mRNA_C-australica_Contig_10443.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10443.2.1
Unique NamemRNA_C-australica_Contig_10443.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10443.2.1 vs. uniprot
Match: A0A1B6Y5Q0_9BACT (Uncharacterized protein n=6 Tax=unclassified Balneola TaxID=2615059 RepID=A0A1B6Y5Q0_9BACT)

HSP 1 Score: 213 bits (542), Expect = 4.060e-67
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 1 
Query:    1 ITNCDPQEAYDLLTSIKGIGPTAGQDLMMMRGRPDAVFPSNKKKDEEKGLRRWIIASYGENPHTISEKKFQSLISNWNGFEGAALEFLYVNWIISEKEKKAR 306
            ITNCDPQEAYDLLT IKGIGPTAGQDLMMMRGRPDAVFPSNKKKDEEKGLRRWIIASYGENPHTISEKKFQSLISNWNGFEGAALEFLYVNWIISEKEKKA+
Sbjct:  213 ITNCDPQEAYDLLTGIKGIGPTAGQDLMMMRGRPDAVFPSNKKKDEEKGLRRWIIASYGENPHTISEKKFQSLISNWNGFEGAALEFLYVNWIISEKEKKAK 314
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BLAST of mRNA_C-australica_Contig_10443.2.1 vs. uniprot
Match: UPI000CD8120A (hypothetical protein n=2 Tax=Gracilimonas TaxID=649462 RepID=UPI000CD8120A)

HSP 1 Score: 168 bits (425), Expect = 1.770e-49
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = 1 
Query:    1 ITNCDPQEAYDLLTSIKGIGPTAGQDLMMMRGRPDAVFPSNKKKDEEKGLRRWIIASYGENPHTISEKKFQSLISNWNGFEGAALEFLYVNWIISEKEKKARE 309
            +  CDPQE YD++T+IKGIGPT+GQDLMMMRGR DAVFPSNKK  EEKGLRRWII SYGE+PH  SE++FQ LI NW G+E AALEFLYVN+++ EKE+KA++
Sbjct:  213 LMECDPQEFYDIITNIKGIGPTSGQDLMMMRGRTDAVFPSNKKSGEEKGLRRWIIHSYGEDPHNTSEERFQDLIRNWKGYEAAALEFLYVNYVLKEKEEKAKK 315
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BLAST of mRNA_C-australica_Contig_10443.2.1 vs. uniprot
Match: A0A2D9FSC7_9BACT (Uncharacterized protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D9FSC7_9BACT)

HSP 1 Score: 167 bits (423), Expect = 3.550e-49
Identity = 73/103 (70.87%), Postives = 89/103 (86.41%), Query Frame = 1 
Query:    1 ITNCDPQEAYDLLTSIKGIGPTAGQDLMMMRGRPDAVFPSNKKKDEEKGLRRWIIASYGENPHTISEKKFQSLISNWNGFEGAALEFLYVNWIISEKEKKARE 309
            + +CDPQE YDL+T IKGIGPT+GQDLMMMRGR DAVFPSNKK  EEKGLRRWII SYGE+PH  SE++FQ LI NW G+E +ALEFLYVN+++ EKE++A++
Sbjct:  213 LMDCDPQEFYDLITDIKGIGPTSGQDLMMMRGRTDAVFPSNKKSGEEKGLRRWIIGSYGEDPHNTSEERFQELIQNWKGYEASALEFLYVNYVLKEKEQQAKK 315
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BLAST of mRNA_C-australica_Contig_10443.2.1 vs. uniprot
Match: A0A2D8CKI0_9BACT (Uncharacterized protein n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CKI0_9BACT)

HSP 1 Score: 166 bits (419), Expect = 1.420e-48
Identity = 74/103 (71.84%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 ITNCDPQEAYDLLTSIKGIGPTAGQDLMMMRGRPDAVFPSNKKKDEEKGLRRWIIASYGENPHTISEKKFQSLISNWNGFEGAALEFLYVNWIISEKEKKARE 309
            + NC+PQE YD +TSIKGIGPT+GQDLMMMRGR DAVFPSNKK  EEKGLRRWII SYGE+PH  SE++FQ LI NW G+E AALEFLY N+I+ EKE++A++
Sbjct:  213 LMNCEPQEFYDKITSIKGIGPTSGQDLMMMRGRTDAVFPSNKKSGEEKGLRRWIIWSYGEDPHNTSEERFQELIQNWKGYESAALEFLYANYILKEKEEQAKK 315
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BLAST of mRNA_C-australica_Contig_10443.2.1 vs. uniprot
Match: A0A6A8QAT6_9BACT (Uncharacterized protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8QAT6_9BACT)

HSP 1 Score: 165 bits (417), Expect = 2.830e-48
Identity = 74/103 (71.84%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 ITNCDPQEAYDLLTSIKGIGPTAGQDLMMMRGRPDAVFPSNKKKDEEKGLRRWIIASYGENPHTISEKKFQSLISNWNGFEGAALEFLYVNWIISEKEKKARE 309
            ++ CDPQ  YD +TSIKGIGPT+GQDLMMMRGR DAVFPSNKK  EEKGLRRWII SYGE+PH  SE+KFQ LI+NW G+E +ALEFLY N+I+ EKE+KA++
Sbjct:  213 LSECDPQTFYDEITSIKGIGPTSGQDLMMMRGRTDAVFPSNKKGSEEKGLRRWIIYSYGEDPHNTSEEKFQELIANWKGYEASALEFLYANYILKEKEQKAKK 315
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BLAST of mRNA_C-australica_Contig_10443.2.1 vs. uniprot
Match: UPI00036F8AA7 (hypothetical protein n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI00036F8AA7)

HSP 1 Score: 159 bits (401), Expect = 7.520e-46
Identity = 73/104 (70.19%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    1 ITNCDPQEAYDLLTSIKGIGPTAGQDLMMMRGRPDAVFPSNKKKDEEKGLRRWIIASYGENPHTISEKKFQSLISNWNGFEGAALEFLYVNWIISEKEKKAREK 312
            I NCDP  AY+ LT+IKGIGPTA QD+MMMR R DAVFPSNKKKDEEKGLRRWII SYG +PH  +E++FQ +I NW G E AALEFL+VN++I EKE+KA+ K
Sbjct:  213 IMNCDPTTAYEELTNIKGIGPTAAQDIMMMRARTDAVFPSNKKKDEEKGLRRWIIWSYGGDPHNTTEEEFQQMIQNWQGQESAALEFLHVNYVIKEKEQKAKAK 316
[Close]
BLAST of mRNA_C-australica_Contig_10443.2.1 vs. uniprot
Match: A0A3D1GES0_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1GES0_9BACT)

HSP 1 Score: 151 bits (381), Expect = 3.660e-45
Identity = 65/104 (62.50%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:    1 ITNCDPQEAYDLLTSIKGIGPTAGQDLMMMRGRPDAVFPSNKKKDEEKGLRRWIIASYGENPHTISEKKFQSLISNWNGFEGAALEFLYVNWIISEKEKKAREK 312
            ++ CDP   Y+ LT+I+GIGP+AGQD+MMMRGR D+VFPSNK K EEKGLRRWII SYG +P   +E++F+  + NW G+E AALEF+YVNWI++EKEK+A+ K
Sbjct:   25 LSTCDPLTCYNTLTNIRGIGPSAGQDIMMMRGRTDSVFPSNKHKGEEKGLRRWIIWSYGGDPGNYTEEEFEGYLKNWTGYEAAALEFMYVNWILTEKEKQAKSK 128
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BLAST of mRNA_C-australica_Contig_10443.2.1 vs. uniprot
Match: A0A521C4D3_9BACT (3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521C4D3_9BACT)

HSP 1 Score: 156 bits (394), Expect = 8.030e-45
Identity = 69/103 (66.99%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    1 ITNCDPQEAYDLLTSIKGIGPTAGQDLMMMRGRPDAVFPSNKKKDEEKGLRRWIIASYGENPHTISEKKFQSLISNWNGFEGAALEFLYVNWIISEKEKKARE 309
            +  CDP+  Y+ +T IKGIGPT+GQDLMMMR R DAVFPS KKK EEKGLRRWII SYGE+PH  SE++FQ LI+NW G+E AALEFLYVN+++ EKE++A++
Sbjct:  213 LMKCDPETFYNTITKIKGIGPTSGQDLMMMRARTDAVFPSVKKKGEEKGLRRWIIWSYGEDPHNTSEERFQELITNWEGYEAAALEFLYVNYVLKEKEEQAKK 315
[Close]
BLAST of mRNA_C-australica_Contig_10443.2.1 vs. uniprot
Match: UPI001F3F62B3 (hypothetical protein n=1 Tax=Rhodohalobacter sp. 614A TaxID=2908649 RepID=UPI001F3F62B3)

HSP 1 Score: 146 bits (369), Expect = 4.680e-41
Identity = 65/101 (64.36%), Postives = 80/101 (79.21%), Query Frame = 1 
Query:    7 NCDPQEAYDLLTSIKGIGPTAGQDLMMMRGRPDAVFPSNKKKDEEKGLRRWIIASYGENPHTISEKKFQSLISNWNGFEGAALEFLYVNWIISEKEKKARE 309
            + DPQE YD ++ IKGIGPT GQDLM+ R R DAVFPSN+ K EEKGLR+WII SY  +P   SEK+FQS I NW G+E AA+EFL+VNW+IS K+KKA++
Sbjct:  216 DADPQEFYDSISEIKGIGPTTGQDLMLFRERTDAVFPSNRTKGEEKGLRKWIIMSYDGDPSNTSEKEFQSFIKNWKGYEAAAIEFLFVNWVISSKKKKAKK 316
[Close]
BLAST of mRNA_C-australica_Contig_10443.2.1 vs. uniprot
Match: A0A6M1T5I3_9BACT (Uncharacterized protein n=1 Tax=Balneolaceae bacterium YR4-1 TaxID=2709311 RepID=A0A6M1T5I3_9BACT)

HSP 1 Score: 145 bits (366), Expect = 1.310e-40
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 1 
Query:    1 ITNCDPQEAYDLLTSIKGIGPTAGQDLMMMRGRPDAVFPSNKKKDEEKGLRRWIIASYGENPHTISEKKFQSLISNWNGFEGAALEFLYVNWIISEKEKKARE 309
            +  C PQ  YD +  ++G+GPT+ Q LM+ R R DAVFPSNK K EEKGLR+WI  SYGE+P TISE+ FQ LISNW G+E AA+EF++VNW+++EKEKK ++
Sbjct:  213 LETCQPQVFYDTMRKVRGVGPTSAQQLMLFRERTDAVFPSNKSKGEEKGLRKWIAMSYGEDPDTISEEDFQKLISNWEGYEAAAIEFMFVNWVLTEKEKKRKK 315
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10443.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B6Y5Q0_9BACT4.060e-6798.04Uncharacterized protein n=6 Tax=unclassified Balne... [more]
UPI000CD8120A1.770e-4971.84hypothetical protein n=2 Tax=Gracilimonas TaxID=64... [more]
A0A2D9FSC7_9BACT3.550e-4970.87Uncharacterized protein n=1 Tax=Balneola sp. TaxID... [more]
A0A2D8CKI0_9BACT1.420e-4871.84Uncharacterized protein n=2 Tax=Balneolaceae TaxID... [more]
A0A6A8QAT6_9BACT2.830e-4871.84Uncharacterized protein n=1 Tax=Balneolaceae bacte... [more]
UPI00036F8AA77.520e-4670.19hypothetical protein n=1 Tax=Balneola vulgaris Tax... [more]
A0A3D1GES0_9BACT3.660e-4562.50Uncharacterized protein (Fragment) n=1 Tax=Balneol... [more]
A0A521C4D3_9BACT8.030e-4566.993-methyladenine DNA glycosylase/8-oxoguanine DNA g... [more]
UPI001F3F62B34.680e-4164.36hypothetical protein n=1 Tax=Rhodohalobacter sp. 6... [more]
A0A6M1T5I3_9BACT1.310e-4059.22Uncharacterized protein n=1 Tax=Balneolaceae bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10443contigC-australica_Contig_10443:496..819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1121104.AQXH01000001_gene1664
Preferred namealkA
PFAMsHhH-GPD,OGG_N
Model size324
Max annot lvl2|Bacteria
KEGG koko:K03660
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.23e-46
EggNOG OGsCOG0122@1|root,COG0122@2|Bacteria
EC4.2.99.18
Description3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
Cds size324
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586780.9969356-CDS-C-australica_Contig_10443:495..8191682586780.9969356-CDS-C-australica_Contig_10443:495..819Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10443 496..819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10443.2.1prot_C-australica_Contig_10443.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10443 496..819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10443.2.1

>prot_C-australica_Contig_10443.2.1 ID=prot_C-australica_Contig_10443.2.1|Name=mRNA_C-australica_Contig_10443.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=108bp
ITNCDPQEAYDLLTSIKGIGPTAGQDLMMMRGRPDAVFPSNKKKDEEKGL
RRWIIASYGENPHTISEKKFQSLISNWNGFEGAALEFLYVNWIISEKEKK
AREKTDR*
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mRNA from alignment at C-australica_Contig_10443:496..819-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10443.2.1 ID=mRNA_C-australica_Contig_10443.2.1|Name=mRNA_C-australica_Contig_10443.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=324bp|location=Sequence derived from alignment at C-australica_Contig_10443:496..819- (Chrysoparadoxa australica CS_1217)
ATTACAAATTGTGATCCTCAAGAGGCTTATGATCTGCTAACCAGTATCAA
AGGTATTGGTCCTACTGCAGGACAAGATCTTATGATGATGAGAGGCAGAC
CGGATGCTGTTTTTCCCAGCAACAAAAAGAAAGATGAAGAAAAAGGACTG
CGCCGTTGGATCATTGCCAGTTATGGTGAAAATCCGCACACCATCAGTGA
AAAGAAATTCCAAAGTCTGATCTCAAACTGGAATGGATTTGAAGGGGCTG
CATTGGAGTTTTTATATGTGAATTGGATCATCAGCGAAAAAGAGAAGAAG
GCTAGAGAAAAAACAGATAGGTAG
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Coding sequence (CDS) from alignment at C-australica_Contig_10443:496..819-

>mRNA_C-australica_Contig_10443.2.1 ID=mRNA_C-australica_Contig_10443.2.1|Name=mRNA_C-australica_Contig_10443.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=324bp|location=Sequence derived from alignment at C-australica_Contig_10443:496..819- (Chrysoparadoxa australica CS_1217)
ATTACAAATTGTGATCCTCAAGAGGCTTATGATCTGCTAACCAGTATCAA
AGGTATTGGTCCTACTGCAGGACAAGATCTTATGATGATGAGAGGCAGAC
CGGATGCTGTTTTTCCCAGCAACAAAAAGAAAGATGAAGAAAAAGGACTG
CGCCGTTGGATCATTGCCAGTTATGGTGAAAATCCGCACACCATCAGTGA
AAAGAAATTCCAAAGTCTGATCTCAAACTGGAATGGATTTGAAGGGGCTG
CATTGGAGTTTTTATATGTGAATTGGATCATCAGCGAAAAAGAGAAGAAG
GCTAGAGAAAAAACAGATAGGTAG
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