mRNA_C-australica_Contig_10432.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10432.1.1
Unique NamemRNA_C-australica_Contig_10432.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10432.1.1 vs. uniprot
Match: A0A2E6H0G9_9PROT (Uncharacterized protein n=1 Tax=Halobacteriovorax sp. TaxID=2020862 RepID=A0A2E6H0G9_9PROT)

HSP 1 Score: 291 bits (745), Expect = 1.400e-94
Identity = 148/272 (54.41%), Postives = 190/272 (69.85%), Query Frame = 1
Query:    1 IHEYVNLFGMAPQYVAANKAPALSKVIGYLKNITKKIEAYKAVPTSDEHVLELMPLRIQDDKIIAIKEKNPRTIVFDKNAQLKNTFEGAKITSNGQKGQPAEIFFPKKKDGERSGTQYALAKTVYEKVGLDSTWRKNFLPGPYLSSYGRLNDEVLTLTKNGASEIMEFKLGNAKYAERSEKRRRKMFTNPASANLVGKYNSIEAEDGMFILSPMETTTQATDKVVVPRIGLFIDIFDATKALNQDVVELVFINPENPEDFLMYYEHPDNGEG 816
            +HEYVNL  M P+YVAA KAP L+K+IGYLK IT K+E  K VPT  E    +  +R+  + +  +    PR +V     +L++  EGA ITSNG KGQP EIFFP  +D + +G QY LA   Y+   LDSTWRK+FLPGPYLS+YGRLND VL L+  G  ++  F + N +  ++S  RR+KMFTN  SA L G Y  IE  +GMF+L  + ++ + T+KV+  RIGLF+DIFDATKALNQDVVEL+F++P NP+DFLMYYEHPDNGEG
Sbjct:   72 VHEYVNLLNMFPEYVAAAKAPGLNKLIGYLKKITAKLEVMKVVPTGTEGTFNMYEVRVDGESLTHVPTDKPRQLVLSDKQELEHPLEGAIITSNGGKGQPKEIFFPADRDKKYNGLQYTLANFTYKAFKLDSTWRKSFLPGPYLSAYGRLNDTVLELSLEGGKQMTNFII-NPEMKDKSSWRRKKMFTNKKSAFLEGDYEMIEPAEGMFLLREI-SSNKKTNKVLEGRIGLFVDIFDATKALNQDVVELIFVDPANPKDFLMYYEHPDNGEG 341          
BLAST of mRNA_C-australica_Contig_10432.1.1 vs. uniprot
Match: A0A2E3XPY3_9PROT (Uncharacterized protein n=1 Tax=Halobacteriovoraceae bacterium TaxID=2026745 RepID=A0A2E3XPY3_9PROT)

HSP 1 Score: 281 bits (718), Expect = 1.460e-90
Identity = 151/271 (55.72%), Postives = 182/271 (67.16%), Query Frame = 1
Query:    7 EYVNLFGMAPQYVAANKAPALSKVIGYLKNITKKIEAYKAVP-TSDEHVLELMPLRIQDDKIIAIKEKNPRTIVFDKNAQLKNTFEGAKITSNGQKGQPAEIFFPKKKDGERSGTQYALAKTVYEKVGLDSTWRKNFLPGPYLSSYGRLNDEVLTLTKNGASEIMEFKLGNAKYAERSEKRRRKMFTNPASANLVGKYNSIEAEDGMFILSPMETTTQATDKVVVPRIGLFIDIFDATKALNQDVVELVFINPENPEDFLMYYEHPDNGEG 816
            EYVNL  MAPQY+AANK P  S VIGYLKNIT+KI  +KAVP    E V  L  L I  ++I     + PR ++  K+A   +  EGA ITSNG+K QP EIFFP K D + +G QY  A  VY+KVGLDSTWRK++LPGPY S+YGR +D VL +T  G  +   F     K    SE++RR MFTNP SA L G ++ +E  DGMF+   + +  +  D+V   RIGLFIDIFDATKALNQDVVE   INPE+PEDFLMYYE PDNGEG
Sbjct:   77 EYVNLLRMAPQYIAANKLPIASNVIGYLKNITRKIATFKAVPHVEKEGVYNLYELHIVGERIEPKIVEKPRQLILSKSANENSPLEGAIITSNGKKNQPKEIFFPAKNDKKDNGVQYHTANFVYKKVGLDSTWRKDYLPGPYFSAYGRKDDVVLKMTTQGTQDQASFIDDPEKATSMSERKRRAMFTNPKSAFLKGDFDVVEPLDGMFLFKSVASDKKTNDEVT-QRIGLFIDIFDATKALNQDVVEFTLINPEDPEDFLMYYEDPDNGEG 346          
BLAST of mRNA_C-australica_Contig_10432.1.1 vs. uniprot
Match: A0A849THP7_9PROT (Uncharacterized protein n=1 Tax=Bacteriovoracaceae bacterium TaxID=2081706 RepID=A0A849THP7_9PROT)

HSP 1 Score: 254 bits (648), Expect = 4.550e-80
Identity = 134/270 (49.63%), Postives = 183/270 (67.78%), Query Frame = 1
Query:    7 EYVNLFGMAPQYVAANKAPALSKVIGYLKNITKKIEAYKAVPTSDEHVLELMPLRIQDDKIIAIKEKNPRTIVFDKNAQLKNTFEGAKITSNGQKGQPAEIFFPKKKDGERSGTQYALAKTVYEKVGLDSTWRKNFLPGPYLSSYGRLNDEVLTLTKNGASEIMEFKLGNAKYAERSEKRRRKMFTNPASANLVGKYNSIEAEDGMFILSPMETTTQATDKVVVPRIGLFIDIFDATKALNQDVVELVFINPENPEDFLMYYEHPDNGEG 816
            EYV+L  MAP Y+ +NK PA++K +G+L +IT KI AYKA P+++E   EL PL    +KII  KE  PR +   K+  + +   GA I+S  + G+P EIFFPK+ D +R+G QY +AK  Y K  L+STWRKN+LPGPYLS Y +++D VL L  +G +   EFKL N   +  S+++R ++FT+  SA L G+++  E  DGMF+ S +    +  D +V  +IGLFID+FDATK+LNQDVVEL  I+ E P +FLMYYEHPDNGEG
Sbjct:   74 EYVDLIKMAPSYIISNKMPAVAKKVGFLNSITSKITAYKATPSANEGTFELWPLVASGEKIIEKKEGKPRLLTLAKDETVGDALAGATISSVNE-GEPIEIFFPKEDDEKRNGVQYGVAKLTYSKAKLESTWRKNYLPGPYLSQYAKVDDVVLDLAGSGDNLRAEFKL-NESASNVSKEKRERVFTHKDSAFLKGEFSVTEPLDGMFLFSSVNADAKTRD-IVQGKIGLFIDVFDATKSLNQDVVELALIDSEKPGEFLMYYEHPDNGEG 340          
BLAST of mRNA_C-australica_Contig_10432.1.1 vs. uniprot
Match: A0A2D5YNS5_9PROT (Uncharacterized protein n=1 Tax=Halobacteriovorax sp. TaxID=2020862 RepID=A0A2D5YNS5_9PROT)

HSP 1 Score: 199 bits (506), Expect = 2.140e-58
Identity = 114/272 (41.91%), Postives = 165/272 (60.66%), Query Frame = 1
Query:    1 IHEYVNLFGMAPQYVAANKAPALSKVIGYLKNITKKIEAYKAVPTSDEHVLELMPLRIQDDKIIAIKEKNPRTIVFDKNAQLKNTFEGAKITSNGQKGQPAEIFFPKKKDGERSGTQYALAKTVYEKVGLDSTWRKNFLPGPYLSSYGRLNDEVLTLTKNGASEIMEFKLGNAKYAERSEKRRRKMFTNPASANLVGKYNSIEAEDGMFILSPMETTTQATDKVVVPRIGLFIDIFDATKALNQDVVELVFINPENPEDFLMYYEHPDNGEG 816
            I EYV+L  MAP+Y+ +NK+  +S  IGYL  I  +I AY+A PT++E   E+  L  ++  +    +  P  ++  ++    N   GAKIT+  + G+P EI FPK +D +  G Q++LA   Y KV L+STWR  +LPGPYL +Y    D +L L K   +   +F + N   +  S+K+R K  TN  SA + G++ + + EDG+F+    +   +  D  V  ++GLFIDIFDAT+AL QDVVELV ++   P DFLMYYEHP+NGEG
Sbjct:   95 ILEYVDLVKMAPKYIFSNKSSLISDKIGYLNQINSRITAYRANPTAEEGKFEMQKLHYRNGVLEEDNKPEPSMLILGEDKA--NPIAGAKITA-AKDGEPVEIQFPKDEDHDL-GKQHSLAAFTYNKVKLNSTWRSEYLPGPYLGAYYDKKDIILDLKKKDGNMTAKFMI-NKDRSHLSKKKREKQLTNAKSAYIEGEFIAKKVEDGIFVFEAKDNNVRNKD-YVEGKLGLFIDIFDATEALGQDVVELVIVDSNAPTDFLMYYEHPENGEG 360          
BLAST of mRNA_C-australica_Contig_10432.1.1 vs. uniprot
Match: A0A1Y5FBP9_9PROT (Uncharacterized protein n=1 Tax=Halobacteriovorax marinus TaxID=97084 RepID=A0A1Y5FBP9_9PROT)

HSP 1 Score: 192 bits (489), Expect = 1.060e-55
Identity = 109/284 (38.38%), Postives = 154/284 (54.23%), Query Frame = 1
Query:    7 EYVNLFGMAPQYVAANKAPALSKVIGYLKNITKKIEAYKAVPTSDEHVLELMPLRIQDDKIIAIKEKNPRTIVFDKNAQLKNTFEGAKITS--NGQKGQPAEIFFP------------KKKDGERSGTQYALAKTVYEKVGLDSTWRKNFLPGPYLSSYGRLNDEVLTLTKNGASEIMEFKLGNAKYAERSEKRRRKMFTNPASANLVGKYNSIEAEDGMFILSPMETTTQATDKVVVPRIGLFIDIFDATKALNQDVVELVFINPENPEDFLMYYEHPDNGEG 816
            EY NL  MAP YV +NK P +  + G+LK I   +  YK  P ++    E+  L  +  +++A +   P  +       L +   GA+I++    +KG   ++FFP            K+K   + G Q+ LA  VY+KV L+STWR NFLPGPYL +Y     +VLTL  +      +F L          + RR  FTN  SA++ G +   +   G+FI S  +   +  + V   RIG+FIDIFDA K+L+QDVVEL+ ++  NP DFLMYYEHPDNGEG
Sbjct:   95 EYTNLLRMAPTYVGSNKLPPIQSIFGFLKKIATSVTVYKVTPLAEAGKYEMQLLNARGGQLVATQSATPMVLHLSDAENLSHPLSGARISNFAKSKKGNEVDVFFPEIPQTETKEEEKKRKKEAKFGMQFNLANFVYKKVKLESTWRDNFLPGPYLRAYNDKKHQVLTLKADAGKLEADFVLEKGWRIWSGLRARR--FTNKKSASIKGNFEVTKVAKGIFIFSSTDDKNEGVEHVE-DRIGVFIDIFDARKSLDQDVVELIMVDSNNPTDFLMYYEHPDNGEG 375          
BLAST of mRNA_C-australica_Contig_10432.1.1 vs. uniprot
Match: UPI001B06759D (Uncharacterized protein n=1 Tax=Bdellovibrio sp. TaxID=28201 RepID=UPI001B06759D)

HSP 1 Score: 79.0 bits (193), Expect = 9.000e-14
Identity = 59/157 (37.58%), Postives = 80/157 (50.96%), Query Frame = 1
Query:    7 EYVNLFGMAPQYVAANKAPALSKVIGYLKNITKKIEAYKAVPTSDEHVLELMPLRIQDDKIIAIKEKNPRTIVFDKNAQLKNTFEGAKITS--NGQKGQPAEIFFPKKKDGERSGT------QYALAKTVYEKVGLDSTWRKNF--LPGPYLSSYGR 447
            EY  L  M   Y+A+ KAP L+ V+GYL  I  +I AYK VP +     E+  L +Q  +I+A ++K   T+V      +     GA IT   +GQ   P ++    K D   S T      Q  LA+ VY+K  L S+WR N+  L G YLS YGR
Sbjct:   86 EYDQLLNMGLPYLASQKAPFLNHVVGYLDKIATRISAYKFVPGAQPGTYEMHNLIVQSGQIVA-QDKFAMTLVISSKPGISAPLAGAVITGFKDGQISFP-DVLASNKSDVVSSITEVLNFSQLDLARVVYKKGHLASSWRGNWKDLEGSYLSEYGR 240          
BLAST of mRNA_C-australica_Contig_10432.1.1 vs. uniprot
Match: UPI001B25AB43 (Uncharacterized protein n=1 Tax=Bdellovibrio sp. TaxID=28201 RepID=UPI001B25AB43)

HSP 1 Score: 58.2 bits (139), Expect = 1.130e-7
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  622 MFILSPMETTTQ-ATDKVVVPRIGLFIDIFDAT--KALNQDVVELVFINPENPEDFLMYYEHP 801
            M++L P    T+ A+D  +  RIGLF+D+FD +  +A    V EL + NP +PEDF+MYYEHP
Sbjct:    3 MYVLVPATNRTRTASDIEMTGRIGLFLDVFDGSSPEAGRHLVTELAYTNPYDPEDFMMYYEHP 65          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10432.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2E6H0G9_9PROT1.400e-9454.41Uncharacterized protein n=1 Tax=Halobacteriovorax ... [more]
A0A2E3XPY3_9PROT1.460e-9055.72Uncharacterized protein n=1 Tax=Halobacteriovorace... [more]
A0A849THP7_9PROT4.550e-8049.63Uncharacterized protein n=1 Tax=Bacteriovoracaceae... [more]
A0A2D5YNS5_9PROT2.140e-5841.91Uncharacterized protein n=1 Tax=Halobacteriovorax ... [more]
A0A1Y5FBP9_9PROT1.060e-5538.38Uncharacterized protein n=1 Tax=Halobacteriovorax ... [more]
UPI001B06759D9.000e-1437.58Uncharacterized protein n=1 Tax=Bdellovibrio sp. T... [more]
UPI001B25AB431.130e-747.62Uncharacterized protein n=1 Tax=Bdellovibrio sp. T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10432contigC-australica_Contig_10432:2..817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size816
Hectar predicted targeting categoryother localisation
Exons1
Cds size789
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586780.4972234-UTR-C-australica_Contig_10432:1..281682586780.4972234-UTR-C-australica_Contig_10432:1..28Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10432 2..28 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586780.5073216-CDS-C-australica_Contig_10432:28..8171682586780.5073216-CDS-C-australica_Contig_10432:28..817Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10432 29..817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10432.1.1prot_C-australica_Contig_10432.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10432 29..817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10432.1.1

>prot_C-australica_Contig_10432.1.1 ID=prot_C-australica_Contig_10432.1.1|Name=mRNA_C-australica_Contig_10432.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=263bp
MAPQYVAANKAPALSKVIGYLKNITKKIEAYKAVPTSDEHVLELMPLRIQ
DDKIIAIKEKNPRTIVFDKNAQLKNTFEGAKITSNGQKGQPAEIFFPKKK
DGERSGTQYALAKTVYEKVGLDSTWRKNFLPGPYLSSYGRLNDEVLTLTK
NGASEIMEFKLGNAKYAERSEKRRRKMFTNPASANLVGKYNSIEAEDGMF
ILSPMETTTQATDKVVVPRIGLFIDIFDATKALNQDVVELVFINPENPED
FLMYYEHPDNGEG
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mRNA from alignment at C-australica_Contig_10432:2..817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10432.1.1 ID=mRNA_C-australica_Contig_10432.1.1|Name=mRNA_C-australica_Contig_10432.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=816bp|location=Sequence derived from alignment at C-australica_Contig_10432:2..817+ (Chrysoparadoxa australica CS_1217)
ATTCATGAATATGTAAATCTATTTGGAATGGCACCTCAATACGTAGCTGC TAACAAAGCACCGGCATTGAGTAAAGTTATTGGTTACCTAAAGAACATCA CAAAGAAAATTGAAGCTTATAAAGCGGTGCCAACTTCTGATGAGCATGTT CTTGAGCTTATGCCTCTAAGAATTCAAGATGATAAAATCATCGCAATTAA AGAAAAGAATCCAAGAACAATTGTTTTTGATAAGAATGCACAACTTAAAA ATACTTTCGAAGGTGCAAAAATCACTAGTAATGGTCAAAAGGGTCAACCA GCTGAAATTTTCTTTCCTAAGAAAAAGGATGGTGAGAGAAGTGGTACTCA GTATGCTCTAGCAAAAACTGTTTATGAAAAAGTTGGTCTTGATTCAACAT GGAGAAAGAACTTTCTTCCAGGACCATACCTTTCTTCATATGGACGTCTT AACGATGAGGTTCTTACTTTAACTAAGAATGGAGCTTCAGAAATTATGGA GTTCAAACTTGGAAACGCAAAATATGCGGAAAGAAGTGAAAAAAGAAGAA GAAAGATGTTTACTAACCCAGCTTCTGCTAACCTAGTAGGGAAATATAAC TCTATTGAAGCGGAAGACGGAATGTTCATCCTAAGTCCAATGGAAACGAC GACTCAGGCAACTGACAAAGTTGTTGTTCCAAGAATTGGTCTTTTCATCG ATATCTTTGATGCAACTAAAGCATTAAATCAAGATGTAGTAGAACTGGTT TTCATTAACCCTGAAAACCCTGAAGACTTCCTTATGTACTATGAGCACCC AGATAATGGTGAAGGT
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Coding sequence (CDS) from alignment at C-australica_Contig_10432:2..817+

>mRNA_C-australica_Contig_10432.1.1 ID=mRNA_C-australica_Contig_10432.1.1|Name=mRNA_C-australica_Contig_10432.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=789bp|location=Sequence derived from alignment at C-australica_Contig_10432:2..817+ (Chrysoparadoxa australica CS_1217)
ATGGCACCTCAATACGTAGCTGCTAACAAAGCACCGGCATTGAGTAAAGT
TATTGGTTACCTAAAGAACATCACAAAGAAAATTGAAGCTTATAAAGCGG
TGCCAACTTCTGATGAGCATGTTCTTGAGCTTATGCCTCTAAGAATTCAA
GATGATAAAATCATCGCAATTAAAGAAAAGAATCCAAGAACAATTGTTTT
TGATAAGAATGCACAACTTAAAAATACTTTCGAAGGTGCAAAAATCACTA
GTAATGGTCAAAAGGGTCAACCAGCTGAAATTTTCTTTCCTAAGAAAAAG
GATGGTGAGAGAAGTGGTACTCAGTATGCTCTAGCAAAAACTGTTTATGA
AAAAGTTGGTCTTGATTCAACATGGAGAAAGAACTTTCTTCCAGGACCAT
ACCTTTCTTCATATGGACGTCTTAACGATGAGGTTCTTACTTTAACTAAG
AATGGAGCTTCAGAAATTATGGAGTTCAAACTTGGAAACGCAAAATATGC
GGAAAGAAGTGAAAAAAGAAGAAGAAAGATGTTTACTAACCCAGCTTCTG
CTAACCTAGTAGGGAAATATAACTCTATTGAAGCGGAAGACGGAATGTTC
ATCCTAAGTCCAATGGAAACGACGACTCAGGCAACTGACAAAGTTGTTGT
TCCAAGAATTGGTCTTTTCATCGATATCTTTGATGCAACTAAAGCATTAA
ATCAAGATGTAGTAGAACTGGTTTTCATTAACCCTGAAAACCCTGAAGAC
TTCCTTATGTACTATGAGCACCCAGATAATGGTGAAGGT
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