mRNA_C-australica_Contig_1042.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-australica_Contig_1042.3.1
Unique Name	mRNA_C-australica_Contig_1042.3.1
Type	mRNA
Organism	Chrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)

Homology

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BLAST of mRNA_C-australica_Contig_1042.3.1 vs. uniprot
Match: A0A6H5JCU7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU7_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.070e-29
Identity = 73/170 (42.94%), Postives = 92/170 (54.12%), Query Frame = 2

Query:   47 GQVQHLVYGADDPPPFY---ATTLDPVE--------YCGQAKGLKQILFERGLWDPQQPPTMG-----EMKKLLGRCPDFANEKCKLQNLLEESGHVLLMSPKYHPELAGVGIEYSWGQGKQYFRNHNTQEGGVKELRIKVEKALGPDM-LKLDLVRAYARRSRDYRRVY 505
            GQ Q   +    PPPF+   A   D           Y G+AKG++Q L+ERG W        G      ++K+L   PDF NE+  LQ+L+E  GH+LL SPK HPE+AGVGIEYSWG  K  FR     E   K L   +EK+L  D  L +  VR +ARR+RDY R Y
Sbjct:    2 GQAQTSTFAVGAPPPFFEWDAPRKDKKNAKGKVKEGYEGKAKGVRQYLWERGWWKDGMSTGAGVRDDMHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKPKFRRKIDDEV-PKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAY 170

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BLAST of mRNA_C-australica_Contig_1042.3.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.450e-28
Identity = 75/176 (42.61%), Postives = 95/176 (53.98%), Query Frame = 2

Query:   29 DVGVKAGQVQHLVYGADDPPPFY---ATTLDPVE--------YCGQAKGLKQILFERGLWDPQQPPTMG-----EMKKLLGRCPDFANEKCKLQNLLEESGHVLLMSPKYHPELAGVGIEYSWGQGKQYFRNHNTQEGGVKELRIKVEKALGPDM-LKLDLVRAYARRSRDYRRVY 505
            D  +  GQ Q   +    PPPF+   A   D           Y G+AKG++Q L+ERG W        G      ++K+L   PDF NE+  LQ+L+E  GH+LL SPK HPE+AGVGIEYSWG  KQ FR     E   K L   +EK+L  D  L +  VR +ARR+RDY R Y
Sbjct:  775 DQKLTVGQTQTSTFAVGAPPPFFEWDAPRKDKKNAKGKVKEGYEGKAKGVRQYLWERGWWKDGMSTGAGVSDDMHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKQKFRRKINDEV-PKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAY 949

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BLAST of mRNA_C-australica_Contig_1042.3.1 vs. uniprot
Match: A0A6H5JVH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH4_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 6.750e-28
Identity = 73/176 (41.48%), Postives = 94/176 (53.41%), Query Frame = 2

Query:   29 DVGVKAGQVQHLVYGADDPPPFY---ATTLDPVE--------YCGQAKGLKQILFERGLWDPQQPPTMG-----EMKKLLGRCPDFANEKCKLQNLLEESGHVLLMSPKYHPELAGVGIEYSWGQGKQYFRNHNTQEGGVKELRIKVEKALG-PDMLKLDLVRAYARRSRDYRRVY 505
            D  +  GQ Q   +    PPPF+   A   D           Y G+AKG++Q L+ERG W        G      ++K+L   PDF NE+  LQ+L+E  GH+LL SPK HPE+AGVGIEYSWG  KQ FR     E   K L   +E++L     L +  VR +ARR+RDY R Y
Sbjct:  166 DQKLTVGQTQTSTFAVCAPPPFFEWHAPRKDKKNAKGKVKEGYEGKAKGVRQYLWERGWWKDGMSTGAGVSDDMHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKQKFRRKINDEV-PKHLHDNIEESLCIHKYLTIGRVRRFARRTRDYCRAY 340

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BLAST of mRNA_C-australica_Contig_1042.3.1 vs. uniprot
Match: A0A6H5KLA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA1_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.970e-27
Identity = 65/134 (48.51%), Postives = 81/134 (60.45%), Query Frame = 2

Query:  122 YCGQAKGLKQILFERGLWDPQQPPTMG-----EMKKLLGRCPDFANEKCKLQNLLEESGHVLLMSPKYHPELAGVGIEYSWGQGKQYFRNHNTQEGGVKELRIKVEKALGPDM-LKLDLVRAYARRSRDYRRVY 505
            Y G+AKG++Q L+ERG W        G      + K+L   PDF  E+  LQ+L+E  GH+LL SPK HPE+AGVGIEYSWG  KQ FR  N  E   K L   +EK+L  D  L +  VR +ARR+RDY R Y
Sbjct:  199 YEGKAKGVRQYLWERGWWKDGMSTGAGVSDDMHVDKVLQALPDFKTERKALQHLVESRGHILLSSPKSHPEVAGVGIEYSWGFSKQKFRQKNNDEV-PKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAY 331

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BLAST of mRNA_C-australica_Contig_1042.3.1 vs. uniprot
Match: A0A6H5KQB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB9_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.420e-26
Identity = 65/134 (48.51%), Postives = 82/134 (61.19%), Query Frame = 2

Query:  122 YCGQAKGLKQILFERGLWDPQQPPTMG-----EMKKLLGRCPDFANEKCKLQNLLEESGHVLLMSPKYHPELAGVGIEYSWGQGKQYFRNHNTQEGGVKELRIKVEKALGPDM-LKLDLVRAYARRSRDYRRVY 505
            Y G+AKG++Q L+ERG W        G      ++K+L   PDF NE+  LQ+L+E  GH+LL SPK HPE+AGVGIEYSWG  KQ FR     E   K L   +EK+L  D  L +  VR +ARR+RDY R Y
Sbjct:  403 YEGKAKGVRQYLWERGWWKDGMSTGAGVSDDMHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKQKFRRRINDEV-PKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAY 535

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BLAST of mRNA_C-australica_Contig_1042.3.1 vs. uniprot
Match: A0A6H5K769_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K769_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.440e-25
Identity = 62/134 (46.27%), Postives = 82/134 (61.19%), Query Frame = 2

Query:  122 YCGQAKGLKQILFERGLWDPQQPPTMG-----EMKKLLGRCPDFANEKCKLQNLLEESGHVLLMSPKYHPELAGVGIEYSWGQGKQYFRNHNTQEGGVKELRIKVEKALGPDM-LKLDLVRAYARRSRDYRRVY 505
            Y G+AKG KQ L+ERG W      ++G      ++K+L    DF +E+  LQ L+E  GH+LL+SPK HPE+AGVGIEYSWG  KQ FR     E   K L   +EK++  +  L +  VR +ARR+RDY R Y
Sbjct:  212 YEGKAKGSKQYLWERGWWKEGMNASVGIADEKNVEKVLQALTDFESERTALQYLVESRGHILLLSPKCHPEVAGVGIEYSWGFSKQRFRRKYNDEV-PKHLHANIEKSMCREKHLTIGRVRRFARRTRDYCRAY 344

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BLAST of mRNA_C-australica_Contig_1042.3.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 8.230e-25
Identity = 62/133 (46.62%), Postives = 81/133 (60.90%), Query Frame = 2

Query:  122 YCGQAKGLKQILFERGLWDPQQPPTMG-----EMKKLLGRCPDFANEKCKLQNLLEESGHVLLMSPKYHPELAGVGIEYSWGQGKQYFRNHNTQEGGVKELRIKVEKALGPDMLKLDLVRAYARRSRDYRRVY 505
            Y G+AKG KQ L+ERG W      ++G      ++K+L    DF +E+  LQ L+E  GH+LL+SPK HPE+AGVGIEYSWG  KQ FR     E   K L   +EK++    L +  VR +ARR+RDY R Y
Sbjct:  808 YEGKAKGSKQYLWERGWWKEGMNASVGIADEKNVEKVLQALTDFESERTALQYLVESRGHILLLSPKCHPEVAGVGIEYSWGFSKQRFRRKYNDEV-PKHLHANIEKSMEKH-LTIGRVRRFARRTRDYCRAY 938

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BLAST of mRNA_C-australica_Contig_1042.3.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.810e-23
Identity = 60/132 (45.45%), Postives = 82/132 (62.12%), Query Frame = 2

Query:  128 GQAKGLKQILFERGLWDPQQPPTMG-----EMKKLLGRCPDFANEKCKLQNLLEESGHVLLMSPKYHPELAGVGIEYSWGQGKQYFRNHNTQEGGVKELRIKVEKALGPDM-LKLDLVRAYARRSRDYRRVY 505
            G+AKG KQ L+ERG W      ++G      ++K+L    +F +E+ +LQ L+E  GH+LL+SPK HPE+AGVGIEYSWG  KQ FR     E   K L   +EK++  +  L +  VR +ARR+RDY R Y
Sbjct:  864 GKAKGSKQYLWERGWWIEGMNASVGIADEKNIEKVLQALTNFESERTELQCLVESRGHILLLSPKCHPEVAGVGIEYSWGFSKQRFRRKYNDEV-PKHLHANIEKSMCREKHLMIGRVRRFARRTRDYCRAY 994

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BLAST of mRNA_C-australica_Contig_1042.3.1 vs. uniprot
Match: A0A6H5KJF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF8_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 4.340e-23
Identity = 58/137 (42.34%), Postives = 73/137 (53.28%), Query Frame = 2

Query:   29 DVGVKAGQVQHLVYGADDPPPFY---ATTLDPVE--------YCGQAKGLKQILFERGLWDPQQPPTMG-----EMKKLLGRCPDFANEKCKLQNLLEESGHVLLMSPKYHPELAGVGIEYSWGQGKQYFRNHNTQE 391
            D  +  GQ Q   +    PPPF+   A   D           Y G+AKG++Q L+ERG W        G      ++K+L   PDF NE+  LQ+L+E  GH+LL SPK HPE+AGVGIEYSWG  KQ FR     E
Sbjct:  192 DQKLTVGQTQTSTFAVGAPPPFFEWDAPRKDKKNAKGKVKEGYEGKAKGVRQYLWERGWWKDGMSTGAGVSDDMHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKQKFRRKINDE 328

[Close]

BLAST of mRNA_C-australica_Contig_1042.3.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 4.270e-21
Identity = 56/127 (44.09%), Postives = 76/127 (59.84%), Query Frame = 2

Query:  122 YCGQAKGLKQILFERGLWDPQQPPTMG-----EMKKLLGRCPDFANEKCKLQNLLEESGHVLLMSPKYHPELAGVGIEYSWGQGKQYFRNHNTQEGGVKELRIKVEKALGPDM-LKLDLVRAYARRS 484
            Y G+AK  KQ L+ERGLW      ++G      ++K+L    DF +E+  LQ L+E  GH+LL+SPK HPE+AGVGIEYSWG  KQ FR     E   K L   +EK++  +    +  VR +ARR+
Sbjct:  525 YEGKAKDSKQYLWERGLWKEGMNASVGISDEKNVEKVLQALTDFESERTALQYLVESRGHILLLSPKCHPEVAGVGIEYSWGFSKQRFRRKYNDEV-PKHLHANIEKSMSREKHFTIGRVRRFARRT 650

The following BLAST results are available for this feature:

BLAST of mRNA_C-australica_Contig_1042.3.1 vs. uniprot

BLAST of mRNA_C-australica_Contig_1042.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JCU7_9PHAE	1.070e-29	42.94	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L611_9PHAE	1.450e-28	42.61	Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVH4_9PHAE	6.750e-28	41.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KLA1_9PHAE	3.970e-27	48.51	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KQB9_9PHAE	1.420e-26	48.51	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K769_9PHAE	1.440e-25	46.27	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVN6_9PHAE	8.230e-25	46.62	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K7P7_9PHAE	1.810e-23	45.45	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJF8_9PHAE	4.340e-23	42.34	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRV8_9PHAE	4.270e-21	44.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-australica_Contig_1042	contig	C-australica_Contig_1042:6413..7113 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Chrysoparadoxa australica CS_1217 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	159749.K0RSF2
Model size	569
Max annot lvl	2759\|Eukaryota
Hectar predicted targeting category	other localisation
Exons	3
Evalue	1.25e-13
EggNOG OGs	2D06V@1\|root,2SD1E@2759\|Eukaryota
Cds size	363

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682586779.4769876-UTR-C-australica_Contig_1042:6412..6422	1682586779.4769876-UTR-C-australica_Contig_1042:6412..6422	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_1042 6413..6422 -
1682586779.5088859-UTR-C-australica_Contig_1042:6857..6902	1682586779.5088859-UTR-C-australica_Contig_1042:6857..6902	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_1042 6858..6902 -
1682586779.5183988-UTR-C-australica_Contig_1042:6962..7113	1682586779.5183988-UTR-C-australica_Contig_1042:6962..7113	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_1042 6963..7113 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682586779.4886942-CDS-C-australica_Contig_1042:6422..6641	1682586779.4886942-CDS-C-australica_Contig_1042:6422..6641	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1042 6423..6641 -
1682586779.4986277-CDS-C-australica_Contig_1042:6713..6857	1682586779.4986277-CDS-C-australica_Contig_1042:6713..6857	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_1042 6714..6857 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-australica_Contig_1042.3.1	prot_C-australica_Contig_1042.3.1	Chrysoparadoxa australica CS_1217	polypeptide	C-australica_Contig_1042 6423..6857 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-australica_Contig_1042:6413..7113-
coding sequence from alignment at C-australica_Contig_1042:6413..7113-

protein sequence of mRNA_C-australica_Contig_1042.3.1

>prot_C-australica_Contig_1042.3.1 ID=prot_C-australica_Contig_1042.3.1|Name=mRNA_C-australica_Contig_1042.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=121bp
MGEMKKLLGRCPDFANEKCKLQNLLEESGHVLLMSPKYHPELAGVGIEYS
WGQGKQYFRNHNTQEGGVKELRIKVEKALGPDMLKLDLVRAYARRSRDYR
RVYVMIPTVFWESERSSFFI*

mRNA from alignment at C-australica_Contig_1042:6413..7113-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-australica_Contig_1042.3.1 ID=mRNA_C-australica_Contig_1042.3.1|Name=mRNA_C-australica_Contig_1042.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=701bp|location=Sequence derived from alignment at C-australica_Contig_1042:6413..7113- (Chrysoparadoxa australica CS_1217)
GAGCAAAGACAAGAATGGCAACACACATGATGTAGGCGTGAAGGCAGGAC
AGGTGCAGCACCTAGTGTATGGAGCCGATGATCCTCCTCCTTTCTACGCC
ACAACCCTGGACCCGGTAGAGTACTGTGGTCAGGCAAAAGGGTTGAAGCA
GGTAAGAAGACAGACACGATGAGAGCTGTACACACCACTAATCCTAACGC
ACCTCCACCAGATCCTTTTCGAGAGAGGACTCTGGGATCCACAGCAGCCT
CCCACCATGGGTGAAATGAAGAAGCTCTTGGGCCGCTGCCCTGACTTCGC
CAATGAGAAGTGTAAGCTGCAGAATCTCCTGGAGGAAAGCGGTCATGTGC
TGCTCATGAGCCCCAAGTACCACCCTGAGCTTGCAGGAGTAGGGATTGAG
GTGTGTGTGCAGCAACTTGCAGTGGCTTATGATGCTCACCACATGCAATG
ATGTCCACTCTGCCCCTCTCAGTACTCCTGGGGACAGGGCAAACAGTACT
TCAGGAATCACAACACCCAAGAGGGGGGAGTTAAGGAACTGAGGATCAAG
GTGGAGAAGGCACTTGGCCCAGATATGCTGAAGCTGGATCTCGTAAGAGC
ATATGCGAGGCGGTCAAGGGACTACAGGCGTGTTTACGTAATGATACCGA
CAGTTTTTTGGGAATCTGAGAGGTCATCATTCTTCATTTAATACATCCGA
G

Coding sequence (CDS) from alignment at C-australica_Contig_1042:6413..7113-

>mRNA_C-australica_Contig_1042.3.1 ID=mRNA_C-australica_Contig_1042.3.1|Name=mRNA_C-australica_Contig_1042.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=363bp|location=Sequence derived from alignment at C-australica_Contig_1042:6413..7113- (Chrysoparadoxa australica CS_1217)
ATGGGTGAAATGAAGAAGCTCTTGGGCCGCTGCCCTGACTTCGCCAATGA
GAAGTGTAAGCTGCAGAATCTCCTGGAGGAAAGCGGTCATGTGCTGCTCA
TGAGCCCCAAGTACCACCCTGAGCTTGCAGGAGTAGGGATTGAGTACTCC
TGGGGACAGGGCAAACAGTACTTCAGGAATCACAACACCCAAGAGGGGGG
AGTTAAGGAACTGAGGATCAAGGTGGAGAAGGCACTTGGCCCAGATATGC
TGAAGCTGGATCTCGTAAGAGCATATGCGAGGCGGTCAAGGGACTACAGG
CGTGTTTACGTAATGATACCGACAGTTTTTTGGGAATCTGAGAGGTCATC
ATTCTTCATTTAA