mRNA_C-australica_Contig_1043.5.3 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1043.5.3
Unique NamemRNA_C-australica_Contig_1043.5.3
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1043.5.3 vs. uniprot
Match: A0A835ZHK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK3_9STRA)

HSP 1 Score: 318 bits (816), Expect = 4.530e-95
Identity = 180/341 (52.79%), Postives = 225/341 (65.98%), Query Frame = 2
Query:  455 GTAKPAVDKTLLELFVGNTPQVDATKGVSEFVLVQFLNAAMKQAKLNTTEGDPIVGCRASQKFAFIELRSVEECSNALNLNGIPFMGVMLKIGRPAKYAGPHVDSKSWQELTGQPVVVS-----------SQPDPATKIHRELYIGNTTPEMNEAALSAFLSKTMEQMGLSKQ-DGSCVSQVRQSTGFSFVECRTPDEATAMLNLTGIPFMGQNLRICRPAKYPGPVTPAECWDTLLAKYKA----GELSTGPPGLKR---TRVLRLSNMLTEEDMADDESISEIETDTKEECSKFGPVKSVHIVRPSTT---APNERPGSGFVFVEFGDVQSSAQAALSL 1411
            G   P  DKT LELFVGNTP        SEFVL+ FLNAAM Q  LNT  G+PIV CR S KFAFIELRSV+E +N L+LN IPFMG  LKIGRP+KY GP V+  +WQ LTGQP +             S  DPATK++RELY+GN  P M EA+++ FL  T++++GL+    G+ V   R S  FSF+E R+ ++A AMLNL GIPFMG  LRI RPAKY GP+TPA  W  +LA+  A     + + G P       TRVLRL+NML+ +D+AD+E +++IE +TK EC+ FGPVK VHIVRPSTT   A     G G+VFVEF +  ++ +A LSL
Sbjct:   37 GAFTPVPDKTQLELFVGNTPP-----NTSEFVLLNFLNAAMAQVNLNTAPGNPIVQCRVSNKFAFIELRSVDETNNCLSLNQIPFMGTPLKIGRPSKYRGPPVNCTTWQALTGQPELAGGTMMPGAGGSMSGLDPATKVYRELYVGNVQPTMTEASIAEFLGTTLQKVGLATSAPGNPVVIARSSGNFSFIEMRSIEDANAMLNLNGIPFMGSTLRISRPAKYAGPMTPAMTWPDVLARLVAQGGGADKALGTPAAPTQPATRVLRLNNMLSADDLADEEGLADIEEETKGECATFGPVKKVHIVRPSTTDAAAEKTATGVGYVFVEFEEADAARKAMLSL 372          
BLAST of mRNA_C-australica_Contig_1043.5.3 vs. uniprot
Match: A0A7S3XTW3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTW3_HETAK)

HSP 1 Score: 306 bits (784), Expect = 1.070e-91
Identity = 174/346 (50.29%), Postives = 219/346 (63.29%), Query Frame = 2
Query:  461 AKPAVDKTLLELFVGNTPQVDATKGVSEFVLVQFLNAAMKQAKLNTTEGDPIVGCRASQKFAFIELRSVEECSNALNLNGIPFMGVMLKIGRPAKYAGPHVDSKSWQELTGQ-----PVVVSSQPDPATKIHRELYIGNTTPEMNEAALSAFLSKTMEQMGLSKQDGSCVSQVRQSTGFSFVECRTPDEATAMLNLTGIPFMGQNLRICRPAKYPGPVTPAECWDTLLAKYKAGELSTGP-------------------------------PGLKRTRVLRLSNMLTEEDMADDESISEIETDTKEECSKFGPVKSVHIVRPSTTAPNERPGSGFVFVEFGDVQSS 1390
            A  A DKT  ELFVGNTP      G SE VL++FLNAAM Q K N  EG+PI+ CR S KFAFIELR+ EE +N LNLNGIPFMG  LK+GRP KYAGP   +K+WQ+LTGQ     P  V+   DP TKI+R+LY+GN +PEM E AL  FL   MEQ+GL++Q+G+C+ QVR S  F+F+E R+ +EA+ M+NL GIPFMGQ L+I RP KYPGP  P   WD +LAKY AGEL   P                               PG   ++V+ LSNM+T +D+ADDE+  EI  DT++ECSKFG V+++ I RP    P+   G G VFV +   + +
Sbjct:   48 AAAAADKTKRELFVGNTPP-----GTSEVVLMEFLNAAMIQVKQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAV--DPQTKIYRDLYVGNCSPEMTEPALKEFLGSAMEQVGLNQQEGNCILQVRLSGTFAFIEVRSVEEASHMMNLNGIPFMGQFLKIKRPTKYPGPEVPHLNWDDILAKYMAGELKAKPKMPAVAAAPAAVPSXXXXXXXXXXXXXXXAGPGTP-SKVMTLSNMVTHDDLADDETYDEILEDTQDECSKFGAVQTIAIPRPKD-GPH---GVGLVFVHYSSEEEA 381          
BLAST of mRNA_C-australica_Contig_1043.5.3 vs. uniprot
Match: A0A7S4D6W7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6W7_HETAK)

HSP 1 Score: 308 bits (788), Expect = 1.590e-90
Identity = 175/349 (50.14%), Postives = 221/349 (63.32%), Query Frame = 2
Query:  461 AKPAVDKTLLELFVGNTPQVDATKGVSEFVLVQFLNAAMKQAKLNTTEGDPIVGCRASQKFAFIELRSVEECSNALNLNGIPFMGVMLKIGRPAKYAGPHVDSKSWQELTGQ-----PVVVSSQPDPATKIHRELYIGNTTPEMNEAALSAFLSKTMEQMGLSKQDGSCVSQVRQSTGFSFVECRTPDEATAMLNLTGIPFMGQNLRICRPAKYPGPVTPAECWDTLLAKYKAGELSTGP-------------------------------PGLKRTRVLRLSNMLTEEDMADDESISEIETDTKEECSKFGPVKSVHIVRPSTTAPNERPGSGFVFVEFGDVQSSAQA 1399
            A  A DKT  ELFVGNTP      G SE VL++FLNAAM Q K N  EG+PI+ CR S KFAFIELR+ EE +N LNLNGIPFMG  LK+GRP KYAGP   +K+WQ+LTGQ     P  V+   DP TKI+R+LY+GN +PEM E AL  FL   MEQ+GL++Q+G+C+ QVR S  F+F+E R+ +EA+ M+NL GIPFMGQ L+I RP KYPGP  P   WD +LAKY AGEL   P                               PG   ++V+ LSNM+T +D+ADDE+  EI  DT++ECSKFG V+++ I RP    P+   G G VFV +   + + +A
Sbjct:   48 AAAAADKTKRELFVGNTPP-----GTSEVVLMEFLNAAMIQVKQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAV--DPQTKIYRDLYVGNCSPEMTEPALKEFLGSAMEQVGLNQQEGNCILQVRLSGTFAFIEVRSVEEASHMMNLNGIPFMGQFLKIKRPTKYPGPEVPHLNWDDILAKYMAGELKAKPKMPAVAAAPAAVPSXXXXXXXXXXXXXXXAGPGTP-SKVMTLSNMVTHDDLADDETYDEILEDTQDECSKFGAVQTIAIPRPKD-GPH---GVGLVFVHYSSEEEAKKA 384          
BLAST of mRNA_C-australica_Contig_1043.5.3 vs. uniprot
Match: A0A7S2V6E6_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E6_9STRA)

HSP 1 Score: 304 bits (779), Expect = 1.770e-89
Identity = 166/316 (52.53%), Postives = 216/316 (68.35%), Query Frame = 2
Query:  476 DKTLLELFVGNTPQVDATKGVSEFVLVQFLNAAMKQAKLNTTEGDPIVGCRASQKFAFIELRSVEECSNALNLNGIPFMGVMLKIGRPAKYAGPHVDSKSWQELTGQPVVV-SSQPDPATKIHRELYIGNTTPEMNEAALSAFLSKTMEQMGLSKQDGSCVSQVRQSTGFSFVECRTPDEATAMLNLTGIPFMGQNLRICRPAKYPGPVTPAECWDTLLAKYKAGELSTGPPGLKR--TRVLRLSNMLTEEDMADDESISEIETDTKEECSKFGPVKSVHIVRPSTTAPNERPGSGFVFVEFGDVQSSAQAALSLR 1414
            DK   ELFVGNTP      G SE VL++FLNAA+ Q KL T  G+PI+GCR S KFAFIELRS EE +N L+LNGIPFMG +LKIGRP KY GP + + +WQ LTGQ     +S  DP+TK++RELYIG+TT EM E  L  FL   M+Q+GL+ Q+G+ + QVR S  F+FVE R+ +EA   LNL  IPFMGQ L+I RP+KYPGP  P   W+ +LAKY AGE+ TG    ++  +RV+ LSNM+T +++ DD +  EI  DT++EC K+G V+S+ I RP   AP+   G G VF+EF     +A+A  +L+
Sbjct:  203 DKAFRELFVGNTPP-----GTSELVLMEFLNAALNQVKLTTAPGNPIIGCRVSNKFAFIELRSAEETNNCLSLNGIPFMGQLLKIGRPTKYCGPVIQASTWQALTGQQAPEGASVVDPSTKLYRELYIGSTTAEMTELGLQEFLGTAMQQVGLTLQEGNPIVQVRHSGTFAFVELRSIEEANNCLNLNSIPFMGQFLKIGRPSKYPGPQVPHLNWEDVLAKYMAGEMPTGGGAAQQQPSRVIALSNMVTTDELMDDTTYQEIVEDTRDECGKYGAVQSMEIPRPG--APH---GVGKVFIEFTSTADAAKAIGALK 508          
BLAST of mRNA_C-australica_Contig_1043.5.3 vs. uniprot
Match: A0A7S2HGX3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HGX3_9STRA)

HSP 1 Score: 275 bits (703), Expect = 1.330e-80
Identity = 157/350 (44.86%), Postives = 212/350 (60.57%), Query Frame = 2
Query:  419 VNPATSAAVLASGTAKPAVDKTLLELFVGNTPQVDATKGVSEFVLVQFLNAAMKQAKLNTTEGDPIVGCRASQKFAFIELRSVEECSNALNLNGIPFMGVMLKIGRPAKYAGPHVDSKSWQELTGQPVVVSSQPDPAT------KIHRELYIGNTTPEMNEAALSAFLSKTMEQMGLSKQDGSCVSQVRQSTGFSFVECRTPDEATAMLNLTGIPFMGQNLRICRPAKYPGPVTPAECWDTLLAKYKAGELST----GPPGLKRT---------RVLRLSNMLTEEDMADDESISEIETDTKEECSKFGPVKSVHIVRPSTTAPNERPGSGFVFVEFGDVQSSAQAALSL 1411
            V P  +A ++ S     A DK   ELFVGNTP      G SE +L+ FLN AM++ K+   +  PI+ CR +QKFAF+E  S++E + ALNLNGIPFMG  L++ RP+KYAGPHV SK+WQELTGQ +     P P        K++REL+IGNTTPEM E  L+ FL K MEQ+GLS Q G+ ++  R S  F+F+E R+ +EA   LNL  IP++G  LR+ RP+KY G  T    W+ +LAKY +GEL      G P    T         RV+ L NMLT+E++  D+   EI  DTKEECS+FG +K++ I       P + PG+  +F+E+     +A+A   L
Sbjct:   11 VVPGAAAPLMVSPAVAAAQDKVNRELFVGNTPP-----GTSETLLMAFLNGAMRRTKICAADATPIIQCRTNQKFAFVECASIQEANLALNLNGIPFMGSSLRVSRPSKYAGPHVASKTWQELTGQALPAGLTPVPENTSPAEDKVNRELFIGNTTPEMTEGMLTDFLGKAMEQVGLSNQPGNPITACRVSGKFAFIELRSKEEAANALNLNNIPYLGAQLRVGRPSKYTGVQTSHGNWEDILAKYMSGELKLPSQGGAPAAAATPAEDVGSPTRVVELKNMLTKEELTSDQDYEEIMEDTKEECSQFGSLKNLVI-------PRDGPGATKIFLEYLSTDDAAKAIQGL 348          
BLAST of mRNA_C-australica_Contig_1043.5.3 vs. uniprot
Match: A0A7S4RDP7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RDP7_9STRA)

HSP 1 Score: 270 bits (691), Expect = 4.390e-78
Identity = 154/340 (45.29%), Postives = 206/340 (60.59%), Query Frame = 2
Query:  461 AKPAVDKTLLELFVGNTPQVDATKGVSEFVLVQFLNAAMKQAKLNTTEGDPIVGCRASQKFAFIELRSVEECSNALNLNGIPFMGVMLKIGRPAKYAGPHVDSKSWQELTGQPVVVSSQPDPAT------KIHRELYIGNTTPEMNEAALSAFLSKTMEQMGLSKQDGSCVSQVRQSTGFSFVECRTPDEATAMLNLTGIPFMGQNLRICRPAKYPGPVTPAECWDTLLAKYKAGEL-----------------STGPPGLKRTRVLRLSNMLTEEDMADDESISEIETDTKEECSKFGPVKSVHIVRPSTTAPNERPGSGFVFVEFGDVQSSAQAALSL 1411
            A  A DK   ELFVGNTP      G SE +L QFLN AM++ KL   +  PI+ CR +QKFAF+E  S+ + + ALNLNGIPFMG  L++ RP+KYAGPHV SK+WQELTGQ + V   P P        K++REL+IGNTTPEM E+ L+ FL K MEQ+GL+   G+ ++  R S  F+F+E R+ +E    LNL  IP++G  LR+ RP+KY G  TP   W+ +LAKY +GEL                 +TG P    TRV+ L NMLT +++  D+   EI  DTKEECS+FG +K++ I       P + PG+  +F+E+     +A A   L
Sbjct:   87 ATAAQDKVNRELFVGNTPP-----GTSEALLTQFLNGAMRRTKLCAADAMPIIQCRTNQKFAFVECASIADANLALNLNGIPFMGSSLRVSRPSKYAGPHVPSKTWQELTGQTLPVGLTPVPENTSPAEDKVNRELFIGNTTPEMTESMLTDFLGKAMEQVGLATHPGNPITACRVSGKFAFIELRSKEETANALNLNNIPYLGAQLRVGRPSKYVGAQTPHGNWEDILAKYMSGELKLPSQGGAPAAAPAPAANTGVP----TRVVELKNMLTMDELTSDQDYEEIMEDTKEECSQFGSLKNLVI-------PRDGPGATKIFLEYMSTDDAAAAIKGL 410          
BLAST of mRNA_C-australica_Contig_1043.5.3 vs. uniprot
Match: A0A7S4D6X1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6X1_HETAK)

HSP 1 Score: 270 bits (689), Expect = 5.190e-78
Identity = 141/240 (58.75%), Postives = 170/240 (70.83%), Query Frame = 2
Query:  461 AKPAVDKTLLELFVGNTPQVDATKGVSEFVLVQFLNAAMKQAKLNTTEGDPIVGCRASQKFAFIELRSVEECSNALNLNGIPFMGVMLKIGRPAKYAGPHVDSKSWQELTGQ-----PVVVSSQPDPATKIHRELYIGNTTPEMNEAALSAFLSKTMEQMGLSKQDGSCVSQVRQSTGFSFVECRTPDEATAMLNLTGIPFMGQNLRICRPAKYPGPVTPAECWDTLLAKYKAGELSTGP 1165
            A  A DKT  ELFVGNTP      G SE VL++FLNAAM Q K N  EG+PI+ CR S KFAFIELR+ EE +N LNLNGIPFMG  LK+GRP KYAGP   +K+WQ+LTGQ     P  V+   DP TKI+R+LY+GN +PEM E AL  FL   MEQ+GL++Q+G+C+ QVR S  F+F+E R+ +EA+ M+NL GIPFMGQ L+I RP KYPGP  P   WD +LAKY AGEL   P
Sbjct:   48 AAAAADKTKRELFVGNTPP-----GTSEVVLMEFLNAAMIQVKQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAV--DPQTKIYRDLYVGNCSPEMTEPALKEFLGSAMEQVGLNQQEGNCILQVRLSGTFAFIEVRSVEEASHMMNLNGIPFMGQFLKIKRPTKYPGPEVPHLNWDDILAKYMAGELKAKP 280          
BLAST of mRNA_C-australica_Contig_1043.5.3 vs. uniprot
Match: A0A7S4I336_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I336_9STRA)

HSP 1 Score: 268 bits (686), Expect = 2.030e-77
Identity = 156/338 (46.15%), Postives = 202/338 (59.76%), Query Frame = 2
Query:  470 AVDKTLLELFVGNTPQVDATKGVSEFVLVQFLNAAMKQAKLNTTEGDPIVGCRASQKFAFIELRSVEECSNALNLNGIPFMGVMLKIGRPAKYAGPHVDSKSWQELTGQPV----------VVSSQPDPATKIHRELYIGNTTPEMNEAALSAFLSKTMEQMGLSKQDGSCVSQVRQSTGFSFVECRTPDEATAMLNLTGIPFMGQNLRICRPAKYPGPVTPAECWDTLLAKYKAGELS--------------TGPPGLKRTRVLRLSNMLTEEDMADDESISEIETDTKEECSKFGPVKSVHIVRPSTTAPNERPGSGFVFVEFGDVQSSAQAALSL 1411
            A DK   ELFVGNTP      G SE +L+QFL+ AM++  L    G PIV CR +QKFAF+E  +V+  + ALNLNGIPF+G  LK+ RP+KYAGP V SKSWQELTG  +          +  S  D   KI+REL+IGNTTPEM E  LS FL K MEQ+GLSK  G+ +   R S  F+F+E RT DEA + LNL  IP++G  LR+ RP+KY GP TP   W+ +LAKY +GEL                 P  +  T V+ L  MLT++D+ +D+   EI  DT EEC +FG +K V I       P   PG+  +F+E+   + +A+A  SL
Sbjct:   82 AQDKVNRELFVGNTPP-----GTSEMLLIQFLSGAMRRTGLCKPSGSPIVTCRVNQKFAFVECATVDCANRALNLNGIPFLGSCLKVSRPSKYAGPFVPSKSWQELTGTALPNGLAGAGGALAGSAED---KINRELFIGNTTPEMTEQMLSDFLGKAMEQVGLSKAPGNPIVTCRTSGKFAFIELRTTDEAASALNLNNIPYLGAQLRVGRPSKYTGPETPHGNWEDILAKYMSGELQLPSKDGGGGAAPAPAAPHAIDATCVVELCQMLTQQDLENDDEYKEILEDTTEECGQFGSLKRVVI-------PRSGPGATKIFLEYATKEDAARAIASL 404          
BLAST of mRNA_C-australica_Contig_1043.5.3 vs. uniprot
Match: A0A448YVH2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVH2_9STRA)

HSP 1 Score: 266 bits (680), Expect = 7.480e-77
Identity = 147/326 (45.09%), Postives = 207/326 (63.50%), Query Frame = 2
Query:  470 AVDKTLLELFVGNTPQVDATKGVSEFVLVQFLNAAMKQAKLNTTEGDPIVGCRASQKFAFIELRSVEECSNALNLNGIPFMGVMLKIGRPAKYAGPHVDSKSWQELTGQPVVVSSQPDPAT-KIHRELYIGNTTPEMNEAALSAFLSKTMEQMGLSKQDGSCVSQVRQSTGFSFVECRTPDEATAMLNLTGIPFMGQNLRICRPAKYPGPVTPAECWDTLLAKYKAGELSTG--PPG---------LKRTRVLRLSNMLTEEDMADDESISEIETDTKEECSKFGPVKSVHIVRPSTTAPNERPGSGFVFVEFGDVQSSAQAALSL 1411
            A +K   ELFVGNTP      G SE +L+QFLN AM++ KL   +  PI+ CR + KFAF+EL S E  + ALN+NGIPF+G +LK+ RP+KYAGPHV +++WQ+LTGQ +   +  D    KI+REL++GNTTPEM E  L  FL   MEQ+GL+   G+ ++  R S  F+FVE R+P+EA   LNL  IPFMG  LR+ RP+K+ GP      W+ +LAKY +GEL  G   PG         +K TRV+ L NMLT ED++ +E  +E+  DT++EC ++G + +V+I +         PG+  VF+E+   + +++A  SL
Sbjct:   68 AQEKINRELFVGNTPP-----GTSEMLLLQFLNGAMRRVKLCGEQETPILNCRVNSKFAFVELVSAEMANKALNMNGIPFLGAVLKVSRPSKYAGPHVPARTWQQLTGQALPAGTVLDAEQEKINRELFVGNTTPEMTERMLREFLGNAMEQVGLNVMPGNPITSCRVSGKFAFVELRSPEEAANALNLNNIPFMGAQLRVGRPSKWSGPPDSHGNWEDVLAKYMSGELQAGNTAPGQGAAAMNSNVKATRVVELKNMLTXEDLSVEEEYNELVEDTEQECKQYGQLLNVYIPKKG------EPGATKVFLEYASTEDASKAIKSL 382          
BLAST of mRNA_C-australica_Contig_1043.5.3 vs. uniprot
Match: A0A7S0G8A8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G8A8_9STRA)

HSP 1 Score: 258 bits (659), Expect = 5.030e-74
Identity = 144/290 (49.66%), Postives = 184/290 (63.45%), Query Frame = 2
Query:  476 DKTLLELFVGNTPQVDATKGVSEFVLVQFLNAAMKQAKLNTTEGDPIVGCRASQKFAFIELRSVEECSNALNLNGIPFMGVMLKIGRPAKYAGPHVDSKSWQELTGQPVV-----VSSQPDPATKIHRELYIGNTTPEMNEAALSAFLSKTMEQMGLSKQDGSCVSQVRQSTGFSFVECRTPDEATAMLNLTGIPFMGQNLRICRPAKYPGPVTPAECWDTLLAKYKAGEL---STGPPGLKR-----------TRVLRLSNMLTEEDMADDESISEIETDTKEECSKFG 1288
            DK + ELFVGNTPQ     G SE +L +FLN AM++  L      P++ CR S KFAFIEL SV+  + ALNLNGIPFMG+ LK+ RP+KY+GPHV + SWQELTGQP+      +S       K++REL+IGNTTPEM E  L  FL K MEQ+GL+ Q G+ ++  R S  F+F+E R+ DE    LNL  IP+MG  LR+ RP+KY G  TP   W+ +LAKY +GEL   S G  G              T+V+ L NMLT E++  DE  +EI  DTK+ECS+FG
Sbjct:  103 DKVMRELFVGNTPQ-----GTSEILLREFLNGAMRRTNLCGPTDTPVIQCRVSAKFAFIELSSVDVTNIALNLNGIPFMGMSLKVSRPSKYSGPHVAASSWQELTGQPLPSNIAPISDSKAAEDKVNRELFIGNTTPEMTEQMLKDFLGKAMEQVGLTTQPGNPINACRVSGKFAFIELRSKDETANALNLNNIPYMGAQLRVGRPSKYIGEQTPHGNWEDILAKYMSGELKLPSEGGAGAAAVVNNVTPTATPTKVVVLENMLTPEELVSDEDYNEIMEDTKDECSQFG 387          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1043.5.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHK3_9STRA4.530e-9552.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XTW3_HETAK1.070e-9150.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4D6W7_HETAK1.590e-9050.14Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2V6E6_9STRA1.770e-8952.53Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S2HGX3_9STRA1.330e-8044.86Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S4RDP7_9STRA4.390e-7845.29Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4D6X1_HETAK5.190e-7858.75Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4I336_9STRA2.030e-7746.15Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A448YVH2_9STRA7.480e-7745.09Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S0G8A8_9STRA5.030e-7449.66Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1043contigC-australica_Contig_1043:7942..12638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0SQC2
PFAMsRRM_1
Model size2784
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons15
Evalue6.66e-72
EggNOG OGsKOG0120@1|root,KOG0120@2759|Eukaryota,2XDBR@2836|Bacillariophyta
DescriptionRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Cds size1116
COG categoryA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1043.5.3prot_C-australica_Contig_1043.5.3Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1043 8494..11132 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586780.074851-UTR-C-australica_Contig_1043:7941..80161682586780.074851-UTR-C-australica_Contig_1043:7941..8016Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1043 7942..8016 +
1682586780.0841863-UTR-C-australica_Contig_1043:8080..81191682586780.0841863-UTR-C-australica_Contig_1043:8080..8119Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1043 8081..8119 +
1682586780.0923846-UTR-C-australica_Contig_1043:8200..83021682586780.0923846-UTR-C-australica_Contig_1043:8200..8302Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1043 8201..8302 +
1682586780.100846-UTR-C-australica_Contig_1043:8381..84931682586780.100846-UTR-C-australica_Contig_1043:8381..8493Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1043 8382..8493 +
1682586780.2265275-UTR-C-australica_Contig_1043:11132..118021682586780.2265275-UTR-C-australica_Contig_1043:11132..11802Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1043 11133..11802 +
1682586780.2400246-UTR-C-australica_Contig_1043:11968..126381682586780.2400246-UTR-C-australica_Contig_1043:11968..12638Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1043 11969..12638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586780.1100051-CDS-C-australica_Contig_1043:8493..85841682586780.1100051-CDS-C-australica_Contig_1043:8493..8584Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1043 8494..8584 +
1682586780.1242087-CDS-C-australica_Contig_1043:8661..87741682586780.1242087-CDS-C-australica_Contig_1043:8661..8774Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1043 8662..8774 +
1682586780.1370034-CDS-C-australica_Contig_1043:8952..91511682586780.1370034-CDS-C-australica_Contig_1043:8952..9151Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1043 8953..9151 +
1682586780.1465569-CDS-C-australica_Contig_1043:9323..93831682586780.1465569-CDS-C-australica_Contig_1043:9323..9383Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1043 9324..9383 +
1682586780.1556044-CDS-C-australica_Contig_1043:9510..96121682586780.1556044-CDS-C-australica_Contig_1043:9510..9612Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1043 9511..9612 +
1682586780.1645184-CDS-C-australica_Contig_1043:9693..97991682586780.1645184-CDS-C-australica_Contig_1043:9693..9799Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1043 9694..9799 +
1682586780.1754227-CDS-C-australica_Contig_1043:10003..100411682586780.1754227-CDS-C-australica_Contig_1043:10003..10041Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1043 10004..10041 +
1682586780.1838777-CDS-C-australica_Contig_1043:10212..103091682586780.1838777-CDS-C-australica_Contig_1043:10212..10309Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1043 10213..10309 +
1682586780.1917434-CDS-C-australica_Contig_1043:10565..106981682586780.1917434-CDS-C-australica_Contig_1043:10565..10698Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1043 10566..10698 +
1682586780.2014775-CDS-C-australica_Contig_1043:10807..108861682586780.2014775-CDS-C-australica_Contig_1043:10807..10886Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1043 10808..10886 +
1682586780.2115343-CDS-C-australica_Contig_1043:11034..111321682586780.2115343-CDS-C-australica_Contig_1043:11034..11132Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1043 11035..11132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1043.5.3

>prot_C-australica_Contig_1043.5.3 ID=prot_C-australica_Contig_1043.5.3|Name=mRNA_C-australica_Contig_1043.5.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=372bp
MNPLAIAALAASMPRSSASTALAVQQAMAAVNPATSAAVLASGTAKPAVD
KTLLELFVGNTPQVDATKGVSEFVLVQFLNAAMKQAKLNTTEGDPIVGCR
ASQKFAFIELRSVEECSNALNLNGIPFMGVMLKIGRPAKYAGPHVDSKSW
QELTGQPVVVSSQPDPATKIHRELYIGNTTPEMNEAALSAFLSKTMEQMG
LSKQDGSCVSQVRQSTGFSFVECRTPDEATAMLNLTGIPFMGQNLRICRP
AKYPGPVTPAECWDTLLAKYKAGELSTGPPGLKRTRVLRLSNMLTEEDMA
DDESISEIETDTKEECSKFGPVKSVHIVRPSTTAPNERPGSGFVFVEFGD
VQSSAQAALSLRYWLLWLIRE*
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mRNA from alignment at C-australica_Contig_1043:7942..12638+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1043.5.3 ID=mRNA_C-australica_Contig_1043.5.3|Name=mRNA_C-australica_Contig_1043.5.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4697bp|location=Sequence derived from alignment at C-australica_Contig_1043:7942..12638+ (Chrysoparadoxa australica CS_1217)
CCGCAGTCATAGCCGGCACCGCCGCAGGCACTCAAGGTCTAGGGACAGAA GATCCAGGGACGCGGACAGGCACAGGTGAGTAGGGGAAAGACCAAGGGTG GGCAATCTGCTCTGACCTGAGCTGTACCGCAATTTCAAGGAGCCGGAAGC ACCGCAAGAGCCGTAGCAGAAGTGACAGGTTAGTTCTGCCTTCACCATTG ACCCAGTTGCTCGCTTTCATCTCACCACCACCACCACCACCACCACTACC CCACAACAGTAGGCGCAGAAGCCGTCATAGGCGAGGCCGAGACCGGTATG ACAGTGATGGCAGCCGTGATAGCTACAGGGGATCATCTCGGCGCAGGAAG AGCAGCAGGAGGTAGCTTGACTGACCCAACCCCCGCTGGCAGAGGAAAGG GCCTGTGAAGATTGCCTGATCAGCCTCTTCTGCCCCGCAGAACACGCAGC TACAGCAGCAGCAGCAGCAGCAGCAGCCGTAGTCGCAGCCGGACCCCTCA TAAGGCGTCCTCTGCTGGCCTGGCTTCCATAGTCCCATCTCGTGCAGGGG TCATGAATCCACTAGCCATTGCAGCTCTTGCTGCTTCCATGCCACGTTCC TCAGCTAGCACCGCTCTGGCTGTGCAGCAAGCCATGGCAGCAGGTAAGGT CAGGCTTGATTGGTTGCCATGCCCTTAACGTGTTACCATTACCTTCTCCT GCTTCTCTCCTTCCCTGCAGTCAACCCTGCGACAAGTGCTGCAGTGCTGG CCTCTGGCACAGCAAAGCCTGCTGTGGACAAGACATTGCTCGAGCTGTTT GTTGGGAATACGCCTCAGGTGGATGCTACGAAGGCATGAGATGACATGAG CGCCTGACCTGACCTGGCCTGTGGCCTACAAGGAATTACTCAAGAATCAT TAACCTAAAACCATTGGCAAGTATTGGCTTAAAGCCAGTGGCCTAAAGCA AAGCCGGTGACTTAAAGCCAGTCAAGCCAGTCACCTCACCTACCCTAACC CTACCCCTCAGGGTGTCTCAGAGTTTGTGCTAGTTCAGTTCCTCAATGCA GCCATGAAGCAAGCCAAACTTAACACTACAGAGGGAGACCCCATCGTTGG CTGCCGAGCCAGCCAGAAGTTTGCTTTTATTGAACTACGAAGTGTGGAGG AGTGCAGCAATGCCCTCAACTTGAATGGCATCCCTTTTATGGGTGTCATG CTAAAGATAGGTAATGGTCAAATGGTCATATGGTCGAATGTTCAATAGTT CTAGCTGCCATGTGAAGATTCTCAGTCTCAGTCACCCCTTACCCCTTGCC CTTGCCTAGCTTTACAGCGCATAAGCTCATCTCCTGCTGTCCTAGACTCA CTCAACTCTCCTCTACTGTGGTCATCTTGCAGGGCGTCCAGCCAAATACG CCGGCCCTCATGTTGATTCCAAGTCATGGCAAGAGTTGACAGGTTCAGAT ACTCACCTCCTCTCGTTCACCTTCCCTCTTTCTTGCTTATTGCCTTTCAT GCCCTTATGTCATTGCCCCTTCCTAAGTCATGTCACCAATGATCATGCTC CTTTGTGATCCCTGAGCAGGGCAGCCAGTAGTTGTGTCGTCACAGCCAGA CCCAGCCACCAAGATTCACAGGGAGCTGTACATTGGCAACACCACACCGG AAATGAATGAAGCTGCATTATGTGAGCAGATTGAATACCGACTTGTTTGA TCTTAACTTGTCTATACCTATTCTGGCACTGACTACTTGACACTGACTGC AGCGGCCTTCCTGAGCAAGACTATGGAGCAAATGGGTCTCTCCAAGCAGG ACGGTAGTTGCGTTTCCCAAGTCAGGCAGAGCACTGGCTTTTCATTTGTG GAGTGCAGGTGTGTTTCCCTGATCTGAACAACACGTGCAGCCCCGCTGTC CTCTTGTTCCATGCCCTTCCTAGAGAGACAGTGGCGCCTTAGCCAACTGG CTAGCCTAGCCCTCTCTTCATGATTATGAGACTGACCTCAATTCCGGCAG CTCGACTGTCACAAGGTCTCATATCTCATGCCAGCCTCTTGCCCTATCTC TCTTTAACACAGAACACCTGATGAGGCAACAGCAATGCTCAACCTCACTG GTAACTAAGCACTTGCCTCACCAAGCTTGGGATGACTTGACATAATGCTG CATGTTTCTCTCCCCCCACAACCCCCCTCTACCGACATGACCCCAGTGTA GTTTGCCGGCTGACCTGACGCAAGCTGATACAATCTAACACAAGCAGCAA CGCTTTTTCGCTTTCTGTAAGGCATCCCATTCATGGGTCAGAACCTTCGC ATCTGCCGCCCTGCTAAGTACCCTGGACCTGTCACACCAGCTGAATGCTG GGACACATTACTAGCCAAGTAAGGTGCAGGCGTGTGGTAATAGCACACAC AAGCTTAGGGATAGGATGACAGTTTAGGTTTCTTGTTTGGAGTTAGGGTT TGGAGTTATTGTGAGGTCGGTCAAAAGCTGGCGCTGCCTGATGTAGCATA GCCCTGACAGCACCCCGTAATGTAGCTAGTACATGAGAGGCTGGCCCTGG TGTTGGTGCTAGCGCTGTCAGTGACCTCAACCTCAACCTCACAGTACCCT CCCACTCTCTGCTACACTCCATAGGTACAAGGCTGGTGAACTGTCAACTG GCCCCCCTGGTCTGAAACGGACGCGAGTCTTGAGACTCAGCAACATGCTG ACAGAAGAGGATATGGCGGATGACGAGAGCATATCCGAGATTGAAACAGA CACCAAGGTAATACCTTTGATAATGCCCGTCAGCCATCAAGGATGGGCAT GATTGAGCGGTCTGGTGAACCTATCACAGAACCTCCTTGATTATCCTTGG ACTAAACCTTTCACAGGAAGAGTGCTCTAAGTTTGGTCCTGTGAAGAGTG TGCACATTGTAAGACCCAGCACAACCGCACCGAATGAACGGCCAGGTAGA GTGCAGTCCACTTCAATGCTTCAACATGAGGACCTACTTATTGACAGAAC AAGCAGTGCGTATCTAGACGTGGAAGAGCCCCTCGTGGCACCTGTGACCT GGTCTTAAACAAGCCAGCTCTACTGGCTCTCTAATGGCTCTAGGCTCTGG CTTTGTCTTCGTGGAGTTTGGTGATGTGCAGTCTTCTGCTCAGGCTGCTC TTAGTCTCAGGTATTGGCTGCTGTGGTTGATTCGTGAATGACAAGAGAAG AGTGAGATGGTTGCACGATTGATAAGCATGAAATGAAGGCTACCTTCCGC GCCTCTCACTGGTTTGCCTAAGTGCCTATAAACTTTGACCCTAGCCCTTA CTGCTCACTTCTCTCTCACACAGAGGTAGGTTGTTTGATGGCCGTAAAGT GGAAGTTGTCTGGTGGGATGAAGTGAAGTTTGCGGCAAGGGACTTTAGGG CCAGTGGTGAGGCCAAGGAAGGGGCAGATGAGGGCGAGCAGGATCCAGAA AAGGAGAAGAAGGCTGCTGAGAAGGATGCCAGGAAGAAAGCAAAGAAGGA AGCTAAGCGAAAGGCGAAAGAAGAGGCTGCGGCTGAGGCTGGGGCAGATG CTGGAGGGGCTAAGGAAGAAGCAGCTGAGGTATCTGGAGTGAAGGGAGAG GCACCAGGCGTGGAGGCTGCTGATGGGGAAAAAGGGTGTGCAGAGACGGG GAAGGAGGAAGAGACAGTCAAGGAAAAGGTGGGGAGTGAAGGCCAAGAGG CAATGCAAGTGGATGATGAGACCAAGGAGGATGTGATGAAGTGCTGAAAG GCTCTACTTTGGCTGATGATCTCAAGAACTTGACAGGGTAGGATTTAGTG GCAGATTGCTGGTTCCGAACAGCAGCAAGGCAAGGGGGGGTCATACTTCC GCATCAGAAAGGTGTCAACCCATTGGGCCAAAGCTCATTGACGCACAGTG CTGGTGCCAAAGGCCTTGACGTTAGTTGCATGGATGACAGACGCTGCCTA ATCTAACGTTTGTTATGTGTTTGCTTCCCCTTCTCTCCCCTTGCTCTGCT GCTTTCCTGCTTTGCTCCCTCCTGCAGCTTGCCCTGTTTTTGTTTTGCTG GCTGGTCTGCCTGCCCTTTCTCTTTTTCTGTTGCTTTGCTGTTGCTTTGC TGCTGCTCTGCTCTGCTGTGCTCTCTCTTTTCTGTTTCCTCCGTGTTTGC TGCATGCCTTTCTCCCCTCCCCTTCTACCTTTGATTTCACCGTACTCGAA CCCCACCACCATGCTCTATTGCTTTTTGCTCATGGTTTGAAGCTCTCTTG GGTAACAACTGATCTACTAAGGATCATGAGGCCAGTCCTTTAGTGGACAC ATCCTTGGACCTCCTCTCCTGCAGGGCTCACTGTTTTCTCCTGCCCTAAC CCCCCTCTCTTACTTACTATGGTCCTCACTTTTAGTGCCATCGGGCCGTC ATGCCTCTCTCTCTCTCTCTCTCCCTGTCTGCCTGCCTGCCTCACTTCTC CCACTGCTAAGAGTGACCACTGGGGAAACCACTTTTCCGGCCAGCAGAGC CTTCGCCAGGTATCGGCCATGGCTATATCTGCCCTCTCAACAGCAAGCCA CCAAGAAAGGCAAGAGTTGTATCATTCACCTTCTCAATCACTTGAAGTGG CGGCTTCTCCCATGGATTCCCATACGCTAGAACGCCAGTCATTGTACAAC TCAGTATTTAGTGGAGTGGAGTAGCAACCTTATCTCGCCAATTGGGT
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Coding sequence (CDS) from alignment at C-australica_Contig_1043:7942..12638+

>mRNA_C-australica_Contig_1043.5.3 ID=mRNA_C-australica_Contig_1043.5.3|Name=mRNA_C-australica_Contig_1043.5.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1116bp|location=Sequence derived from alignment at C-australica_Contig_1043:7942..12638+ (Chrysoparadoxa australica CS_1217)
ATGAATCCACTAGCCATTGCAGCTCTTGCTGCTTCCATGCCACGTTCCTC
AGCTAGCACCGCTCTGGCTGTGCAGCAAGCCATGGCAGCAGTCAACCCTG
CGACAAGTGCTGCAGTGCTGGCCTCTGGCACAGCAAAGCCTGCTGTGGAC
AAGACATTGCTCGAGCTGTTTGTTGGGAATACGCCTCAGGTGGATGCTAC
GAAGGGTGTCTCAGAGTTTGTGCTAGTTCAGTTCCTCAATGCAGCCATGA
AGCAAGCCAAACTTAACACTACAGAGGGAGACCCCATCGTTGGCTGCCGA
GCCAGCCAGAAGTTTGCTTTTATTGAACTACGAAGTGTGGAGGAGTGCAG
CAATGCCCTCAACTTGAATGGCATCCCTTTTATGGGTGTCATGCTAAAGA
TAGGGCGTCCAGCCAAATACGCCGGCCCTCATGTTGATTCCAAGTCATGG
CAAGAGTTGACAGGGCAGCCAGTAGTTGTGTCGTCACAGCCAGACCCAGC
CACCAAGATTCACAGGGAGCTGTACATTGGCAACACCACACCGGAAATGA
ATGAAGCTGCATTATCGGCCTTCCTGAGCAAGACTATGGAGCAAATGGGT
CTCTCCAAGCAGGACGGTAGTTGCGTTTCCCAAGTCAGGCAGAGCACTGG
CTTTTCATTTGTGGAGTGCAGAACACCTGATGAGGCAACAGCAATGCTCA
ACCTCACTGGCATCCCATTCATGGGTCAGAACCTTCGCATCTGCCGCCCT
GCTAAGTACCCTGGACCTGTCACACCAGCTGAATGCTGGGACACATTACT
AGCCAAGTACAAGGCTGGTGAACTGTCAACTGGCCCCCCTGGTCTGAAAC
GGACGCGAGTCTTGAGACTCAGCAACATGCTGACAGAAGAGGATATGGCG
GATGACGAGAGCATATCCGAGATTGAAACAGACACCAAGGAAGAGTGCTC
TAAGTTTGGTCCTGTGAAGAGTGTGCACATTGTAAGACCCAGCACAACCG
CACCGAATGAACGGCCAGGCTCTGGCTTTGTCTTCGTGGAGTTTGGTGAT
GTGCAGTCTTCTGCTCAGGCTGCTCTTAGTCTCAGGTATTGGCTGCTGTG
GTTGATTCGTGAATGA
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