mRNA_C-australica_Contig_1042.4.1 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1042.4.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE) HSP 1 Score: 213 bits (542), Expect = 5.750e-60 Identity = 119/289 (41.18%), Postives = 163/289 (56.40%), Query Frame = 2
Query: 2 HNRPDVVKYRGEYVARCERLGPRAPLWMQYEE-----EEWNRLNK---EGKMVKAVVHVIVTQGADGKV*KIYETHVDTWEKTDSRRGWNTQEGSVLMRGGRPSQRWKRGTLVQGVCEFDHAPDKCKCHLPVYWIGQDESVFKAYQLNAKEWVIGGTSKMRKKTDGPGLMVSAMQDEERGLGFPITQAELHKVNEKRQERNLPPLDGSPGLLYFDYGKSKEGYWDNDKFEKQVQDLMFVLDVLHRGRQLVLEIDWSAGHAKMADDALSTNNTNAGFGGKQRKMRDTVVT 844
H + DVV YRG+Y+ +L R PLW++ + EE RL+ K A V+ V +G + E HVD S ++ + GG S R++ + CE H P KCKC+ V IGQDESV+KAY KEWV+ G +RKKT+GPG MVSA QDE G G P+T L VN +R+E+ L SPGL + YGK+K+GYW D+F++Q++D + VLDV Q+V+EID S+GH + +D L N N +GGKQ+ +RDTV+T
Sbjct: 485 HEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAKDFCAEVYDCVVEGRE-----CIEFHVDLLRDNGSVDRFDDLRAELGPEGGHFSVRFEEAAALP--CEHFHTPAKCKCNRKVRHIGQDESVYKAYAREGKEWVVQGVRGLRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQMEDALDVLDVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKYGGKQKVLRDTVMT 766
BLAST of mRNA_C-australica_Contig_1042.4.1 vs. uniprot
Match: A0A7S3AY06_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AY06_9EUKA) HSP 1 Score: 194 bits (494), Expect = 2.860e-57 Identity = 86/172 (50.00%), Postives = 121/172 (70.35%), Query Frame = 2
Query: 326 CEFDHAPDKCKCHLPVYWIGQDESVFKAYQLNAKEWVIGGTSKMRKKTDGPGLMVSAMQDEERGLGFPITQAELHKVNEKRQERNLPPLDGSPGLLYFDYGKSKEGYWDNDKFEKQVQDLMFVLDVLHRGRQLVLEIDWSAGHAKMADDALSTNNTNAGFGGKQRKMRDTVV 841
CE+ H + CKCH P+Y +GQDES+FKA+ + +W+I G +RKKT+GPG MVSAMQDE RG GFP+T AEL N R +R+ P LD SPG+ + +YGK ++GYWD + F++QV D + + LH QL+LE+DWS+GHAK + AL+ N+ N +GGKQ+ R++ +
Sbjct: 2 CEYGHRKEVCKCHCPLYHVGQDESIFKAFLYSTTQWIIKGVRGVRKKTEGPGEMVSAMQDEIRGFGFPMTTAELDATNVLRGKRSRPALDCSPGVRFLNYGKGRDGYWDYEMFKQQVVDFIDAFETLHPDWQLLLEVDWSSGHAKHREGALNVNSMNVKYGGKQKTPRESRI 173
BLAST of mRNA_C-australica_Contig_1042.4.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE) HSP 1 Score: 188 bits (477), Expect = 1.340e-51 Identity = 94/192 (48.96%), Postives = 123/192 (64.06%), Query Frame = 2
Query: 275 GGRPSQRWKRGTLVQGVCEFDHAPDKCKCHLPVYWIGQDESVFKAYQLNAKEWVIGGTSKMRKKTDGPGLMVSAMQDEERGLGFPITQAELHKVNEKRQERN--LPPLDGSPGLLYFDYGKSKEGYWDNDKFEKQVQDLMFVLDVLHRGRQLVLEIDWSAGHAKMADDALSTNNTNAGFGGKQRKMRDTVVT 844
GG S R+ + Q CE H P+KC+C V+ IGQDES +KAY KEWVI G +RKKT+GPG MVS QDE G G PI+ A+L VN KR E PL SPGL + +YGK K+GYW D+FE+QV+D+M VL+ + Q+V E+D S+GH K +D L +N N +GGKQ+ +RD+V+T
Sbjct: 237 GGDYSVRFDQAAAAQ--CEHFHPPNKCRCGKKVHHIGQDESAYKAYAREGKEWVIRGVRGLRKKTEGPGEMVSGFQDERHGFGLPISDADLAAVNAKRDEEGNGKKPLTRSPGLRFLEYGKGKDGYWGYDQFEEQVEDVMDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRDSVMT 426
BLAST of mRNA_C-australica_Contig_1042.4.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE) HSP 1 Score: 189 bits (481), Expect = 5.000e-51 Identity = 117/328 (35.67%), Postives = 167/328 (50.91%), Query Frame = 2
Query: 2 HNRPDVVKYRGEYVARCERLGPRAPLWMQYE-----EEEWNRLNK------EGKMVKAVVHVIVTQGADGKV*KIYETHVDTWEKTDSRRGWNTQEGSVLMRGGRPSQRWKRGTLVQGVCEFDHAPDKCKCHLPVYWIGQDESVFKAYQLNAKEWVIGGTSKMRKKTDGPGLMVSAMQDEERGLGFPITQAELHKVNEKRQERN--LPPLDGSPGLLYFDYGKSKEGYWDNDKFEKQVQDLMFVLDVLHRGRQLVLEIDWSAG----------------------------------HAKMADDALSTNNTNAGFGGKQRKMRDTVVT 844
H + +VV+YRGEY+ + ++ R PLW++ + +EE +RL+ EG A V+ G D E HVD S ++ ++ GG S R+ + Q CE+ H +KC+C V+ IGQDES +KAY KEWVI G +RK+T+GPG MVS QDE G G PI+ A+L VN KR E L SPGL + +YGK K+G W D+FE+QV+D+M VL+ + +Q+V E+D S+G H K +D L +N N +GGKQ+ +RD+V+T
Sbjct: 426 HEKKEVVEYRGEYIEKRRKMALRQPLWVRVQRAALKQEEVDRLDSLKSRGPEGDFY-AEVYDCKIDGQD-----CIEFHVDLLRDDGSVDNFDKLRAALGPEGGDYSVRFDQAAAAQ--CEYFHPTNKCRCGKKVHHIGQDESAYKAYAREGKEWVIRGVRGLRKRTEGPGEMVSGFQDERHGFGLPISDADLAAVNAKRDEEGNGKKTLTRSPGLRFLEYGKGKDGCWGYDQFEEQVEDVMDVLEHIDPDKQIVFEVDHSSGPDAKPWTPVXXXXXXXXXXXXXXXXXXXXXXXXXHGKQREDGLHVSNMNVKYGGKQKVLRDSVMT 745
BLAST of mRNA_C-australica_Contig_1042.4.1 vs. uniprot
Match: A0A6H5KQB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB9_9PHAE) HSP 1 Score: 171 bits (434), Expect = 7.640e-46 Identity = 88/192 (45.83%), Postives = 117/192 (60.94%), Query Frame = 2
Query: 314 VQGVCEFDHAP-------------DKCKCHLPVYWIGQDESVFKAYQLNAKEWVIGGTSKMRKKTDGPGLMVSAMQDEERGLGFPITQAELHKVNEKRQERN--LPPLDGSPGLLYFDYGKSKEGYWDNDKFEKQVQDLMFVLDVLHRGRQLVLEIDWSAGHAKMADDALSTNNTNAGFGGKQRKMRDTVVT 844
+Q V E DH+ +KC+C V+ IGQDES +KAY KEWVI G +RKKT+GPG MVS QDE G G PI+ A+L VN KR E L SPGL + +YGK K+GYW D FE+QV+D++ VL+ + Q+V E+D S+GH K +D L +N N +GGKQ+ +RD+V+T
Sbjct: 80 MQIVFEVDHSSGHGKQREDGGAXSNKCRCGKKVHHIGQDESAYKAYAREGKEWVIRGVRGLRKKTEGPGEMVSGFQDERHGFGLPISDADLAAVNAKRDEEGNGKKTLTRSPGLRFLEYGKGKDGYWGYDLFEEQVEDVVDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRDSVMT 271
BLAST of mRNA_C-australica_Contig_1042.4.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE) HSP 1 Score: 167 bits (422), Expect = 4.440e-43 Identity = 85/190 (44.74%), Postives = 112/190 (58.95%), Query Frame = 2
Query: 275 GGRPSQRWKRGTLVQGVCEFDHAPDKCKCHLPVYWIGQDESVFKAYQLNAKEWVIGGTSKMRKKTDGPGLMVSAMQDEERGLGFPITQAELHKVNEKRQERNLPPLDGSPGLLYFDYGKSKEGYWDNDKFEKQVQDLMFVLDVLHRGRQLVLEIDWSAGHAKMADDALSTNNTNAGFGGKQRKMRDTVVT 844
GG S R++ + CE H P KCK + V IGQDESV+KAY KEWV+ G + KKT+GPG MVSA QDE G G P+T L VN +R+E+ L SPGL + YGK+K+GYW D+F++Q+ V Q+V+EID S+GH + +D L N N GGKQ +RDT++T
Sbjct: 473 GGHYSVRFEEAAALP--CEHFHTPAKCKGNKEVRHIGQDESVYKAYAREGKEWVVQGVPGLWKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLWFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKNGGKQTVLRDTIMT 660
BLAST of mRNA_C-australica_Contig_1042.4.1 vs. uniprot
Match: A0A6H5JUX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX8_9PHAE) HSP 1 Score: 157 bits (397), Expect = 6.080e-40 Identity = 74/155 (47.74%), Postives = 99/155 (63.87%), Query Frame = 2
Query: 380 IGQDESVFKAYQLNAKEWVIGGTSKMRKKTDGPGLMVSAMQDEERGLGFPITQAELHKVNEKRQERNLPPLDGSPGLLYFDYGKSKEGYWDNDKFEKQVQDLMFVLDVLHRGRQLVLEIDWSAGHAKMADDALSTNNTNAGFGGKQRKMRDTVVT 844
IGQDES++KAY KEWV+ G +RKKT+GPG MVSA QDE G G P+T L VN +R+E+ L SPGL + YGK+K+GYW D+F++Q+ V Q+V+EID S+GH + +D L N N +GGKQ+ +RDTV+T
Sbjct: 461 IGQDESLYKAYAREGKEWVVQGVRGLRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKYGGKQKVLRDTVMT 615
BLAST of mRNA_C-australica_Contig_1042.4.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE) HSP 1 Score: 152 bits (383), Expect = 7.850e-38 Identity = 79/185 (42.70%), Postives = 105/185 (56.76%), Query Frame = 2
Query: 197 ETHVDTWEKTDSRRGWNTQEGSVLMRGGRPSQRWKRGTLVQGVCEFDHAPDKCKCHLPVYWIGQDESVFKAYQLNAKEWVIGGTSKMRKKTDGPGLMVSAMQDEERGLGFPITQAELHKVNEKRQERNLPPLDGSPGLLYFDYGKSKEGYWDNDKFEKQVQDLMFVLDVLHRGRQLVLEIDWSAG 751
E HVD S ++ + + GG S R++ + CE H P KCKC+ V IGQDESV+KAY KEWV+ G +RKKT+GPG MVSA QDE G G P+T L VN +R+E+ L SPGL + YGK+K+GYW D+F++Q+ V Q+V+EID S+G
Sbjct: 520 EFHVDLLRDIGSVDRFDARRAKLGPEGGHYSVRFEEAAALP--CEHFHTPAKCKCNRKVRHIGQDESVYKAYAREGKEWVVQGVRGLRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSG 702
BLAST of mRNA_C-australica_Contig_1042.4.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE) HSP 1 Score: 145 bits (366), Expect = 1.370e-35 Identity = 93/270 (34.44%), Postives = 130/270 (48.15%), Query Frame = 2
Query: 2 HNRPDVVKYRGEYVARCERLGPRAPLWMQYEEE-----EWNRLNK---EGKMVKAVVHVIVTQGADGKV*KIYETHVDTWEKTDSRRGWNTQEGSVLMRGGRPSQRWKRGTLVQGVCEFDHAPDKCKCHLPVYWIGQDESVFKAYQLNAKEWVIGGTSK-------------------MRKKTDGPGLMVSAMQDEERGLGFPITQAELHKVNEKRQERNLPPLDGSPGLLYFDYGKSKEGYWDNDKFEKQVQDLMFVLDVLHRGRQLVL 730
H + DVV YRG+Y+ +L PLW++ + + E RL+ + A V+ V +G + E HVD S ++ + GG S R++ + CE H P KCKC+ V IGQDESV+KAY KEWV+ G +RKKT+GPG MVSA QDE G G P+T L VN +R+E+ L SPGL + YGK+K+GYW D+F++Q+ V Q+V+
Sbjct: 495 HEKKDVVVYRGKYIDVKRKLALWQPLWVRVQRDTLTPKELQRLDGIKGPAEDFCAEVYDCVVEGRE-----CIEFHVDLLRDNGSVDRFDDLRAELGPEGGHFSVRFEEAAALP--CEHFHTPAKCKCNRKVRHIGQDESVYKAYAREGKEWVVQGXXXXXXXXXXXXXXXXXXXVRGLRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVV 757
BLAST of mRNA_C-australica_Contig_1042.4.1 vs. uniprot
Match: A0A6H5L5X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X3_9PHAE) HSP 1 Score: 144 bits (362), Expect = 3.930e-35 Identity = 90/281 (32.03%), Postives = 138/281 (49.11%), Query Frame = 2
Query: 2 HNRPDVVKYRGEYVARCERLGPRAPLWMQYEEEEWNRLNKEGKMVKAVVHVIVTQGADGKV*KIYETHVDTWEKTDSRRGWNTQEGSVLMRGGRPSQRWKRGTLVQGVCEFDHAPDKCKCHLPVYWIGQDESVFKAYQLNAKEWVIGGTSKMRKKTDGPGLMVSAMQDEERGLGFPITQAELHKVNEKRQERNLPPLDGSPGLLYFDYGKSKEGYWDNDKFEKQVQDLMFVLDVLHRGRQLVLEIDWSAGHAKMADDALSTNNTNAGFGGKQRKMRDTVVT 844
H + DVV YRG+Y+ +L R PLW++ + + +E + + + GA+ +Y+ V+ E + LV+ D D + L G + F AY KEWV+ G +RKKT+GPG MV A QDE G G P+T L VN +R+E+ L P L + Y K+++GY D+F++Q++D++ VL+V Q+V+EID S+GH + +D L N N +GGKQ+ +RDTV+T
Sbjct: 321 HEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTP--EELQRLDGIKGPAEEFGAE-----VYDCVVEGRESIEFHVD-----------------------LVRDNDSVDRF-DALRAEL-----GPEGGHFSAYAREGKEWVVQGVRGLRKKTEGPGEMVPAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTQRPDLRFLQYWKNRDGYRGYDEFKEQIEDVLDVLNVFEPDMQVVVEIDHSSGHTRKREDGLHVGNMNVKYGGKQKVLRDTVIT 565 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1042.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1042.4.1 >prot_C-australica_Contig_1042.4.1 ID=prot_C-australica_Contig_1042.4.1|Name=mRNA_C-australica_Contig_1042.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=192bp MRGGRPSQRWKRGTLVQGVCEFDHAPDKCKCHLPVYWIGQDESVFKAYQLback to top mRNA from alignment at C-australica_Contig_1042:7214..8124- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1042.4.1 ID=mRNA_C-australica_Contig_1042.4.1|Name=mRNA_C-australica_Contig_1042.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=911bp|location=Sequence derived from alignment at C-australica_Contig_1042:7214..8124- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1042:7214..8124- >mRNA_C-australica_Contig_1042.4.1 ID=mRNA_C-australica_Contig_1042.4.1|Name=mRNA_C-australica_Contig_1042.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=576bp|location=Sequence derived from alignment at C-australica_Contig_1042:7214..8124- (Chrysoparadoxa australica CS_1217)back to top |