mRNA_C-australica_Contig_1044.4.2 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1044.4.2
Unique NamemRNA_C-australica_Contig_1044.4.2
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: D7FNH1_ECTSI (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH1_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 3.230e-97
Identity = 159/250 (63.60%), Postives = 196/250 (78.40%), Query Frame = 3
Query:  342 MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVHTDEKSTALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
            MSSLRNAVKR  HKER Q ASR+K GLLEKHKDYVLRAR+Y KKRDRM ALKLKAA++NPDEFYF M++ KT+ GVH  + +  L   VVQLLKTQD+GYV    S D +KA K++ SLHML  EA   NKHTIF +S ++A+EFD AKHFDTVPELADRAFNRPRK TLE  Q+ GA+NR+ +K+ LK+++ +Y EL  RL RA+++  A VHLEAQ+ VM SKGTKRK++ A+   PAV++WK++RSR
Sbjct:    1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHML--EAGPRNKHTIFFDSEKEAKEFDVAKHFDTVPELADRAFNRPRKDTLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 248          
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: A0A836CK24_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK24_9STRA)

HSP 1 Score: 295 bits (756), Expect = 5.230e-96
Identity = 156/250 (62.40%), Postives = 197/250 (78.80%), Query Frame = 3
Query:  342 MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVHTDEKSTALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
            MSSLRNAVKRKTHKER Q ASR K+GLLEKH DYVLRARDYN KRDR+NAL+LKA+LRNPDEFYFGM+KAKTK+GVH  E S++L+     +LKTQD+ Y+ MK +VD KKAE++KA LHML  +A   N HT+F+++ R  R FDAA++FDT PELA R FNRPR ATLES+Q+LGA +R  +K+ALKQ++ AY+E+  R  RA ++  A  HL AQ+ +MT++GT  K+KGAE   P V+KWKRQR++
Sbjct:    1 MSSLRNAVKRKTHKERAQPASRSKFGLLEKHSDYVLRARDYNAKRDRLNALRLKASLRNPDEFYFGMHKAKTKEGVHQVEGSSSLDHETAHMLKTQDMAYIHMKRAVDIKKAERLKAGLHML--DAPPQNTHTVFVKNKRQRRAFDAAEYFDTAPELAGRTFNRPRMATLESKQVLGAESRADLKKALKQRDAAYQEVEAREERARKMTRAAAHLAAQRALMTARGTVTKVKGAEKGQPPVYKWKRQRAK 248          
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: A0A8K1CCZ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCZ2_PYTOL)

HSP 1 Score: 247 bits (630), Expect = 5.480e-77
Identity = 132/250 (52.80%), Postives = 176/250 (70.40%), Query Frame = 3
Query:  348 SLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVHTDEK--STALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
            SLRN VKR+ HKERGQ+  RKK GLLEKHKDYVLRARDYNKK+DR+  +KLKAA RNPDEFYF MN  +T+DGVH  E   S  L+   +++LKTQD+ Y+ MK +VD +KAEK+   LH +  +A K NKHT+F++SS D   FD A HFDT PELADRAFNR RK TL++  I   +++K ++   K+++  YREL DRL RA ++      L+ ++ V  +KG KRK++  +   P V+KWK++R +
Sbjct:    2 SLRNVVKRREHKERGQLQERKKLGLLEKHKDYVLRARDYNKKQDRLRTMKLKAAFRNPDEFYFKMNTTRTEDGVHVSENNHSEKLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLTQGLHFI--DAPKNNKHTVFVDSSEDLNTFDVATHFDTAPELADRAFNRLRKETLKTTTIQATTDKKQLRALTKERDAVYRELNDRLIRATKIQQMSDRLDLERKVQ-AKGKKRKVQDGDSSRPPVYKWKKERQK 248          
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: K3WAT9_GLOUD (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAT9_GLOUD)

HSP 1 Score: 241 bits (616), Expect = 7.490e-75
Identity = 133/252 (52.78%), Postives = 174/252 (69.05%), Query Frame = 3
Query:  342 MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVH--TDEKSTALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
            MSSLRN VKR+ HKERGQ+  RKK GLLEKHKDYV RARDYNKK+D + AL +KAA RNPDEFYF MN  +T+DGVH  T      L+   +++LKTQD+ Y+ MK +VD +KAEK+   LH +   A K NKH +F++S  +   FD AKHFDTVPE+ADRAFNR RK TL++  +    ++K +K+   +++  YREL DRL RA  +   R  L+ ++ V  +KG K KIK AE   PAV++WK+QR +
Sbjct:    1 MSSLRNVVKRREHKERGQLRERKKLGLLEKHKDYVKRARDYNKKQDHLKALAVKAAFRNPDEFYFRMNSTRTEDGVHVSTHNHHKQLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLNEGLHFIDA-AGKDNKHVVFVDSKDEVESFDVAKHFDTVPEIADRAFNRLRKDTLKTVSLPAVQDKKTLKKLGIERDAVYRELNDRLQRASTIDRMRAKLDLERKVQ-AKGKKMKIKDAEDGQPAVYRWKKQRQK 250          
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: A0A5D6XJY8_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJY8_9STRA)

HSP 1 Score: 231 bits (588), Expect = 1.220e-70
Identity = 129/250 (51.60%), Postives = 169/250 (67.60%), Query Frame = 3
Query:  348 SLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVHTDEKST----ALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQR 1085
            SLRN VKR+ HKERGQ   RKK GLLEKHKDYV RARDYN K+DR+  ++LKAA RNPDEFYF MN  +T+ GVH  + +     AL    +++LKTQDV Y+ +K +VD +KAEK+ A LH +  +A  ANKH +F++S     +FD A HFDT PELADRAFNR R   L++  +   S+ K +K+  ++++  YREL DRL RA  L   R  L+ ++ V  +KG K KIK AE   PAV++WK+QR
Sbjct:    2 SLRNVVKRREHKERGQPQERKKLGLLEKHKDYVKRARDYNSKQDRLRTMQLKAAFRNPDEFYFRMNATRTEGGVHVSDNNRLDGKALTADALKVLKTQDVAYLHLKRAVDMRKAEKLNAGLHFI--DAPTANKHVVFVDSEAQLAKFDVAAHFDTAPELADRAFNRVRMDALKTLALPAVSSAKEIKKRNRERDGVYRELSDRLERAATLDRMRAKLDLERKVQ-AKGKKMKIKDAENGQPAVYRWKKQR 248          
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: G4YFD7_PHYSP (U3 small nucleolar RNA-associated protein 11 n=3 Tax=Phytophthora TaxID=4783 RepID=G4YFD7_PHYSP)

HSP 1 Score: 227 bits (578), Expect = 3.860e-69
Identity = 129/253 (50.99%), Postives = 172/253 (67.98%), Query Frame = 3
Query:  342 MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVH--TDEKSTALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILG-ASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
            MSSLRN VKR+ HKERGQ+  RKK GLLEKHKDYV RARDYN+K+ R+  L+LKAALRNPDEFY  M  A+T+ GVH  T      ++   ++ LKTQD+ Y+ MK +VD +KAEK+   LH +  +A K NKHT+F+E  R    FD A+HFDT PEL DRAFNR R   L+++Q+   A+N KH  +   ++   YRE+ DRL RA+++      L+ ++ V  +KG KRK+K AE   PAV++WK+QR +
Sbjct:    1 MSSLRNVVKRREHKERGQLRERKKLGLLEKHKDYVKRARDYNQKQKRLQTLQLKAALRNPDEFYQRMADARTEGGVHVSTHNHIKQVDSEALRTLKTQDLAYLHMKRAVDLRKAEKLNRGLHFV--DARKGNKHTVFVEDDRQLETFDVAQHFDTAPELVDRAFNRLRTKDLQTKQLPDLAANPKHKHKMQVEKNAKYREMRDRLARANKIGRMSAKLDLERKVQ-AKGRKRKVKAAENGMPAVYRWKQQRQK 250          
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: A0A4D9DA46_9STRA (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA46_9STRA)

HSP 1 Score: 226 bits (577), Expect = 5.630e-69
Identity = 132/251 (52.59%), Postives = 171/251 (68.13%), Query Frame = 3
Query:  345 SSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVHTDEKSTALNP-SVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQ-QILGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
            +SLRNA+ RKT+KER Q A+RKK+GLLEKHKDYV RA DY +K   + +L+ KAA RNPDEFYF M K +TK+GVH    + A  P   + LLKTQD+ YV MK ++D KKAEK++A LH L  EA  ANKHT+F+++  +   FD AKHF T P L  RAFNRP+  TLE+   +LG +N   +K+  K +E AY ELG+RL R+        H++ +K VM  KG KRK++ AE   PAVFKWKR+R +
Sbjct:    4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKSKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVTMKRALDVKKAEKLQAGLHFLTEEA--ANKHTVFVDTEAEVETFDPAKHFGTDPALVTRAFNRPKLETLETPGAVLGVANVGELKKVRKAREKAYTELGERLKRSLSFKEVLEHMQVEKNVM-GKGRKRKVQEAEDGKPAVFKWKRERRK 251          
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: A0A2V0P5L3_9CHLO (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P5L3_9CHLO)

HSP 1 Score: 224 bits (570), Expect = 6.330e-68
Identity = 128/252 (50.79%), Postives = 170/252 (67.46%), Query Frame = 3
Query:  342 MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVHTDEKSTA--LNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
            +SSL NA+KRKTHKER Q A+R KYGLLEK KDY  RARD+++K   + AL+ KA  RNPDEFYF M +A T+ GVH    + A   +   + L++TQDVGY+R K + + KK E+MK +LH +G  A +A+KH +FL+S  +AR+FD A+ FDT  EL  RA+NRPR+A LES+  + A   K   +A +++  AY+EL  R+ R   LA     LEA K VMT +G K+K+KGA    PAVFKWKR+R R
Sbjct:    2 VSSLANAIKRKTHKERAQPAARSKYGLLEKKKDYRQRARDFHRKEKAIKALQRKAEERNPDEFYFSMERASTRGGVHVVPTAEANKYSQQELALMRTQDVGYLRSKATSEAKKIERMKETLHFIG--APRASKHKVFLDSKAEARDFDPAEFFDTPRELLGRAYNRPRRAQLESEAAVSAPEPKAAAKAERRKHAAYKELSQRVERQAALAKLAERLEAGKAVMTGRGRKKKVKGATADAPAVFKWKRERKR 251          
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: A0A3R7K0P1_9STRA (U3 small nucleolar RNA-associated protein 11 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0P1_9STRA)

HSP 1 Score: 223 bits (569), Expect = 1.680e-67
Identity = 127/254 (50.00%), Postives = 174/254 (68.50%), Query Frame = 3
Query:  342 MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVH--TDEKSTALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQI--LGASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
            MSSLRN VKR+ HKERGQ+  R+K GLLEKHKDYV RA+DYN+K+  +  L+LKA++RNPDEFY+ M   KT+ GVH  T   +  LN   ++ LKTQD+ Y+ MK +VD +KAEK+   LH +  +  K NKHT+F++   D  +FD A+HFDT PELADRAFNR RKA LE+ ++  L A  ++  K  + +++  YREL DRL RA ++      L+ ++ V  +KG K K+KGAE   PAV++WK+QR +
Sbjct:   22 MSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVKRAKDYNQKQKHLRNLQLKASMRNPDEFYYKMIHGKTEGGVHISTHNHAKQLNAEALRTLKTQDLAYLHMKRAVDLRKAEKLNRGLHFI--DTPKNNKHTVFVDEDDDVNKFDVAEHFDTAPELADRAFNRLRKADLETMELPDLAADPKQKYKMQV-EKDAMYRELRDRLERAKKIGRMSAKLDLERKVQ-AKGKKMKVKGAEDGMPAVYRWKQQRQK 271          
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Match: M4BX61_HYAAE (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BX61_HYAAE)

HSP 1 Score: 222 bits (566), Expect = 2.860e-67
Identity = 130/253 (51.38%), Postives = 170/253 (67.19%), Query Frame = 3
Query:  342 MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNALKLKAALRNPDEFYFGMNKAKTKDGVH--TDEKSTALNPSVVQLLKTQDVGYVRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKHFDTVPELADRAFNRPRKATLESQQILG-ASNRKHMKRALKQQETAYRELGDRLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR 1091
            MSSLRN VKR+ HKERGQ+  R+K GLLEKHKDYV RARDYN+K+ R+ AL+LKAALRNPDEF   M   +T+ GVH  T      L+   +  LKTQD+ Y  MK +VD +KAEK+   LH +  +A K NKHT+F++ S     FD A+HFDT PELADRAFNR RK  LE+ ++   A +RKH  +   + +  YREL DRL RA++L      L+ ++ V  +KG KRK++ AE   PAV++WK+QR +
Sbjct:    1 MSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVQRARDYNQKQKRLTALRLKAALRNPDEFNRRMVSTRTESGVHVSTHNHLHQLDSEALHTLKTQDLAYCHMKRAVDLRKAEKLNHGLHFV--DAVKRNKHTVFVDDSEQVNTFDVAQHFDTAPELADRAFNRIRKRELETAELPDPAGDRKHKYKMQVEIDAKYRELRDRLARAEKLGLMSAKLDLERKVQ-AKGMKRKVRDAENGLPAVYRWKQQRQK 250          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1044.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNH1_ECTSI3.230e-9763.60U3 small nucleolar RNA-associated protein 11 n=2 T... [more]
A0A836CK24_9STRA5.230e-9662.40U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A8K1CCZ2_PYTOL5.480e-7752.80Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WAT9_GLOUD7.490e-7552.78U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A5D6XJY8_9STRA1.220e-7051.60U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
G4YFD7_PHYSP3.860e-6950.99U3 small nucleolar RNA-associated protein 11 n=3 T... [more]
A0A4D9DA46_9STRA5.630e-6952.59U3 small nucleolar RNA-associated protein 11 n=2 T... [more]
A0A2V0P5L3_9CHLO6.330e-6850.79U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A3R7K0P1_9STRA1.680e-6750.00U3 small nucleolar RNA-associated protein 11 n=4 T... [more]
M4BX61_HYAAE2.860e-6751.38U3 small nucleolar RNA-associated protein 11 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1044contigC-australica_Contig_1044:13747..15837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNH1
Preferred nameUTP11L
PFAMsUtp11
Model size1154
Max annot lvl2759|Eukaryota
KEGG koko:K14685,ko:K14769
KEGG TC2.A.100.1
KEGG Pathwayko04216,ko04978,map04216,map04978
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0010942,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons7
Evalue4.48e-100
EggNOG OGsCOG5223@1|root,KOG3237@2759|Eukaryota
Ec32 ortholog descriptionSmall-subunit processome, Utp11
Ec32 orthologEc-01_005480.1
DescriptionrRNA processing
Cds size753
COG categoryL
BRITEko00000,ko00001,ko02000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1044.4.2prot_C-australica_Contig_1044.4.2Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1044 13807..15408 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586780.862888-UTR-C-australica_Contig_1044:13746..138061682586780.862888-UTR-C-australica_Contig_1044:13746..13806Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1044 13747..13806 -
1682586780.9277558-UTR-C-australica_Contig_1044:15408..154581682586780.9277558-UTR-C-australica_Contig_1044:15408..15458Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1044 15409..15458 -
1682586780.9361403-UTR-C-australica_Contig_1044:15546..158371682586780.9361403-UTR-C-australica_Contig_1044:15546..15837Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1044 15547..15837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586780.8728147-CDS-C-australica_Contig_1044:13806..138691682586780.8728147-CDS-C-australica_Contig_1044:13806..13869Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1044 13807..13869 -
1682586780.880689-CDS-C-australica_Contig_1044:14084..142521682586780.880689-CDS-C-australica_Contig_1044:14084..14252Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1044 14085..14252 -
1682586780.8910108-CDS-C-australica_Contig_1044:14541..148001682586780.8910108-CDS-C-australica_Contig_1044:14541..14800Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1044 14542..14800 -
1682586780.9043145-CDS-C-australica_Contig_1044:14920..150431682586780.9043145-CDS-C-australica_Contig_1044:14920..15043Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1044 14921..15043 -
1682586780.9122481-CDS-C-australica_Contig_1044:15126..151951682586780.9122481-CDS-C-australica_Contig_1044:15126..15195Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1044 15127..15195 -
1682586780.919979-CDS-C-australica_Contig_1044:15337..154081682586780.919979-CDS-C-australica_Contig_1044:15337..15408Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1044 15338..15408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1044.4.2

>prot_C-australica_Contig_1044.4.2 ID=prot_C-australica_Contig_1044.4.2|Name=mRNA_C-australica_Contig_1044.4.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=251bp
MSSLRNAVKRKTHKERGQVASRKKYGLLEKHKDYVLRARDYNKKRDRMNA
LKLKAALRNPDEFYFGMNKAKTKDGVHTDEKSTALNPSVVQLLKTQDVGY
VRMKESVDRKKAEKMKASLHMLGGEASKANKHTIFLESSRDAREFDAAKH
FDTVPELADRAFNRPRKATLESQQILGASNRKHMKRALKQQETAYRELGD
RLTRADELASARVHLEAQKTVMTSKGTKRKIKGAEGKNPAVFKWKRQRSR
*
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mRNA from alignment at C-australica_Contig_1044:13747..15837-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1044.4.2 ID=mRNA_C-australica_Contig_1044.4.2|Name=mRNA_C-australica_Contig_1044.4.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2091bp|location=Sequence derived from alignment at C-australica_Contig_1044:13747..15837- (Chrysoparadoxa australica CS_1217)
TCCCGCCTCCATGGGTTTTACATATCTGCTTGCCGCCTCCCGAGAGAGCA CCATTCTTGCATCCTACTCCCCCATCCACCTCCTTCCTTCATGAGCTGAG CACATCTGCTTGTCACCTCAGTCTACTGGACGTTTGCTGTCTGTCTGTCT GTCTCCTCTGGTCTGCTTGCTTTGCGTAGGAGCCTCCCTGGTCAAGTCTC AAGTCTCAAGCGCTTAAATTTGAGTTCCCAAGTCAAGTCTCAAGCGCTTA GCCTCCTACGCGAATCCTTTTGGTTTTCCCCATAGCTACAGGTAATTAAC TACACACCCCTACACCAAACCACACGCAGTCTGCCCCCCTTTTCCCAGCG CTCCTGACTGTCTCCTCGCCGATTTTCAGGGAAGGGACTATTGTAGTTAG GTCACGTCTGCCTCCCTGCTTGAAGCGAGATGTCTTCTCTTCGCAATGCT GTGAAGAGGAAGACACACAAAGAGAGAGGACAAGTCGCCTCGCGGAAGAA GTCAGTAGCCTTAACTACCCTCATTGCATGTCATGGCCTAAAATATTTCC AGCCTTGCCCCCACCCTGCGCCTAAACTTGTTCCAGCACTCCACCCCCTG GCAAAGCCCTTGACAGTCAGTACAACCACGCCCTGCGGACAGGTATGGAC TACTCGAGAAACACAAAGATTATGTACTGCGGGCCAGGGACTACAACAAG AAGAGAGACAGGTGAATAAAACCGCCCTTTGGGTTAGCCTTTGAGACGAC AGGTCCCCAACCTCCCTGCCTGCCTGATCTTTCCTTCCCTCCAGGATGAA CGCGCTCAAGCTCAAGGCGGCCCTGAGAAACCCTGATGAGTTCTACTTCG GCATGAACAAGGCCAAAACCAAGGACGGCGTCCACACAGATGAGAAATCA ACGGCCTTGAACCCAAGGTATCGATCGTTTACTCAGGAGGAGAGCTACTC AGCCCCGTTCTTGATGTGAAAGCGCTCCCTACGTTTGTTGTTTCTGCTTC TTGCATCTCATGGGAATCTCCCGCTCGTCCCACCCAGCGTCGTCCAGCTG CTGAAGACCCAGGACGTGGGGTACGTCCGAATGAAGGAGAGCGTGGACCG CAAGAAGGCGGAGAAGATGAAGGCCAGCCTGCACATGCTAGGCGGGGAGG CCAGCAAGGCCAACAAGCACACCATCTTCCTGGAGAGCAGCAGGGATGCG CGAGAGTTTGATGCGGCCAAGCACTTTGACACGGTTCCAGAGCTGGCCGA CCGCGCGTTTAATCGGCCGCGGAAGGCAACGCTGGAGTCACAGCAGGTTG ATTTGGTTAGAGAATAGGCTCCTTCACTAGGCTTGACATAAGCTTGTTTT GACTGGCGGCTGGCTAGTTGATTGAACCACTGGCGTTGATGAGGCGAGCT CGTTGGGTTGCGCAGACGCCTTGCGTGCACGGAGCACCAAAGCGAGCCAA GAGTCAGGCAGACCACGCAAAGCTGCTAGAAGCTCATTCTCGTCAGCCTG TGGGCACTTGACTTTGCTGAGTTGTCCAGCCCCAAAACTGACCGAAAAGC CTCGGCTGACCTGCCACTCTCGTCCCTGTTATCAGATACTGGGGGCAAGC AATAGGAAGCACATGAAGCGGGCGCTGAAGCAGCAGGAGACCGCATATAG AGAGCTGGGGGACAGATTGACGCGGGCTGATGAGCTGGCGTCGGCGCGGG TGCACCTGGAGGCGCAGAAGACGGTCATGACATCAAAGGGGACCAAGAGA AAGGTGGGTGCATTGTGGTCCCTGGGTGACTCGTGTAGTGCCCATGCAGA AGGAGAAGGCTAGAAAGCCCAAGTCAATGGCTGGGAGTAAGTTTTAGGTG CTTGAGGTCTACGAGTTGTAGATAAGCCGCTAGGGTGTCATGGGTCCTAT GTGTTTTAACTTGGACCCTAGTCCTAATCCCCTGTTCTGCTAACCCCGTC GCCAACACTGGATGGCAGATCAAAGGCGCTGAAGGGAAGAACCCTGCGGT GTTCAAATGGAAGAGGCAGAGGAGCCGGTAGATGCTTTGCTTGCCCTCAT CTAACTTATAGCAACAAGTACTGCATTGCACAGAATAGGCC
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Coding sequence (CDS) from alignment at C-australica_Contig_1044:13747..15837-

>mRNA_C-australica_Contig_1044.4.2 ID=mRNA_C-australica_Contig_1044.4.2|Name=mRNA_C-australica_Contig_1044.4.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=753bp|location=Sequence derived from alignment at C-australica_Contig_1044:13747..15837- (Chrysoparadoxa australica CS_1217)
ATGTCTTCTCTTCGCAATGCTGTGAAGAGGAAGACACACAAAGAGAGAGG
ACAAGTCGCCTCGCGGAAGAAGTATGGACTACTCGAGAAACACAAAGATT
ATGTACTGCGGGCCAGGGACTACAACAAGAAGAGAGACAGGATGAACGCG
CTCAAGCTCAAGGCGGCCCTGAGAAACCCTGATGAGTTCTACTTCGGCAT
GAACAAGGCCAAAACCAAGGACGGCGTCCACACAGATGAGAAATCAACGG
CCTTGAACCCAAGCGTCGTCCAGCTGCTGAAGACCCAGGACGTGGGGTAC
GTCCGAATGAAGGAGAGCGTGGACCGCAAGAAGGCGGAGAAGATGAAGGC
CAGCCTGCACATGCTAGGCGGGGAGGCCAGCAAGGCCAACAAGCACACCA
TCTTCCTGGAGAGCAGCAGGGATGCGCGAGAGTTTGATGCGGCCAAGCAC
TTTGACACGGTTCCAGAGCTGGCCGACCGCGCGTTTAATCGGCCGCGGAA
GGCAACGCTGGAGTCACAGCAGATACTGGGGGCAAGCAATAGGAAGCACA
TGAAGCGGGCGCTGAAGCAGCAGGAGACCGCATATAGAGAGCTGGGGGAC
AGATTGACGCGGGCTGATGAGCTGGCGTCGGCGCGGGTGCACCTGGAGGC
GCAGAAGACGGTCATGACATCAAAGGGGACCAAGAGAAAGATCAAAGGCG
CTGAAGGGAAGAACCCTGCGGTGTTCAAATGGAAGAGGCAGAGGAGCCGG
TAG
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