mRNA_C-australica_Contig_1044.4.2 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: D7FNH1_ECTSI (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH1_ECTSI) HSP 1 Score: 298 bits (764), Expect = 3.230e-97 Identity = 159/250 (63.60%), Postives = 196/250 (78.40%), Query Frame = 3
Query: 342 MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVHTDEKSTALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
MSSLRNAVKR HKER Q ASR+K GLLEKHKDYVLRAR+Y KKRDRM ALKLKAA++NPDEFYF M++ KT+ GVH + + L VVQLLKTQD+GYV S D +KA K++ SLHML EA NKHTIF +S ++A+EFD AKHFDTVPELADRAFNRPRK TLE Q+ GA+NR+ +K+ LK+++ +Y EL RL RA+++ A VHLEAQ+ VM SKGTKRK++ A+ PAV++WK++RSR
Sbjct: 1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHML--EAGPRNKHTIFFDSEKEAKEFDVAKHFDTVPELADRAFNRPRKDTLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 248
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: A0A836CK24_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK24_9STRA) HSP 1 Score: 295 bits (756), Expect = 5.230e-96 Identity = 156/250 (62.40%), Postives = 197/250 (78.80%), Query Frame = 3
Query: 342 MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVHTDEKSTALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
MSSLRNAVKRKTHKER Q ASR K+GLLEKH DYVLRARDYN KRDR+NAL+LKA+LRNPDEFYFGM+KAKTK+GVH E S++L+ +LKTQD+ Y+ MK +VD KKAE++KA LHML +A N HT+F+++ R R FDAA++FDT PELA R FNRPR ATLES+Q+LGA +R +K+ALKQ++ AY+E+ R RA ++ A HL AQ+ +MT++GT K+KGAE P V+KWKRQR++
Sbjct: 1 MSSLRNAVKRKTHKERAQPASRSKFGLLEKHSDYVLRARDYNAKRDRLNALRLKASLRNPDEFYFGMHKAKTKEGVHQVEGSSSLDHETAHMLKTQDMAYIHMKRAVDIKKAERLKAGLHML--DAPPQNTHTVFVKNKRQRRAFDAAEYFDTAPELAGRTFNRPRMATLESKQVLGAESRADLKKALKQRDAAYQEVEAREERARKMTRAAAHLAAQRALMTARGTVTKVKGAEKGQPPVYKWKRQRAK 248
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: A0A8K1CCZ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCZ2_PYTOL) HSP 1 Score: 247 bits (630), Expect = 5.480e-77 Identity = 132/250 (52.80%), Postives = 176/250 (70.40%), Query Frame = 3
Query: 348 SLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVHTDEK--STALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
SLRN VKR+ HKERGQ+ RKK GLLEKHKDYVLRARDYNKK+DR+ +KLKAA RNPDEFYF MN +T+DGVH E S L+ +++LKTQD+ Y+ MK +VD +KAEK+ LH + +A K NKHT+F++SS D FD A HFDT PELADRAFNR RK TL++ I +++K ++ K+++ YREL DRL RA ++ L+ ++ V +KG KRK++ + P V+KWK++R +
Sbjct: 2 SLRNVVKRREHKERGQLQERKKLGLLEKHKDYVLRARDYNKKQDRLRTMKLKAAFRNPDEFYFKMNTTRTEDGVHVSENNHSEKLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLTQGLHFI--DAPKNNKHTVFVDSSEDLNTFDVATHFDTAPELADRAFNRLRKETLKTTTIQATTDKKQLRALTKERDAVYRELNDRLIRATKIQQMSDRLDLERKVQ-AKGKKRKVQDGDSSRPPVYKWKKERQK 248
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: K3WAT9_GLOUD (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAT9_GLOUD) HSP 1 Score: 241 bits (616), Expect = 7.490e-75 Identity = 133/252 (52.78%), Postives = 174/252 (69.05%), Query Frame = 3
Query: 342 MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVH--TDEKSTALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
MSSLRN VKR+ HKERGQ+ RKK GLLEKHKDYV RARDYNKK+D + AL +KAA RNPDEFYF MN +T+DGVH T L+ +++LKTQD+ Y+ MK +VD +KAEK+ LH + A K NKH +F++S + FD AKHFDTVPE+ADRAFNR RK TL++ + ++K +K+ +++ YREL DRL RA + R L+ ++ V +KG K KIK AE PAV++WK+QR +
Sbjct: 1 MSSLRNVVKRREHKERGQLRERKKLGLLEKHKDYVKRARDYNKKQDHLKALAVKAAFRNPDEFYFRMNSTRTEDGVHVSTHNHHKQLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLNEGLHFIDA-AGKDNKHVVFVDSKDEVESFDVAKHFDTVPEIADRAFNRLRKDTLKTVSLPAVQDKKTLKKLGIERDAVYRELNDRLQRASTIDRMRAKLDLERKVQ-AKGKKMKIKDAEDGQPAVYRWKKQRQK 250
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: A0A5D6XJY8_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJY8_9STRA) HSP 1 Score: 231 bits (588), Expect = 1.220e-70 Identity = 129/250 (51.60%), Postives = 169/250 (67.60%), Query Frame = 3
Query: 348 SLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVHTDEKST----ALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQR 1085
SLRN VKR+ HKERGQ RKK GLLEKHKDYV RARDYN K+DR+ ++LKAA RNPDEFYF MN +T+ GVH + + AL +++LKTQDV Y+ +K +VD +KAEK+ A LH + +A ANKH +F++S +FD A HFDT PELADRAFNR R L++ + S+ K +K+ ++++ YREL DRL RA L R L+ ++ V +KG K KIK AE PAV++WK+QR
Sbjct: 2 SLRNVVKRREHKERGQPQERKKLGLLEKHKDYVKRARDYNSKQDRLRTMQLKAAFRNPDEFYFRMNATRTEGGVHVSDNNRLDGKALTADALKVLKTQDVAYLHLKRAVDMRKAEKLNAGLHFI--DAPTANKHVVFVDSEAQLAKFDVAAHFDTAPELADRAFNRVRMDALKTLALPAVSSAKEIKKRNRERDGVYRELSDRLERAATLDRMRAKLDLERKVQ-AKGKKMKIKDAENGQPAVYRWKKQR 248
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: G4YFD7_PHYSP (U3 small nucleolar RNA-associated protein 11 n=3 Tax=Phytophthora TaxID=4783 RepID=G4YFD7_PHYSP) HSP 1 Score: 227 bits (578), Expect = 3.860e-69 Identity = 129/253 (50.99%), Postives = 172/253 (67.98%), Query Frame = 3
Query: 342 MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVH--TDEKSTALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILG-ASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
MSSLRN VKR+ HKERGQ+ RKK GLLEKHKDYV RARDYN+K+ R+ L+LKAALRNPDEFY M A+T+ GVH T ++ ++ LKTQD+ Y+ MK +VD +KAEK+ LH + +A K NKHT+F+E R FD A+HFDT PEL DRAFNR R L+++Q+ A+N KH + ++ YRE+ DRL RA+++ L+ ++ V +KG KRK+K AE PAV++WK+QR +
Sbjct: 1 MSSLRNVVKRREHKERGQLRERKKLGLLEKHKDYVKRARDYNQKQKRLQTLQLKAALRNPDEFYQRMADARTEGGVHVSTHNHIKQVDSEALRTLKTQDLAYLHMKRAVDLRKAEKLNRGLHFV--DARKGNKHTVFVEDDRQLETFDVAQHFDTAPELVDRAFNRLRTKDLQTKQLPDLAANPKHKHKMQVEKNAKYREMRDRLARANKIGRMSAKLDLERKVQ-AKGRKRKVKAAENGMPAVYRWKQQRQK 250
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: A0A4D9DA46_9STRA (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA46_9STRA) HSP 1 Score: 226 bits (577), Expect = 5.630e-69 Identity = 132/251 (52.59%), Postives = 171/251 (68.13%), Query Frame = 3
Query: 345 SSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVHTDEKSTALNP-SVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQ-QILGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
+SLRNA+ RKT+KER Q A+RKK+GLLEKHKDYV RA DY +K + +L+ KAA RNPDEFYF M K +TK+GVH + A P + LLKTQD+ YV MK ++D KKAEK++A LH L EA ANKHT+F+++ + FD AKHF T P L RAFNRP+ TLE+ +LG +N +K+ K +E AY ELG+RL R+ H++ +K VM KG KRK++ AE PAVFKWKR+R +
Sbjct: 4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKSKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVTMKRALDVKKAEKLQAGLHFLTEEA--ANKHTVFVDTEAEVETFDPAKHFGTDPALVTRAFNRPKLETLETPGAVLGVANVGELKKVRKAREKAYTELGERLKRSLSFKEVLEHMQVEKNVM-GKGRKRKVQEAEDGKPAVFKWKRERRK 251
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: A0A2V0P5L3_9CHLO (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P5L3_9CHLO) HSP 1 Score: 224 bits (570), Expect = 6.330e-68 Identity = 128/252 (50.79%), Postives = 170/252 (67.46%), Query Frame = 3
Query: 342 MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVHTDEKSTA--LNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
+SSL NA+KRKTHKER Q A+R KYGLLEK KDY RARD+++K + AL+ KA RNPDEFYF M +A T+ GVH + A + + L++TQDVGY+R K + + KK E+MK +LH +G A +A+KH +FL+S +AR+FD A+ FDT EL RA+NRPR+A LES+ + A K +A +++ AY+EL R+ R LA LEA K VMT +G K+K+KGA PAVFKWKR+R R
Sbjct: 2 VSSLANAIKRKTHKERAQPAARSKYGLLEKKKDYRQRARDFHRKEKAIKALQRKAEERNPDEFYFSMERASTRGGVHVVPTAEANKYSQQELALMRTQDVGYLRSKATSEAKKIERMKETLHFIG--APRASKHKVFLDSKAEARDFDPAEFFDTPRELLGRAYNRPRRAQLESEAAVSAPEPKAAAKAERRKHAAYKELSQRVERQAALAKLAERLEAGKAVMTGRGRKKKVKGATADAPAVFKWKRERKR 251
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: A0A3R7K0P1_9STRA (U3 small nucleolar RNA-associated protein 11 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0P1_9STRA) HSP 1 Score: 223 bits (569), Expect = 1.680e-67 Identity = 127/254 (50.00%), Postives = 174/254 (68.50%), Query Frame = 3
Query: 342 MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVH--TDEKSTALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQI--LGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
MSSLRN VKR+ HKERGQ+ R+K GLLEKHKDYV RA+DYN+K+ + L+LKA++RNPDEFY+ M KT+ GVH T + LN ++ LKTQD+ Y+ MK +VD +KAEK+ LH + + K NKHT+F++ D +FD A+HFDT PELADRAFNR RKA LE+ ++ L A ++ K + +++ YREL DRL RA ++ L+ ++ V +KG K K+KGAE PAV++WK+QR +
Sbjct: 22 MSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVKRAKDYNQKQKHLRNLQLKASMRNPDEFYYKMIHGKTEGGVHISTHNHAKQLNAEALRTLKTQDLAYLHMKRAVDLRKAEKLNRGLHFI--DTPKNNKHTVFVDEDDDVNKFDVAEHFDTAPELADRAFNRLRKADLETMELPDLAADPKQKYKMQV-EKDAMYRELRDRLERAKKIGRMSAKLDLERKVQ-AKGKKMKVKGAEDGMPAVYRWKQQRQK 271
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: M4BX61_HYAAE (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BX61_HYAAE) HSP 1 Score: 222 bits (566), Expect = 2.860e-67 Identity = 130/253 (51.38%), Postives = 170/253 (67.19%), Query Frame = 3
Query: 342 MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVH--TDEKSTALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILG-ASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
MSSLRN VKR+ HKERGQ+ R+K GLLEKHKDYV RARDYN+K+ R+ AL+LKAALRNPDEF M +T+ GVH T L+ + LKTQD+ Y MK +VD +KAEK+ LH + +A K NKHT+F++ S FD A+HFDT PELADRAFNR RK LE+ ++ A +RKH + + + YREL DRL RA++L L+ ++ V +KG KRK++ AE PAV++WK+QR +
Sbjct: 1 MSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVQRARDYNQKQKRLTALRLKAALRNPDEFNRRMVSTRTESGVHVSTHNHLHQLDSEALHTLKTQDLAYCHMKRAVDLRKAEKLNHGLHFV--DAVKRNKHTVFVDDSEQVNTFDVAQHFDTAPELADRAFNRIRKRELETAELPDPAGDRKHKYKMQVEIDAKYRELRDRLARAEKLGLMSAKLDLERKVQ-AKGMKRKVRDAENGLPAVYRWKQQRQK 250 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1044.4.2 >prot_C-australica_Contig_1044.4.2 ID=prot_C-australica_Contig_1044.4.2|Name=mRNA_C-australica_Contig_1044.4.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=251bp MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNAback to top mRNA from alignment at C-australica_Contig_1044:13747..15837- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1044.4.2 ID=mRNA_C-australica_Contig_1044.4.2|Name=mRNA_C-australica_Contig_1044.4.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2091bp|location=Sequence derived from alignment at C-australica_Contig_1044:13747..15837- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1044:13747..15837- >mRNA_C-australica_Contig_1044.4.2 ID=mRNA_C-australica_Contig_1044.4.2|Name=mRNA_C-australica_Contig_1044.4.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=753bp|location=Sequence derived from alignment at C-australica_Contig_1044:13747..15837- (Chrysoparadoxa australica CS_1217)back to top |