKIVGALLIGALLIIPAAAARPFARTPEQMVIGAVGLGVCAALLGLWGAWEFDTPAGPSIVCAAAVIFAISTI 256
BLAST of mRNA_C-australica_Contig_10452.1.1 vs. uniprot
Match: A0A4S4NCL0_9RHOB (Uncharacterized protein n=1 Tax=Aliishimia ponticola TaxID=2499833 RepID=A0A4S4NCL0_9RHOB) HSP 1 Score: 249 bits (636), Expect = 4.620e-80 Identity = 140/220 (63.64%), Postives = 174/220 (79.09%), Query Frame = 1
Query: 1 AAIHAVALALALSVPIFAGTLIVSLLVAFGVAQLSGRGYGADMVLGVVAHAALALGLVAASLLPGPRLNLEAYLFGDILAVSRSDLAVIWGGGALVAALIGWRWQALLTATVSPDLAAASGLNPERERVVLMLALALVVXXXLKVVGALLIGALLIIPAAAARPLSTTPEGMLAGTAAVGVVSALGGLWAAWTFDTPAGPSVVCAAAVLFAVAALARALR 660
AAI VA+ALAL +P+F L+V+L +A V L+GRGY D +LGV+AH+ALA+GLVAAS L G R++L AYLFGDILAVS+ D+A+IWGGGALV AL+ WRWQALLTAT++PDLA A+GL+P RE++VL L LALVV +KVVG LLI ALL+IPAA ARP + TPE M A A +GV++ALGGL A+W FDTPAGPS+VCAAA LF ++ + LR
Sbjct: 42 AAILGVAIALALDIPVFGAALVVALCMALAVTALAGRGYATDTLLGVMAHSALAIGLVAASFLSGVRIDLMAYLFGDILAVSKGDIALIWGGGALVVALLFWRWQALLTATLNPDLAIAAGLDPRREQLVLTLTLALVVAMAIKVVGVLLIAALLLIPAATARPFARTPETMAALAAGIGVLAALGGLRASWVFDTPAGPSIVCAAAALFLLSVIVSQLR 261 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10452.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10452.1.1 >prot_C-australica_Contig_10452.1.1 ID=prot_C-australica_Contig_10452.1.1|Name=mRNA_C-australica_Contig_10452.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=222bp AAIHAVALALALSVPIFAGTLIVSLLVAFGVAQLSGRGYGADMVLGVVAHback to top mRNA from alignment at C-australica_Contig_10452:154..819- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10452.1.1 ID=mRNA_C-australica_Contig_10452.1.1|Name=mRNA_C-australica_Contig_10452.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=666bp|location=Sequence derived from alignment at C-australica_Contig_10452:154..819- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10452:154..819- >mRNA_C-australica_Contig_10452.1.1 ID=mRNA_C-australica_Contig_10452.1.1|Name=mRNA_C-australica_Contig_10452.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=666bp|location=Sequence derived from alignment at C-australica_Contig_10452:154..819- (Chrysoparadoxa australica CS_1217)back to top |