mRNA_C-australica_Contig_10406.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10406.1.1
Unique NamemRNA_C-australica_Contig_10406.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10406.1.1 vs. uniprot
Match: A0A8J3KF09_9ACTN (Aminotransferase n=2 Tax=Catellatospora TaxID=53365 RepID=A0A8J3KF09_9ACTN)

HSP 1 Score: 61.2 bits (147), Expect = 1.170e-8
Identity = 34/88 (38.64%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   76 LAEASIEDADLGYQSPSGSELLRAAFLDAAERDGIALGTLGPQSVVTCSGGKQAMYLALHALV--RPGMRILLPQPGWVPYTLWVRSL 333
            L  A    +D GY  P+G   LRA +LD      +A G      V+   GGK+A +LA+  L+  RP   +L+PQPGW PY LW+ ++
Sbjct:   49 LGSAVARISDFGYADPAGDAGLRATYLDT-----LAEGRRDDLGVLVTGGGKEAAWLAIRYLLHQRPHGSVLVPQPGWEPYGLWLDAI 131          
BLAST of mRNA_C-australica_Contig_10406.1.1 vs. uniprot
Match: A0A7C1HWL9_9EURY (Pyridoxal phosphate-dependent aminotransferase n=1 Tax=Methanoculleus sp. TaxID=90427 RepID=A0A7C1HWL9_9EURY)

HSP 1 Score: 55.1 bits (131), Expect = 1.700e-6
Identity = 31/85 (36.47%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   67 AHLLAEA--SIEDADLGYQSPSGSELLRAAFLDAAERD-GIALGTLGPQSVVTCSGGKQAMYLALHALVRPGMRILLPQPGWVPY 312
            AH+   A  +I D   GY   +G   LR A ++   R+ G+   + GP+ V+  +GG + ++L + ALV PG R+L+P PG+V Y
Sbjct:   43 AHIKEAAVQAIRDGHTGYTPNAGIPELRNAIVEKFRRENGL---SFGPEQVLVTAGGSEGLHLVMEALVEPGDRVLVPDPGFVSY 124          
BLAST of mRNA_C-australica_Contig_10406.1.1 vs. uniprot
Match: UPI00137B2C34 (pyridoxal phosphate-dependent aminotransferase n=1 Tax=Deinococcus alpinitundrae TaxID=468913 RepID=UPI00137B2C34)

HSP 1 Score: 52.8 bits (125), Expect = 1.120e-5
Identity = 29/80 (36.25%), Postives = 44/80 (55.00%), Query Frame = 1
Query:   73 LLAEASIEDADLGYQSPSGSELLRAAFLDAAERDGIALGTLGPQSVVTCSGGKQAMYLALHALVRPGMRILLPQPGWVPY 312
            + A+A+++     Y + +G   LR A     +R+     T  P +V   SGGKQA++ AL AL+ PG  +L+P P WV Y
Sbjct:   56 MAAKAALDAGKTRYTAVNGIPELREAIAAKLQRENAL--TYPPDAVTVTSGGKQALFNALFALLDPGDEVLIPSPYWVSY 133          
BLAST of mRNA_C-australica_Contig_10406.1.1 vs. uniprot
Match: A0A523U5P6_9BACT (Aminotransferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523U5P6_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 1.120e-5
Identity = 36/107 (33.64%), Postives = 52/107 (48.60%), Query Frame = 1
Query:    4 ASSSSGGRGIDLCRGEVCLQLAHLL---AEASIEDADLGYQSPSGSELLRAAFLD-AAERDGIALGTLGPQSVVTCSGGKQAMYLALHALVRPGMRILLPQPGWVPY 312
            A  + G   I    GE      H +   AE +I      Y   +G   +RAA  +  ++R G +      + V+ C+G KQA++LAL A+V PG  +LLP P WV Y
Sbjct:   25 AMKAEGKDVISFSAGEPDFPTPHYIKHAAEEAIAANQTRYTPQAGMPDVRAAVAEHVSKRTGYSHAL---EEVIICAGAKQAVFLALQAVVEPGDEVLLPTPAWVSY 128          
BLAST of mRNA_C-australica_Contig_10406.1.1 vs. uniprot
Match: A0A101IRE3_9EURY (Aminotransferase n=3 Tax=Methanoculleus TaxID=45989 RepID=A0A101IRE3_9EURY)

HSP 1 Score: 50.4 bits (119), Expect = 7.150e-5
Identity = 27/80 (33.75%), Postives = 44/80 (55.00%), Query Frame = 1
Query:   73 LLAEASIEDADLGYQSPSGSELLRAAFLDAAERDGIALGTLGPQSVVTCSGGKQAMYLALHALVRPGMRILLPQPGWVPY 312
            + A A+I +   GY   +G   LR A      R+     T  P+ ++  +GG +A++L + ALV PG R+L+P PG++ Y
Sbjct:   47 MAAIAAIREGRTGYTPNAGIPELREAICGKFARENNL--TYLPEQILVTAGGSEALHLVMEALVNPGDRVLVPDPGFLSY 124          
BLAST of mRNA_C-australica_Contig_10406.1.1 vs. uniprot
Match: A0A072NFE5_9DEIO (Aminotransferase n=3 Tax=Deinococcus TaxID=1298 RepID=A0A072NFE5_9DEIO)

HSP 1 Score: 50.1 bits (118), Expect = 9.870e-5
Identity = 31/77 (40.26%), Postives = 40/77 (51.95%), Query Frame = 1
Query:   85 ASIEDADLGYQSPSG-SELLRAAFLDAAERDGIALGTLGPQSVVTCSGGKQAMYLALHALVRPGMRILLPQPGWVPY 312
            A+IE     Y   SG  EL  A     A  +G+      P +V   SGGKQA++ AL AL+ PG  +L+P P WV Y
Sbjct:   58 AAIEAGHTRYTPVSGLPELREAVSAKFARENGL---EYPPDAVTVTSGGKQALFNALFALLDPGDEVLIPAPSWVSY 131          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10406.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A8J3KF09_9ACTN1.170e-838.64Aminotransferase n=2 Tax=Catellatospora TaxID=5336... [more]
A0A7C1HWL9_9EURY1.700e-636.47Pyridoxal phosphate-dependent aminotransferase n=1... [more]
UPI00137B2C341.120e-536.25pyridoxal phosphate-dependent aminotransferase n=1... [more]
A0A523U5P6_9BACT1.120e-533.64Aminotransferase n=1 Tax=Planctomycetes bacterium ... [more]
A0A101IRE3_9EURY7.150e-533.75Aminotransferase n=3 Tax=Methanoculleus TaxID=4598... [more]
A0A072NFE5_9DEIO9.870e-540.26Aminotransferase n=3 Tax=Deinococcus TaxID=1298 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10406contigC-australica_Contig_10406:4..336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog195105.CN97_16825
PFAMsAminotran_1_2
Model size333
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00006
KEGG koko:K00812
KEGG ReactionR00355,R00694,R00734,R00896,R02433,R02619,R05052
KEGG Pathwayko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.03e-08
EggNOG OGsCOG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,2TTWX@28211|Alphaproteobacteria
EC2.6.1.1
DescriptionDegT/DnrJ/EryC1/StrS aminotransferase family
Cds size333
COG categoryE
BRITEko00000,ko00001,ko01000,ko01007
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586778.5480528-CDS-C-australica_Contig_10406:3..3361682586778.5480528-CDS-C-australica_Contig_10406:3..336Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10406 4..336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10406.1.1prot_C-australica_Contig_10406.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10406 4..336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10406.1.1

>prot_C-australica_Contig_10406.1.1 ID=prot_C-australica_Contig_10406.1.1|Name=mRNA_C-australica_Contig_10406.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=111bp
VASSSSGGRGIDLCRGEVCLQLAHLLAEASIEDADLGYQSPSGSELLRAA
FLDAAERDGIALGTLGPQSVVTCSGGKQAMYLALHALVRPGMRILLPQPG
WVPYTLWVRSL
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mRNA from alignment at C-australica_Contig_10406:4..336-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10406.1.1 ID=mRNA_C-australica_Contig_10406.1.1|Name=mRNA_C-australica_Contig_10406.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=333bp|location=Sequence derived from alignment at C-australica_Contig_10406:4..336- (Chrysoparadoxa australica CS_1217)
GTCGCGTCATCATCCTCGGGCGGACGGGGAATCGACCTGTGTCGTGGTGA AGTTTGCCTTCAGCTTGCCCATCTGCTGGCCGAGGCTTCCATTGAGGACG CAGACCTTGGCTACCAGTCTCCTTCGGGTAGTGAGCTTTTGAGAGCTGCC TTTCTTGATGCAGCAGAACGCGATGGTATCGCGCTTGGCACATTGGGGCC TCAGTCAGTCGTGACTTGCTCTGGGGGTAAGCAAGCCATGTATTTGGCCC TCCACGCGCTTGTTCGTCCGGGAATGCGTATTCTTCTGCCGCAACCGGGG TGGGTTCCATATACACTTTGGGTGCGCAGCCTC
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Coding sequence (CDS) from alignment at C-australica_Contig_10406:4..336-

>mRNA_C-australica_Contig_10406.1.1 ID=mRNA_C-australica_Contig_10406.1.1|Name=mRNA_C-australica_Contig_10406.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=333bp|location=Sequence derived from alignment at C-australica_Contig_10406:4..336- (Chrysoparadoxa australica CS_1217)
GTCGCGTCATCATCCTCGGGCGGACGGGGAATCGACCTGTGTCGTGGTGA
AGTTTGCCTTCAGCTTGCCCATCTGCTGGCCGAGGCTTCCATTGAGGACG
CAGACCTTGGCTACCAGTCTCCTTCGGGTAGTGAGCTTTTGAGAGCTGCC
TTTCTTGATGCAGCAGAACGCGATGGTATCGCGCTTGGCACATTGGGGCC
TCAGTCAGTCGTGACTTGCTCTGGGGGTAAGCAAGCCATGTATTTGGCCC
TCCACGCGCTTGTTCGTCCGGGAATGCGTATTCTTCTGCCGCAACCGGGG
TGGGTTCCATATACACTTTGGGTGCGCAGCCTC
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