mRNA_C-australica_Contig_10403.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10403.1.1
Unique NamemRNA_C-australica_Contig_10403.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10403.1.1 vs. uniprot
Match: A0A222DYM7_9RHOB (Dimethylsulfoniopropionate demethylase n=5 Tax=Rhodobacterales TaxID=204455 RepID=A0A222DYM7_9RHOB)

HSP 1 Score: 537 bits (1383), Expect = 7.190e-185
Identity = 262/274 (95.62%), Postives = 267/274 (97.45%), Query Frame = 1
Query:    1 PAGRMAKTTPLTPILQNEGAHFGPVNGWERAEVFAPGLHITPSYRFDEAHDAVAAEVTAVHTAVGLCEVNGFNRLEITGADRHAFLDRLCCGRVTKKGGRVGLGYLLNDHGMIKAEATFANLPASDRGPARVWYGSAAASEFHDMDWLMAHKRAEEDVQIRSLTNDLTILVLAGPKARDVLVATSRGDWSAQGFPWLSARECFIGFAPATVLSVSFSGELAYEIHVPNASLYAAYTALREAGDKHGLRLFGSHAVDSMRLEKGFLDWKAYLLTE 822
            PAGRMAKTTPLTPILQNEGAHFGPVNGWERAEVFAPGLHITPS+RFDEAHDAVAAEV AVHTAVGLCEVNGFNRLEITG DRHAFLDRLCCGRVTKK GRVGLGYLLNDHGMIKAEATFANLPASDRGPARVWYGSAAASEFHDMDWLMAHKRA+EDVQIRSLTNDLTILVLAGPKAR+VL ATSRG+WSAQGFPWLS RECFIGFAPATVLSVSFSGELAYEIHVPNASL+AAYTALREAGDKHGLRLFGSHAVDSMRLEKGFL WKA LLTE
Sbjct:  414 PAGRMAKTTPLTPILQNEGAHFGPVNGWERAEVFAPGLHITPSFRFDEAHDAVAAEVGAVHTAVGLCEVNGFNRLEITGVDRHAFLDRLCCGRVTKKDGRVGLGYLLNDHGMIKAEATFANLPASDRGPARVWYGSAAASEFHDMDWLMAHKRADEDVQIRSLTNDLTILVLAGPKAREVLSATSRGNWSAQGFPWLSTRECFIGFAPATVLSVSFSGELAYEIHVPNASLFAAYTALREAGDKHGLRLFGSHAVDSMRLEKGFLHWKADLLTE 687          
BLAST of mRNA_C-australica_Contig_10403.1.1 vs. uniprot
Match: A0A239DQ84_9RHOB (Dimethylglycine dehydrogenase n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239DQ84_9RHOB)

HSP 1 Score: 514 bits (1324), Expect = 5.950e-176
Identity = 252/275 (91.64%), Postives = 258/275 (93.82%), Query Frame = 1
Query:    1 PAGRMAKTTPLTPILQNEGAHFGPVNGWERAEVFAP-GLHITPSYRFDEAHDAVAAEVTAVHTAVGLCEVNGFNRLEITGADRHAFLDRLCCGRVTKKGGRVGLGYLLNDHGMIKAEATFANLPASDRGPARVWYGSAAASEFHDMDWLMAHKRAEEDVQIRSLTNDLTILVLAGPKARDVLVATSRGDWSAQGFPWLSARECFIGFAPATVLSVSFSGELAYEIHVPNASLYAAYTALREAGDKHGLRLFGSHAVDSMRLEKGFLDWKAYLLTE 822
            PAGRMAKTTPLTPILQ EGAHFGPVNGWERAE FAP GL +TPSYRFDEAH  +  EV AVHTAVGLCEVNGFNRLEITG DRHAFLDRLCCGRVTKK GRVGLGYLLNDHGM+KAEATFANLPASDRGPARVWYGSAAASEFHDMDWLMAHKRAEEDVQIRSLTND TILVLAGPKARDVL   SRGDWSAQGFPWLSARECFIGFAPATVL+VSFSGELAYEIHVPNASLYAAY+ALREAGDKHGLRLFGSHAV+SMRLEKGFL WKA LLTE
Sbjct:  414 PAGRMAKTTPLTPILQTEGAHFGPVNGWERAEFFAPDGLTVTPSYRFDEAHALIGEEVNAVHTAVGLCEVNGFNRLEITGTDRHAFLDRLCCGRVTKKDGRVGLGYLLNDHGMVKAEATFANLPASDRGPARVWYGSAAASEFHDMDWLMAHKRAEEDVQIRSLTNDQTILVLAGPKARDVLSQVSRGDWSAQGFPWLSARECFIGFAPATVLAVSFSGELAYEIHVPNASLYAAYSALREAGDKHGLRLFGSHAVESMRLEKGFLHWKADLLTE 688          
BLAST of mRNA_C-australica_Contig_10403.1.1 vs. uniprot
Match: A0A238K6Y0_9RHOB (4-methylaminobutanoate oxidase (Formaldehyde-forming) n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238K6Y0_9RHOB)

HSP 1 Score: 467 bits (1201), Expect = 2.010e-157
Identity = 229/275 (83.27%), Postives = 246/275 (89.45%), Query Frame = 1
Query:    1 PAGRMAKTTPLTPILQNEGAHFGPVNGWERAEVFAP-GLHITPSYRFDEAHDAVAAEVTAVHTAVGLCEVNGFNRLEITGADRHAFLDRLCCGRVTKKGGRVGLGYLLNDHGMIKAEATFANLPASDRGPARVWYGSAAASEFHDMDWLMAHKRAEEDVQIRSLTNDLTILVLAGPKARDVLVATSRGDWSAQGFPWLSARECFIGFAPATVLSVSFSGELAYEIHVPNASLYAAYTALREAGDKHGLRLFGSHAVDSMRLEKGFLDWKAYLLTE 822
            PAGRMA+TTPLTP+L+ EGAHF P+NGWERAEVFAP GLH+TPS+RFDEAH  V  EV AVHTAVGL EVNGFNRLEITGADRHAFLDRLCCGRVTK+ GRVGLGYLLNDHGMIKAEATFANLPASDRGPARVWYGSAAASE HD DWL+ H+R  E VQIRSLT+D+TILVLAGP+AR VL   +RGDWSAQ FPWLS RECF+G+APATVLSVSFSGELAYEIHVP  SLYAAYTALREAG  HGLRLFGSHAV+SMRLEK FL WKA L+TE
Sbjct:  414 PAGRMARTTPLTPVLRAEGAHFTPINGWERAEVFAPAGLHVTPSFRFDEAHALVGQEVQAVHTAVGLAEVNGFNRLEITGADRHAFLDRLCCGRVTKRVGRVGLGYLLNDHGMIKAEATFANLPASDRGPARVWYGSAAASEQHDRDWLLMHRRPGEYVQIRSLTDDMTILVLAGPRARAVLSEVARGDWSAQVFPWLSVRECFVGYAPATVLSVSFSGELAYEIHVPTPSLYAAYTALREAGAAHGLRLFGSHAVESMRLEKSFLHWKADLVTE 688          
BLAST of mRNA_C-australica_Contig_10403.1.1 vs. uniprot
Match: UPI001C5DD2ED (FAD-dependent oxidoreductase n=1 Tax=Mameliella sp. CS4 TaxID=2862329 RepID=UPI001C5DD2ED)

HSP 1 Score: 444 bits (1141), Expect = 2.040e-148
Identity = 214/274 (78.10%), Postives = 239/274 (87.23%), Query Frame = 1
Query:    1 PAGRMAKTTPLTPILQNEGAHFGPVNGWERAEVFAPGLHITPSYRFDEAHDAVAAEVTAVHTAVGLCEVNGFNRLEITGADRHAFLDRLCCGRVTKKGGRVGLGYLLNDHGMIKAEATFANLPASDRGPARVWYGSAAASEFHDMDWLMAHKRAEEDVQIRSLTNDLTILVLAGPKARDVLVATSRGDWSAQGFPWLSARECFIGFAPATVLSVSFSGELAYEIHVPNASLYAAYTALREAGDKHGLRLFGSHAVDSMRLEKGFLDWKAYLLTE 822
            PAGRMA+TTPLTPIL  EGAHF PVNGWERAEVFAPG+ +TPS+RFDE H  VAAEV AVH+AVGL EVNGFNR+EITG D HAFLDRL C RV  + GRVGLGYLLN  G IK+EATF NLPASDRGP RVWYGSAAASE HD+DWL+AH+  +EDVQIRSLT+D+TILVLAGP++R VL   +RGDWSA  FPWLSAREC+IG+APATVLSVSFSGELAYEIHVPNASL+AA++ALREAG  HGLRLFGSHA++SMRLEK FL WK+ LLTE
Sbjct:  414 PAGRMARTTPLTPILATEGAHFAPVNGWERAEVFAPGVTVTPSFRFDETHAHVAAEVAAVHSAVGLTEVNGFNRIEITGVDCHAFLDRLSCSRVPTRAGRVGLGYLLNHQGCIKSEATFTNLPASDRGPERVWYGSAAASERHDLDWLLAHRHPDEDVQIRSLTHDMTILVLAGPESRAVLSEAARGDWSAAAFPWLSARECYIGYAPATVLSVSFSGELAYEIHVPNASLFAAFSALREAGAAHGLRLFGSHAIESMRLEKSFLHWKSDLLTE 687          
BLAST of mRNA_C-australica_Contig_10403.1.1 vs. uniprot
Match: A0A0B3SX73_9RHOB (FAD dependent oxidoreductase/aminomethyl transferase n=6 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3SX73_9RHOB)

HSP 1 Score: 440 bits (1132), Expect = 4.590e-147
Identity = 213/274 (77.74%), Postives = 232/274 (84.67%), Query Frame = 1
Query:    1 PAGRMAKTTPLTPILQNEGAHFGPVNGWERAEVFAPGLHITPSYRFDEAHDAVAAEVTAVHTAVGLCEVNGFNRLEITGADRHAFLDRLCCGRVTKKGGRVGLGYLLNDHGMIKAEATFANLPASDRGPARVWYGSAAASEFHDMDWLMAHKRAEEDVQIRSLTNDLTILVLAGPKARDVLVATSRGDWSAQGFPWLSARECFIGFAPATVLSVSFSGELAYEIHVPNASLYAAYTALREAGDKHGLRLFGSHAVDSMRLEKGFLDWKAYLLTE 822
            PAGRMA+TTPLTPIL+ EGAHF PVNGWERAEVFAP L ITPS+RFDE H  VA EV AVHT VGL E+NGFNR+EITG DRHAFLDRLCCGRV ++ G VGLGYLLNDHG IKAEATFANLPASDRG  RVWYGSAAASE HD DWL  H R  EDVQ+ SLT D+TILVLAGP AR +L   +RGDWS+ GFPWLS RECFIG+APATVLSVSFSGELAYE+HVPNASL AAYT L+EAG   G+RLFGSHA++SMRLEK FL WK+ LLTE
Sbjct:  414 PAGRMARTTPLTPILRAEGAHFAPVNGWERAEVFAPDLQITPSFRFDETHATVAEEVQAVHTRVGLAEINGFNRIEITGRDRHAFLDRLCCGRVPRQAGCVGLGYLLNDHGCIKAEATFANLPASDRGTDRVWYGSAAASERHDHDWLAGHMRPGEDVQLHSLTQDMTILVLAGPGARAILSKVARGDWSSSGFPWLSVRECFIGYAPATVLSVSFSGELAYEVHVPNASLLAAYTTLQEAGTAQGMRLFGSHAIESMRLEKSFLHWKSDLLTE 687          
BLAST of mRNA_C-australica_Contig_10403.1.1 vs. uniprot
Match: UPI00067E1563 (FAD-dependent oxidoreductase n=1 Tax=Pseudorhodobacter wandonensis TaxID=1120568 RepID=UPI00067E1563)

HSP 1 Score: 431 bits (1107), Expect = 2.810e-143
Identity = 215/276 (77.90%), Postives = 228/276 (82.61%), Query Frame = 1
Query:    1 PAGRMAKTTPLTPILQNEGAHFGPVNGWERAEVF--APGLHITPSYRFDEAHDAVAAEVTAVHTAVGLCEVNGFNRLEITGADRHAFLDRLCCGRVTKKGGRVGLGYLLNDHGMIKAEATFANLPASDRGPARVWYGSAAASEFHDMDWLMAHKRAEEDVQIRSLTNDLTILVLAGPKARDVLVATSRGDWSAQGFPWLSARECFIGFAPATVLSVSFSGELAYEIHVPNASLYAAYTALREAGDKHGLRLFGSHAVDSMRLEKGFLDWKAYLLTE 822
            PAGR AKTTPLTP+L  EGA F  VNGWER +    +P  H T  + FDEA D VAAEV AV T VGLCEVNGFNR+EITGADRH FLDR+ CG+VTK+ GRVGLGYLLN HGMIK EAT AN+PASDRGP RVWYGSAAASE HDMDWL AH   EEDVQ+RSLTND TILVLAGPKARDVL A SRGDWS   FPWLS RECFIGFAPATVL VSFSGELAYEIHVPNASLYAAY ALR+AG  HGLRLFG+ AVDSMR+EKGFL WKA LLTE
Sbjct:  414 PAGRPAKTTPLTPVLAAEGAEFTVVNGWERVDYIKPSPDFHPTLGFNFDEAFDLVAAEVNAVQTGVGLCEVNGFNRIEITGADRHKFLDRMFCGQVTKRAGRVGLGYLLNHHGMIKGEATIANIPASDRGPDRVWYGSAAASELHDMDWLKAHLTPEEDVQLRSLTNDQTILVLAGPKARDVLSACSRGDWSKVAFPWLSLRECFIGFAPATVLGVSFSGELAYEIHVPNASLYAAYLALRQAGAAHGLRLFGARAVDSMRMEKGFLHWKADLLTE 689          
BLAST of mRNA_C-australica_Contig_10403.1.1 vs. uniprot
Match: M9RLM6_9RHOB (Dimethylglycine dehydrogenase5 n=1 Tax=Octadecabacter arcticus 238 TaxID=391616 RepID=M9RLM6_9RHOB)

HSP 1 Score: 430 bits (1105), Expect = 5.320e-143
Identity = 209/276 (75.72%), Postives = 232/276 (84.06%), Query Frame = 1
Query:    1 PAGRMAKTTPLTPILQNEGAHFGPVNGWERAEVFAPG--LHITPSYRFDEAHDAVAAEVTAVHTAVGLCEVNGFNRLEITGADRHAFLDRLCCGRVTKKGGRVGLGYLLNDHGMIKAEATFANLPASDRGPARVWYGSAAASEFHDMDWLMAHKRAEEDVQIRSLTNDLTILVLAGPKARDVLVATSRGDWSAQGFPWLSARECFIGFAPATVLSVSFSGELAYEIHVPNASLYAAYTALREAGDKHGLRLFGSHAVDSMRLEKGFLDWKAYLLTE 822
            PAGR AKTTPLTPI + EGA F  VNGWER E   P    H+T  ++FDE++  VA EV AV   VG+CEVNGFNR EITG DRH+FLDR+ CGRVTKK GRVGLGYLLNDHGM+KAEAT ANLPA+DRGPARVWYGSAAA+EFHDMDWL  H  A E+VQI+SLTND TILV+AGPKARDV+ A SR DWS + FPWLSARECFIGFAPATVL VSFSGELAYEIHVPNASLYAAYTALREAG+ HG+++FG+ AVDSMRLEKGFL WKA +LTE
Sbjct:  414 PAGRGAKTTPLTPIFKAEGAEFAVVNGWERVEYMKPDSDFHVTYGFKFDESYPLVAHEVAAVQNGVGICEVNGFNRFEITGEDRHSFLDRMICGRVTKKDGRVGLGYLLNDHGMLKAEATVANLPATDRGPARVWYGSAAAAEFHDMDWLQMHIGANEEVQIKSLTNDQTILVIAGPKARDVISAVSRDDWSKEAFPWLSARECFIGFAPATVLGVSFSGELAYEIHVPNASLYAAYTALREAGEAHGMKIFGALAVDSMRLEKGFLHWKADILTE 689          
BLAST of mRNA_C-australica_Contig_10403.1.1 vs. uniprot
Match: A0A0J5QCM6_9RHOB (Glycine cleavage system T protein (Aminomethyltransferase) n=11 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0J5QCM6_9RHOB)

HSP 1 Score: 427 bits (1099), Expect = 4.460e-142
Identity = 213/276 (77.17%), Postives = 227/276 (82.25%), Query Frame = 1
Query:    1 PAGRMAKTTPLTPILQNEGAHFGPVNGWERAEVF--APGLHITPSYRFDEAHDAVAAEVTAVHTAVGLCEVNGFNRLEITGADRHAFLDRLCCGRVTKKGGRVGLGYLLNDHGMIKAEATFANLPASDRGPARVWYGSAAASEFHDMDWLMAHKRAEEDVQIRSLTNDLTILVLAGPKARDVLVATSRGDWSAQGFPWLSARECFIGFAPATVLSVSFSGELAYEIHVPNASLYAAYTALREAGDKHGLRLFGSHAVDSMRLEKGFLDWKAYLLTE 822
            PAGR AKTTPLTPIL  EGA F  VNGWER +     PG H T ++ FDEA D VAAEV  V   VGLCEVNGFNR EITGADRHAFLDR+ CG VTK+ GRVGLGYLLN HGMIK EAT ANLPASDRGPAR WYGSAAASE+HDMDWL  H RA+EDV IRSLTND TILVLAGPKARDVL A +RGDW    FPWLS RECFIGFAPATVL VSFSGELAYEIHVPNASLYAAY ALR+AG+ HGL+LFG+ AVDSMR+EKGFL WKA L+TE
Sbjct:  414 PAGRPAKTTPLTPILAAEGAEFTVVNGWERVDYIKPTPGFHPTLTFNFDEAFDVVAAEVKNVQENVGLCEVNGFNRFEITGADRHAFLDRMFCGAVTKRDGRVGLGYLLNHHGMIKGEATVANLPASDRGPARAWYGSAAASEYHDMDWLQMHLRADEDVHIRSLTNDQTILVLAGPKARDVLSACARGDWLKAAFPWLSVRECFIGFAPATVLGVSFSGELAYEIHVPNASLYAAYLALRKAGETHGLKLFGARAVDSMRMEKGFLHWKADLITE 689          
BLAST of mRNA_C-australica_Contig_10403.1.1 vs. uniprot
Match: A4EIP0_9RHOB (FAD dependent oxidoreductase/aminomethyl transferase n=1 Tax=Roseobacter sp. CCS2 TaxID=391593 RepID=A4EIP0_9RHOB)

HSP 1 Score: 427 bits (1099), Expect = 4.460e-142
Identity = 212/276 (76.81%), Postives = 227/276 (82.25%), Query Frame = 1
Query:    1 PAGRMAKTTPLTPILQNEGAHFGPVNGWERAEVF--APGLHITPSYRFDEAHDAVAAEVTAVHTAVGLCEVNGFNRLEITGADRHAFLDRLCCGRVTKKGGRVGLGYLLNDHGMIKAEATFANLPASDRGPARVWYGSAAASEFHDMDWLMAHKRAEEDVQIRSLTNDLTILVLAGPKARDVLVATSRGDWSAQGFPWLSARECFIGFAPATVLSVSFSGELAYEIHVPNASLYAAYTALREAGDKHGLRLFGSHAVDSMRLEKGFLDWKAYLLTE 822
            PAGR AKTTPLTPIL  EGA F  VNGWER +    AP  H    + FDE+ D +AAEV  V   VGLCEVNGFNR EITGADRH FLDR+ CG VTK+ GRVGLGYLLNDHGMIK EAT ANLPASDRGPARVWYGSAAASE+HDMDWL AH  A+EDVQI+SLTND TILVLAGPK+RDVL A SRGDWS + FPWLS RECFIGFAPATVL VSFSGELAYEIHVPNASLYA Y ALREAG  HGLRLFG+ AVD+MR+EKGFL WKA L+TE
Sbjct:  414 PAGRPAKTTPLTPILAAEGAEFTVVNGWERMDYIKPAPDFHPALDFHFDESFDVIAAEVRNVQENVGLCEVNGFNRFEITGADRHQFLDRMFCGAVTKRDGRVGLGYLLNDHGMIKGEATIANLPASDRGPARVWYGSAAASEYHDMDWLKAHVAADEDVQIKSLTNDQTILVLAGPKSRDVLQAVSRGDWSKEAFPWLSVRECFIGFAPATVLGVSFSGELAYEIHVPNASLYAVYLALREAGKDHGLRLFGARAVDAMRMEKGFLHWKADLITE 689          
BLAST of mRNA_C-australica_Contig_10403.1.1 vs. uniprot
Match: UPI001ADEC69D (FAD-dependent oxidoreductase n=1 Tax=Cognatishimia activa TaxID=1715691 RepID=UPI001ADEC69D)

HSP 1 Score: 424 bits (1090), Expect = 9.970e-141
Identity = 208/276 (75.36%), Postives = 230/276 (83.33%), Query Frame = 1
Query:    1 PAGRMAKTTPLTPILQNEGAHFGPVNGWERAEVF--APGLHITPSYRFDEAHDAVAAEVTAVHTAVGLCEVNGFNRLEITGADRHAFLDRLCCGRVTKKGGRVGLGYLLNDHGMIKAEATFANLPASDRGPARVWYGSAAASEFHDMDWLMAHKRAEEDVQIRSLTNDLTILVLAGPKARDVLVATSRGDWSAQGFPWLSARECFIGFAPATVLSVSFSGELAYEIHVPNASLYAAYTALREAGDKHGLRLFGSHAVDSMRLEKGFLDWKAYLLTE 822
            PAGR AKTTPLTPIL  EGA F  VNGWERAE F   P  H + S+ FDEA D VA EVTAV T VGL EVNGFNR+EITG DRHAFLDR+ CG VTK+ GRVGLGYLLN HGM+KAEAT AN+PASDRGP RVWYGSAAA+EFHDMDWL +H   +EDVQ++SLTND TILVLAGPKARDV+   SRGDWS + FPWLSARECFIGFAPATV+ VSFSGELAYEIHVPNASLYAAY ALR AG+ HG+ LFG+ AV+SMR+EKGFL WK+ L+TE
Sbjct:  414 PAGRPAKTTPLTPILAAEGAEFTVVNGWERAEYFKPTPDFHPSLSFHFDEAFDVVAKEVTAVQTGVGLAEVNGFNRIEITGKDRHAFLDRMFCGAVTKRDGRVGLGYLLNHHGMVKAEATVANIPASDRGPDRVWYGSAAAAEFHDMDWLTSHLHDDEDVQLKSLTNDQTILVLAGPKARDVMSEVSRGDWSKEAFPWLSARECFIGFAPATVMGVSFSGELAYEIHVPNASLYAAYLALRAAGEAHGMTLFGARAVESMRMEKGFLHWKSDLITE 689          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10403.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222DYM7_9RHOB7.190e-18595.62Dimethylsulfoniopropionate demethylase n=5 Tax=Rho... [more]
A0A239DQ84_9RHOB5.950e-17691.64Dimethylglycine dehydrogenase n=1 Tax=Antarctobact... [more]
A0A238K6Y0_9RHOB2.010e-15783.274-methylaminobutanoate oxidase (Formaldehyde-formi... [more]
UPI001C5DD2ED2.040e-14878.10FAD-dependent oxidoreductase n=1 Tax=Mameliella sp... [more]
A0A0B3SX73_9RHOB4.590e-14777.74FAD dependent oxidoreductase/aminomethyl transfera... [more]
UPI00067E15632.810e-14377.90FAD-dependent oxidoreductase n=1 Tax=Pseudorhodoba... [more]
M9RLM6_9RHOB5.320e-14375.72Dimethylglycine dehydrogenase5 n=1 Tax=Octadecabac... [more]
A0A0J5QCM6_9RHOB4.460e-14277.17Glycine cleavage system T protein (Aminomethyltran... [more]
A4EIP0_9RHOB4.460e-14276.81FAD dependent oxidoreductase/aminomethyl transfera... [more]
UPI001ADEC69D9.970e-14175.36FAD-dependent oxidoreductase n=1 Tax=Cognatishimia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10403contigC-australica_Contig_10403:1..822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog391616.OA238_c34950
Preferred namedmgdh5
PFAMsDAO,FAO_M,GCV_T,GCV_T_C
Model size822
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00181
KEGG koko:K00315
KEGG ReactionR01565
KEGG Pathwayko00260,ko01100,map00260,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.64e-141
EggNOG OGsCOG0404@1|root,COG0665@1|root,COG0404@2|Bacteria,COG0665@2|Bacteria,1MUXJ@1224|Proteobacteria,2TUTB@28211|Alphaproteobacteria
EC1.5.8.4
DescriptionBelongs to the GcvT family
Cds size810
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586778.471086-UTR-C-australica_Contig_10403:0..121682586778.471086-UTR-C-australica_Contig_10403:0..12Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10403 1..12 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586778.483458-CDS-C-australica_Contig_10403:12..8221682586778.483458-CDS-C-australica_Contig_10403:12..822Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10403 13..822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10403.1.1prot_C-australica_Contig_10403.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10403 13..822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10403.1.1

>prot_C-australica_Contig_10403.1.1 ID=prot_C-australica_Contig_10403.1.1|Name=mRNA_C-australica_Contig_10403.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=270bp
MAKTTPLTPILQNEGAHFGPVNGWERAEVFAPGLHITPSYRFDEAHDAVA
AEVTAVHTAVGLCEVNGFNRLEITGADRHAFLDRLCCGRVTKKGGRVGLG
YLLNDHGMIKAEATFANLPASDRGPARVWYGSAAASEFHDMDWLMAHKRA
EEDVQIRSLTNDLTILVLAGPKARDVLVATSRGDWSAQGFPWLSARECFI
GFAPATVLSVSFSGELAYEIHVPNASLYAAYTALREAGDKHGLRLFGSHA
VDSMRLEKGFLDWKAYLLTE
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mRNA from alignment at C-australica_Contig_10403:1..822+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10403.1.1 ID=mRNA_C-australica_Contig_10403.1.1|Name=mRNA_C-australica_Contig_10403.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=822bp|location=Sequence derived from alignment at C-australica_Contig_10403:1..822+ (Chrysoparadoxa australica CS_1217)
CCCGCAGGCCGCATGGCCAAGACCACGCCCCTGACCCCGATCCTGCAAAA CGAAGGGGCGCATTTCGGCCCCGTCAACGGCTGGGAACGGGCCGAAGTCT TTGCCCCAGGCCTGCACATCACCCCCAGCTACCGTTTCGATGAGGCGCAT GACGCCGTCGCCGCCGAGGTCACCGCCGTCCACACCGCCGTCGGACTGTG TGAGGTCAACGGCTTCAACCGGCTGGAAATCACCGGCGCCGACCGCCACG CCTTTCTGGATCGGCTCTGCTGTGGCCGCGTGACGAAAAAGGGCGGCCGC GTGGGCCTTGGCTACCTGCTGAACGACCACGGCATGATCAAGGCAGAGGC GACATTCGCCAACCTGCCCGCCTCTGACCGGGGCCCCGCTCGGGTCTGGT ACGGCTCTGCCGCCGCGTCCGAATTCCACGACATGGACTGGCTCATGGCG CACAAGCGCGCCGAGGAGGACGTGCAGATCCGCAGCCTGACCAACGATTT GACCATCCTCGTTCTGGCAGGACCCAAGGCGCGCGACGTGCTCGTCGCCA CCTCCCGCGGCGACTGGTCGGCGCAGGGCTTCCCCTGGCTCTCCGCCCGC GAATGTTTCATCGGCTTTGCCCCGGCCACCGTTCTGTCCGTCAGCTTTTC CGGCGAACTCGCCTATGAAATCCACGTCCCCAACGCCTCCCTCTACGCCG CCTACACCGCCCTGCGCGAGGCCGGGGACAAGCACGGTCTCCGCCTGTTT GGCAGCCACGCGGTCGACTCCATGCGGCTCGAAAAGGGCTTTCTGGACTG GAAGGCCTACCTTCTGACCGAA
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Coding sequence (CDS) from alignment at C-australica_Contig_10403:1..822+

>mRNA_C-australica_Contig_10403.1.1 ID=mRNA_C-australica_Contig_10403.1.1|Name=mRNA_C-australica_Contig_10403.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=810bp|location=Sequence derived from alignment at C-australica_Contig_10403:1..822+ (Chrysoparadoxa australica CS_1217)
ATGGCCAAGACCACGCCCCTGACCCCGATCCTGCAAAACGAAGGGGCGCA
TTTCGGCCCCGTCAACGGCTGGGAACGGGCCGAAGTCTTTGCCCCAGGCC
TGCACATCACCCCCAGCTACCGTTTCGATGAGGCGCATGACGCCGTCGCC
GCCGAGGTCACCGCCGTCCACACCGCCGTCGGACTGTGTGAGGTCAACGG
CTTCAACCGGCTGGAAATCACCGGCGCCGACCGCCACGCCTTTCTGGATC
GGCTCTGCTGTGGCCGCGTGACGAAAAAGGGCGGCCGCGTGGGCCTTGGC
TACCTGCTGAACGACCACGGCATGATCAAGGCAGAGGCGACATTCGCCAA
CCTGCCCGCCTCTGACCGGGGCCCCGCTCGGGTCTGGTACGGCTCTGCCG
CCGCGTCCGAATTCCACGACATGGACTGGCTCATGGCGCACAAGCGCGCC
GAGGAGGACGTGCAGATCCGCAGCCTGACCAACGATTTGACCATCCTCGT
TCTGGCAGGACCCAAGGCGCGCGACGTGCTCGTCGCCACCTCCCGCGGCG
ACTGGTCGGCGCAGGGCTTCCCCTGGCTCTCCGCCCGCGAATGTTTCATC
GGCTTTGCCCCGGCCACCGTTCTGTCCGTCAGCTTTTCCGGCGAACTCGC
CTATGAAATCCACGTCCCCAACGCCTCCCTCTACGCCGCCTACACCGCCC
TGCGCGAGGCCGGGGACAAGCACGGTCTCCGCCTGTTTGGCAGCCACGCG
GTCGACTCCATGCGGCTCGAAAAGGGCTTTCTGGACTGGAAGGCCTACCT
TCTGACCGAA
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