mRNA_C-australica_Contig_10443.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10443.1.1
Unique NamemRNA_C-australica_Contig_10443.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10443.1.1 vs. uniprot
Match: A0A1B6Y5P6_9BACT (Fasciclin n=2 Tax=unclassified Balneola TaxID=2615059 RepID=A0A1B6Y5P6_9BACT)

HSP 1 Score: 236 bits (603), Expect = 5.730e-78
Identity = 119/126 (94.44%), Postives = 125/126 (99.21%), Query Frame = 1
Query:    1 ADLEATLQSEGPYTVFAPTNEAFENLPEGVLNELLKPENKEQLIAVLTYHVIPGEVMSDDITETMKAKTIQGSNASVKSNGESVMIENAEVVKADMDASNGVVHVIDEVILPPSIKKALNSSKSDY 378
            ADLEAT QSEGPYTVFAPTNEAFENLPEGVLNELLKPENKE+L+AVLTYHV+PGEVMSDD+T+TMKAKTIQGSNAS+KSNGESVMIENAEVVKADMDASNGVVHVIDEVILPPSIKKALNSSKSDY
Sbjct:   51 ADLEATFQSEGPYTVFAPTNEAFENLPEGVLNELLKPENKEKLLAVLTYHVVPGEVMSDDVTKTMKAKTIQGSNASIKSNGESVMIENAEVVKADMDASNGVVHVIDEVILPPSIKKALNSSKSDY 176          
BLAST of mRNA_C-australica_Contig_10443.1.1 vs. uniprot
Match: UPI000CD86C3B (fasciclin domain-containing protein n=1 Tax=Gracilimonas amylolytica TaxID=1749045 RepID=UPI000CD86C3B)

HSP 1 Score: 164 bits (416), Expect = 1.850e-49
Identity = 85/125 (68.00%), Postives = 101/125 (80.80%), Query Frame = 1
Query:    1 ADLEATLQSEGPYTVFAPTNEAFENLPEGVLNELLKPENKEQLIAVLTYHVIPGEVMSDDITETMKAKTIQGSNASVKSNGESVMIENAEVVKADMDASNGVVHVIDEVILPPSIKKALNSSKSD 375
            A L  TLQ +GP+TVFAPTN AFE LPEGVL  LLKPENK+QL AVLTYHV+P EVMS D+ + MKA T++GS A+V  N   VM++NA VV AD+DASNGVVHVID VILPPSIK+AL ++KS+
Sbjct:   50 AGLVETLQGDGPFTVFAPTNAAFEALPEGVLEMLLKPENKDQLTAVLTYHVVPAEVMSGDLEDGMKAGTVEGSEATVTINYGDVMVDNANVVMADIDASNGVVHVIDAVILPPSIKEALAANKSE 174          
BLAST of mRNA_C-australica_Contig_10443.1.1 vs. uniprot
Match: A0A2D9FRC8_9BACT (Fasciclin n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D9FRC8_9BACT)

HSP 1 Score: 161 bits (408), Expect = 3.440e-48
Identity = 83/124 (66.94%), Postives = 98/124 (79.03%), Query Frame = 1
Query:    1 ADLEATLQSEGPYTVFAPTNEAFENLPEGVLNELLKPENKEQLIAVLTYHVIPGEVMSDDITETMKAKTIQGSNASVKSNGESVMIENAEVVKADMDASNGVVHVIDEVILPPSIKKALNSSKS 372
            A L  TLQSEGP+TVFAPTNEAFE LPEGVL  LLKPENK++L AVLTYHV+PG+VMS D+ + M A+T++GS A +  N    M++NA V  AD++ASNGVVHVID VILPPSIKKAL S  S
Sbjct:   50 AGLVETLQSEGPFTVFAPTNEAFEALPEGVLEMLLKPENKDKLTAVLTYHVVPGKVMSGDLKDGMMAETVEGSKAEISLNYGKAMVDNATVAMADIEASNGVVHVIDTVILPPSIKKALASGDS 173          
BLAST of mRNA_C-australica_Contig_10443.1.1 vs. uniprot
Match: UPI000372A87A (fasciclin domain-containing protein n=1 Tax=Gracilimonas tropica TaxID=454600 RepID=UPI000372A87A)

HSP 1 Score: 157 bits (398), Expect = 1.170e-46
Identity = 80/124 (64.52%), Postives = 98/124 (79.03%), Query Frame = 1
Query:    1 ADLEATLQSEGPYTVFAPTNEAFENLPEGVLNELLKPENKEQLIAVLTYHVIPGEVMSDDITETMKAKTIQGSNASVKSNGESVMIENAEVVKADMDASNGVVHVIDEVILPPSIKKALNSSKS 372
            A L  TLQS+GP+TVFAPTNEAFE LPEG L+ LLKPENK++L AVLTYHV+P EVMS D+   M A+T++GS A +K       ++ A+V  AD+DASNGVVHVID+VILPPSI+KAL S+KS
Sbjct:   50 AGLVETLQSDGPFTVFAPTNEAFEALPEGTLDMLLKPENKDKLTAVLTYHVVPAEVMSSDLKNGMMAETVEGSKAKIKLKDGMAWVDGAKVAMADIDASNGVVHVIDKVILPPSIEKALASNKS 173          
BLAST of mRNA_C-australica_Contig_10443.1.1 vs. uniprot
Match: UPI00037A22D3 (fasciclin domain-containing protein n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI00037A22D3)

HSP 1 Score: 157 bits (396), Expect = 1.490e-46
Identity = 79/119 (66.39%), Postives = 98/119 (82.35%), Query Frame = 1
Query:    4 DLEATLQSEGPYTVFAPTNEAFENLPEGVLNELLKPENKEQLIAVLTYHVIPGEVMSDDITETMKAKTIQGSNASVKSNGESVMIENAEVVKADMDASNGVVHVIDEVILPPSIKKALN 360
            DL ATLQSEGP+TVFAPTNEAF  LPEG+L+ LLKPENK++L+AVLTYHV+PG+VMS  I + MKAK+++GS  ++K     VM++NA V  AD+ A+NGVVHVID VILPPSI KAL+
Sbjct:   51 DLVATLQSEGPFTVFAPTNEAFAALPEGILDMLLKPENKDKLVAVLTYHVVPGKVMSKSIKDGMKAKSVEGSTITLKKGYGKVMVDNATVAMADVVATNGVVHVIDTVILPPSIVKALS 169          
BLAST of mRNA_C-australica_Contig_10443.1.1 vs. uniprot
Match: A0A2D8CG39_9BACT (Fasciclin n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CG39_9BACT)

HSP 1 Score: 153 bits (386), Expect = 7.270e-45
Identity = 78/125 (62.40%), Postives = 97/125 (77.60%), Query Frame = 1
Query:    1 ADLEATLQSEGPYTVFAPTNEAFENLPEGVLNELLKPENKEQLIAVLTYHVIPGEVMSDDITETMKAKTIQGSNASVKSNGESVMIENAEVVKADMDASNGVVHVIDEVILPPSIKKALNSSKSD 375
            A L  TLQS+GP+TVFAPTN AFE LPEGVL  LLKPENK++L AVLTYHV+ G+VMS D+ + M A T++GS A +  N   V ++ A V  AD++ASNGVVHVID +ILPPSI+KAL S++SD
Sbjct:   50 AGLVETLQSDGPFTVFAPTNAAFEALPEGVLEMLLKPENKDKLTAVLTYHVVSGKVMSGDLKDGMMATTVEGSKAEISINYGKVKVDGANVAMADIEASNGVVHVIDAIILPPSIQKALASNESD 174          
BLAST of mRNA_C-australica_Contig_10443.1.1 vs. uniprot
Match: A0A521E1L3_9BACT (Uncaracterized surface protein containing fasciclin (FAS1) repeats n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521E1L3_9BACT)

HSP 1 Score: 151 bits (382), Expect = 2.610e-44
Identity = 77/125 (61.60%), Postives = 97/125 (77.60%), Query Frame = 1
Query:    1 ADLEATLQSEGPYTVFAPTNEAFENLPEGVLNELLKPENKEQLIAVLTYHVIPGEVMSDDITETMKAKTIQGSNASVKSNGESVMIENAEVVKADMDASNGVVHVIDEVILPPSIKKALNSSKSD 375
            A L  TLQS+GP+TVFAPTNEAF  LPEG L  LLKPENK++L AVLTYHV+P +VMS D+ + M A+T+QGS A++K       ++ A+V  AD++ASNGVVHVID+VILPPSI+KAL SS  +
Sbjct:   49 AGLVETLQSDGPFTVFAPTNEAFAALPEGTLEMLLKPENKDKLTAVLTYHVVPAKVMSGDLKDGMMAETVQGSKATIKLKDGMAWVDGAKVAMADVNASNGVVHVIDKVILPPSIEKALASSDEE 173          
BLAST of mRNA_C-australica_Contig_10443.1.1 vs. uniprot
Match: I5BWS5_9BACT (Beta-ig-h3/fasciclin n=1 Tax=Nitritalea halalkaliphila LW7 TaxID=1189621 RepID=I5BWS5_9BACT)

HSP 1 Score: 143 bits (361), Expect = 6.090e-42
Identity = 70/112 (62.50%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    4 DLEATLQSEGPYTVFAPTNEAFENLPEGVLNELLKPENKEQLIAVLTYHVIPGEVMSDDITETMKAKTIQGSNASVKSNGESVMIENAEVVKADMDASNGVVHVIDEVILPP 339
            DL  TLQ +GP+TVFAP+NEAF  LP G + ELLKPENK QL+AVLTYHV+PG+V S D+ + MKAKT QGS  ++       M+ NA V  AD++ASNGVVHVID VILPP
Sbjct:    5 DLVGTLQGDGPFTVFAPSNEAFSKLPAGTVEELLKPENKAQLVAVLTYHVVPGKVYSKDLKDGMKAKTAQGSEVTISLKDGKAMVNNANVATADIEASNGVVHVIDAVILPP 116          
BLAST of mRNA_C-australica_Contig_10443.1.1 vs. uniprot
Match: A0A1B1A499_9RHOB (Nex18 symbiotically induced protein n=9 Tax=Rhodobacterales TaxID=204455 RepID=A0A1B1A499_9RHOB)

HSP 1 Score: 144 bits (363), Expect = 1.120e-41
Identity = 68/114 (59.65%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 ADLEATLQSEGPYTVFAPTNEAFENLPEGVLNELLKPENKEQLIAVLTYHVIPGEVMSDDITETMKAKTIQGSNASVKSNGESVMIENAEVVKADMDASNGVVHVIDEVILPPS 342
            ADL  TL+ +GP+TVFAPT+ AFE LPEG + ELLKPENKEQLI++LTYHV+PG+VMS D+T+ MKA T+QG+  +V  +G   M++ A+V++AD++A+NG++HVID+VI+P S
Sbjct:   48 ADLVETLKGDGPFTVFAPTDAAFEALPEGTVEELLKPENKEQLISILTYHVVPGKVMSSDLTDGMKAATVQGAEITVDIDG-GAMVDEAKVIQADIEAANGIIHVIDKVIMPGS 160          
BLAST of mRNA_C-australica_Contig_10443.1.1 vs. uniprot
Match: Q1GE58_RUEST (Beta-Ig-H3/fasciclin n=1 Tax=Ruegeria sp. (strain TM1040) TaxID=292414 RepID=Q1GE58_RUEST)

HSP 1 Score: 143 bits (360), Expect = 3.210e-41
Identity = 72/115 (62.61%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 ADLEATLQSEGPYTVFAPTNEAFENLPEGVLNELLKPENKEQLIAVLTYHVIPGEVMSDDITETMKAKTIQGSNASVK-SNGESVMIENAEVVKADMDASNGVVHVIDEVILPPS 342
            ADL  TL+SEGP+TVFAPT+ AFE LPEG +  LLKPENK+QLIA+LTYHV+PG+VMS D+T+ MKA T+QGS  ++   NG   M++ A VV+AD++A NGV+HVID+VI+P S
Sbjct:   48 ADLVDTLKSEGPFTVFAPTDAAFEALPEGTVETLLKPENKDQLIAILTYHVVPGKVMSSDLTDGMKAATVQGSEITIDLDNG--AMVDEASVVQADIEAENGVIHVIDKVIMPGS 160          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10443.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B6Y5P6_9BACT5.730e-7894.44Fasciclin n=2 Tax=unclassified Balneola TaxID=2615... [more]
UPI000CD86C3B1.850e-4968.00fasciclin domain-containing protein n=1 Tax=Gracil... [more]
A0A2D9FRC8_9BACT3.440e-4866.94Fasciclin n=1 Tax=Balneola sp. TaxID=2024824 RepID... [more]
UPI000372A87A1.170e-4664.52fasciclin domain-containing protein n=1 Tax=Gracil... [more]
UPI00037A22D31.490e-4666.39fasciclin domain-containing protein n=1 Tax=Balneo... [more]
A0A2D8CG39_9BACT7.270e-4562.40Fasciclin n=2 Tax=Balneolaceae TaxID=1813606 RepID... [more]
A0A521E1L3_9BACT2.610e-4461.60Uncaracterized surface protein containing fascicli... [more]
I5BWS5_9BACT6.090e-4262.50Beta-ig-h3/fasciclin n=1 Tax=Nitritalea halalkalip... [more]
A0A1B1A499_9RHOB1.120e-4159.65Nex18 symbiotically induced protein n=9 Tax=Rhodob... [more]
Q1GE58_RUEST3.210e-4162.61Beta-Ig-H3/fasciclin n=1 Tax=Ruegeria sp. (strain ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10443contigC-australica_Contig_10443:1..381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1121930.AQXG01000004_gene2970
PFAMsFasciclin
Model size381
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.91e-47
EggNOG OGsCOG2335@1|root,COG2335@2|Bacteria,4NMAH@976|Bacteroidetes
DescriptionSecreted and surface protein containing fasciclin-like repeats
Cds size381
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586780.9653041-CDS-C-australica_Contig_10443:0..3811682586780.9653041-CDS-C-australica_Contig_10443:0..381Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10443 1..381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10443.1.1prot_C-australica_Contig_10443.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10443 1..381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10443.1.1

>prot_C-australica_Contig_10443.1.1 ID=prot_C-australica_Contig_10443.1.1|Name=mRNA_C-australica_Contig_10443.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=127bp
ADLEATLQSEGPYTVFAPTNEAFENLPEGVLNELLKPENKEQLIAVLTYH
VIPGEVMSDDITETMKAKTIQGSNASVKSNGESVMIENAEVVKADMDASN
GVVHVIDEVILPPSIKKALNSSKSDY*
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mRNA from alignment at C-australica_Contig_10443:1..381+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10443.1.1 ID=mRNA_C-australica_Contig_10443.1.1|Name=mRNA_C-australica_Contig_10443.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=381bp|location=Sequence derived from alignment at C-australica_Contig_10443:1..381+ (Chrysoparadoxa australica CS_1217)
GCTGATTTAGAAGCAACACTTCAATCGGAAGGACCCTACACTGTTTTTGC ACCAACAAACGAAGCGTTTGAAAATCTTCCTGAGGGAGTTTTAAATGAGC TACTTAAGCCAGAAAACAAGGAACAGCTGATAGCTGTACTAACTTATCAT GTAATTCCCGGTGAAGTTATGTCGGATGACATTACTGAAACTATGAAAGC TAAAACAATTCAGGGAAGTAACGCATCAGTAAAAAGTAACGGAGAAAGCG TTATGATTGAAAATGCTGAAGTGGTAAAAGCAGATATGGATGCCAGTAAT GGTGTTGTGCATGTAATCGATGAAGTGATTCTGCCACCAAGTATCAAAAA AGCACTGAATTCTTCAAAGAGTGATTATTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_10443:1..381+

>mRNA_C-australica_Contig_10443.1.1 ID=mRNA_C-australica_Contig_10443.1.1|Name=mRNA_C-australica_Contig_10443.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=381bp|location=Sequence derived from alignment at C-australica_Contig_10443:1..381+ (Chrysoparadoxa australica CS_1217)
GCTGATTTAGAAGCAACACTTCAATCGGAAGGACCCTACACTGTTTTTGC
ACCAACAAACGAAGCGTTTGAAAATCTTCCTGAGGGAGTTTTAAATGAGC
TACTTAAGCCAGAAAACAAGGAACAGCTGATAGCTGTACTAACTTATCAT
GTAATTCCCGGTGAAGTTATGTCGGATGACATTACTGAAACTATGAAAGC
TAAAACAATTCAGGGAAGTAACGCATCAGTAAAAAGTAACGGAGAAAGCG
TTATGATTGAAAATGCTGAAGTGGTAAAAGCAGATATGGATGCCAGTAAT
GGTGTTGTGCATGTAATCGATGAAGTGATTCTGCCACCAAGTATCAAAAA
AGCACTGAATTCTTCAAAGAGTGATTATTAA
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