mRNA_C-australica_Contig_104.6.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_104.6.1
Unique NamemRNA_C-australica_Contig_104.6.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_104.6.1 vs. uniprot
Match: A0A6H5KAI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI0_9PHAE)

HSP 1 Score: 338 bits (868), Expect = 1.390e-100
Identity = 191/385 (49.61%), Postives = 265/385 (68.83%), Query Frame = 3 
Query:   12 FKRCLCVNQEGRRRVCIPPKVGWMCEREATLIKADIILEREQVERDRAKMEREDVDFRIKLAKTIVMEYSESPEGRAYYQRKAIAKAESITREKEAGKYQSEAEALLARRKDQINAGFEKDKAKLLKVRDDRLADMRLKVKEMEAAAETLRGWGLEQKEAQIDELVKSMKKLPEDKALAALHDKWEQALEKAVTD-AQVKTQKTNKKVMFKKMKRGGKVFQDLVDELLIDMVNRDAEKEGKRAEARAHEDHA------------------VIRRIMAMWIGLGMRETFADWKAWTQQCIRRRRRDRRQAIRQAWHDFEAANVVTEMAEWKMNKWEEHWDEYNDIPYWIHCETRITRYEPVPTIEEFMPEGHEIPKPPAVQLEDLS 1109
            F+RC C+   GRRRVC+PPKVGWMCER+ATLIK DIILEREQ ER R   ERED++FR+ LA+ +V E SE+ EG+  Y +KAI  AE++ ++K+ G+++SEAEA+   R+  +   F K K  L K R+ RLAD++LKV  ++    +LRGWG EQKEAQID+++ SM  LPED+ LA +  + E+ + K     A V TQK  + VM KK+KR  K FQ++VDE+++D+V +D E  G+ A  +A ++H                   V RRIMAMW+G+GMRE+FA+WK WT++ I +RR+D R+A+R+AWH++EAA VV+ MAEWK + WEE +D Y D   W H ET   R    PT+EEF+P+G+E+PKPP+ +LED+S
Sbjct:  217 FRRCGCMGANGRRRVCVPPKVGWMCERKATLIKHDIILEREQEERRRQATEREDIEFRVALARRLVKEGSETIEGKKSYTKKAIRMAEALKKKKQMGEFESEAEAMKVHRRQVVEKKFSKRKDALNKEREHRLADLKLKVAGLQEELVSLRGWGKEQKEAQIDQVLASMATLPEDRKLAEVEQQLEEEVAKLEEKVAMVATQKA-RNVMGKKVKRD-KEFQEIVDEMVVDLVLQDMEAAGENARRKAEQEHEARLWKQFIIPSFQSDAPRVFRRIMAMWLGVGMRESFAEWKIWTKKRISQRRKDARKALREAWHNYEAAGVVSVMAEWKASFWEEEYDIYTDTQTWRHKETGDVRTVR-PTVEEFIPDGYEVPKPPSQRLEDMS 598
[Close]
BLAST of mRNA_C-australica_Contig_104.6.1 vs. uniprot
Match: D8LMJ1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ1_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 7.630e-96
Identity = 173/330 (52.42%), Postives = 238/330 (72.12%), Query Frame = 3 
Query:   12 FKRCLCVNQEGRRRVCIPPKVGWMCEREATLIKADIILEREQVERDRAKMEREDVDFRIKLAKTIVMEYSESPEGRAYYQRKAIAKAESITREKEAGKYQSEAEALLARRKDQINAGFEKDKAKLLKVRDDRLADMRLKVKEMEAAAETLRGWGLEQKEAQIDELVKSMKKLPEDKALAALHDKWEQALEKAVTDAQVKTQKTNKKVMFKKMKRGGKVFQDLVDELLIDMVNRDAEKEGKRAEARAHEDHAVIRRIMAMWIGLGMRETFADWKAWTQQCIRRRRRDRRQAIRQAWHDFEAANVVTEMAEWKMNKWEEHWDEYNDIPYWIH 1001
            F+RC C+   GRRRVC+PPKVGWMCER+ATLIK DIILEREQ ER R   ERED++FR+ LA+ +V E SE+ EG+  Y +KAI  AE++ ++K+ G ++SEAEA+ A R+  +   F K K  L K R+ RLAD++LKV  ++    +LRGWG EQKEAQID+++ SM  LPEDK LA +  + E+ + K    A +   +  +KVM KK+KRG K FQ++VDE+++D+V +D E  G+ A  +A ++H V RRIMAMW+G+GMRE+FA+WK WT++ I +RR+D R+A+R+AWHD+EAA VV+ MAEWK + WEE +D Y D   W H
Sbjct:  518 FRRCGCMGANGRRRVCVPPKVGWMCERKATLIKHDIILEREQEERRRQATEREDIEFRVTLARRLVKEGSETIEGKKNYTKKAIRMAEALKKKKQMGDFESEAEAMKAHRRQVVEKKFSKRKDALNKEREHRLADLKLKVAGLQEELVSLRGWGKEQKEAQIDQVLASMATLPEDKKLAEVEQQLEEEVAKLEEKAAMVATQKARKVMGKKVKRGDKEFQEIVDEMVVDLVLQDMEAAGESARRKAEQEHEVFRRIMAMWLGVGMRESFAEWKIWTKKRISQRRKDARKALREAWHDYEAAGVVSVMAEWKASFWEEEYDIYTDTQTWRH 847
[Close]
BLAST of mRNA_C-australica_Contig_104.6.1 vs. uniprot
Match: A0A835ZAZ8_9STRA (Cyclic nucleotide-binding domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ8_9STRA)

HSP 1 Score: 161 bits (408), Expect = 6.700e-37
Identity = 78/175 (44.57%), Postives = 109/175 (62.29%), Query Frame = 3 
Query:  645 MKRGGKVFQDLVDELLIDMVNRDAEKEGKRAEARAHEDHAVIRRIMAMWIGLGMRETFADWKAWTQQCIRRRRRDRRQAIRQAWHDFEAANVVTEMAEWKMNK--------------------WEEHWDEYNDIPYWIHCETRITRYEPVPTIEEFMPEGHEIPKPPAVQLEDLS 1109
            ++R    F +LV EL+ D V  D E+EG  A     E+HAV+RR+M +W+G+GMRE FADWKAWT++ I+ RRRDR QA+RQAW  +E  +V  EMA W + K                    W E WD YND+P+W+H  T   R++P PT+ E++P G++ P PP+ ++EDLS
Sbjct:  128 VQRNDAAFLELVAELIADGVAADMEREGAAARRSGAEEHAVLRRVMGLWLGMGMREAFADWKAWTKRRIKLRRRDRHQAVRQAWQRYETNSVAMEMARWNVGKRRQSPHSLPHLRLRTRARSQWSEQWDAYNDVPFWVHATTGAIRWDP-PTVPEYLPPGYQEPAPPSDRVEDLS 301
[Close]
BLAST of mRNA_C-australica_Contig_104.6.1 vs. uniprot
Match: A0A7S4A2F7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A2F7_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.030e-33
Identity = 111/375 (29.60%), Postives = 197/375 (52.53%), Query Frame = 3 
Query:    3 VVHFKRCLCVNQEGRRRVCIPPKVGWMCEREATLIKADIILEREQVERDRAKMEREDVDFRIKLAKTIVMEYSESPEGRAYYQRKAIAKAESITREKEAGKYQSEAEALLARRKDQINAGFEKDKAKLLKVRDDRL-ADMRLKVKE-MEAAAETLRGWGLEQKEAQIDELVKSMKKLPEDKALAALHDKWEQALEKAVTDAQVK--TQKTNKKV----MFKKMKRGGKVFQDLVDELLIDMVNRDAEKEGKRAEARAHEDHAVIRRIMAMWIGLGMRETFADWKAWTQQCIRRRRRDRRQAIRQAWHDFEAANVVTEMAEWKMNKWEEHWDEYNDIPYWIHCETRITRYEPVPTIEEFMPEGHEIPKPPAVQLED 1103
            V  FKRC CV+ +G ++VC+PPK GWMC+R A L K  +IL+RE+   D  K E   +   ++ A+     +  S EG   ++++A+ +A     E+   ++    +  L  +  +I   F+ DK K L+ R  +  A++  ++K+ +E    T  G+  E  + QI E++ ++K +PED+ +       E+A ++A+  AQ    +++ +K V    +F+          +L  EL  D+  R  +K+ K+AEA   ++HA +R+I   W G+G  E F  W+ W ++  +RR +D   A R             E+A+W ++K+++  DE++D PYW+H ET +T ++  P +E  +P G     P  + +ED
Sbjct:  592 VCMFKRCRCVDADGNKKVCVPPKPGWMCKRRADLFKCRVILQREKRMMDERKREEAAIQQAVENARVAATAFCHSEEGIQRFRKRAVKRAAIEMDERRRIEFNENYDNKLKAKLARIEKRFD-DKDKKLRARRGKAEAELYKRLKDDLEPKESTTEGYAQETIKRQIKEVLTTLKNMPEDRDIRYN----ERARQRAIKAAQKNRDSKEWHKAVGIMKLFEPASTNLLAEAELAQELSHDLHTRYIDKQLKKAEAEVRKEHAAMRKISGAWSGMGALEVFRGWRKWARREAKRRAKDVFCAQRDELKWAADCVAALELAQWTVDKYDKFVDEWSDEPYWVHRETGVTVWDE-PNVESLLPPGMAEKFPERLVIED 960
[Close]
BLAST of mRNA_C-australica_Contig_104.6.1 vs. uniprot
Match: A0A7S1BRV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BRV4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.500e-15
Identity = 83/334 (24.85%), Postives = 167/334 (50.00%), Query Frame = 3 
Query:   84 CEREATLIKADIILEREQVERDRAKMEREDVDFRIKLAKTIVMEYSESPEGRAYYQRKAIAKAESITREKEAGKYQSEAEALLARRKDQINAGFEKDKAKLLKVRDDRLADMRLKVKEMEAAAETLRGWGLEQK-EAQIDELVKSMKKLPEDKALAALHDKWEQALEKAVTDAQVKTQKTNKKVM-----FKKMKRGGKVFQDL--VDELLIDMVNRDAEKEGKRAEARAHEDHAVIRRIMAMWIGLGMRETFADWKAWTQQCIRRRRRDRRQAIRQAWHDFEAANVVTEMAEWKMNKWEEHWDEYNDIPYWIHCETRITRYEPVPTIEEFMPE 1061
            C R   L+K  ++L RE  ER R + E   ++    +A+ +   + ++ EG+   QR A  + + + + ++A  +Q ++ A+    + +     +K + +L K  D++   +  K++      +   G  +  + E +ID+L K       +K LA L  + E ++        ++ QK  +K+M     FK    G    ++   V  L++++     E+E   +  +   ++   R++M  W+ L + E F  WK+WT++ + ++RR+ R A + A  ++E +     +A  K+ KW EHWD++ND+P+W+H +T  T +E  P +E ++PE
Sbjct:  581 CTRNVLLVKKKLLLVREVAERKRVQAENFRIEENATIAEIVAKNFLKTEEGKEMVQRLAKTRYKEMKQAEKAAMFQEKSSAIAEYDRVKDEERLKKKRFQLRKKYDEKERYLLEKIQRSNKDNDD--GAVINSRLEHEIDDLRKDY-----EKRLALLERQMEASV--------IRRQKRKEKIMKTWVDFKHRFLGTAPSEESKKVKHLIMNVETEFVEREVSTSRKKTMRNNETYRKVMLRWLDLCLYERFDAWKSWTKERLVQKRREVRAANQLARINYEDSLAYIVLANDKLQKWTEHWDDFNDMPFWVHGDTGETVWEE-PVLELYLPE 898
[Close]
BLAST of mRNA_C-australica_Contig_104.6.1 vs. uniprot
Match: A0A7S2D150_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D150_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.860e-13
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 3 
Query:   12 FKRCLCVNQEGRRRVCIPPKVGWMCEREATLIKADIILEREQVERDRAKMEREDVDFRIKLAKTIVMEYSESPEGRAYYQRKA 260
            F+RC CV++ G+RRVC+PPK GWMC+R A L K +I LE E+  R+  K + ++V+     A+T    Y ES EG+ Y++R A
Sbjct:   58 FRRCCCVDESGKRRVCVPPKKGWMCKRTAFLFKMEICLETEKKARELKKAQEKEVESAGIAAETFARTYCESDEGQIYFRRLA 140
[Close]
BLAST of mRNA_C-australica_Contig_104.6.1 vs. uniprot
Match: A0A7S4K159_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K159_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.680e-11
Identity = 38/110 (34.55%), Postives = 65/110 (59.09%), Query Frame = 3 
Query:  777 IMAMWIGLGMRETFADWKAWTQQCIRRRRRDRRQAIRQAWHDFEAANVVTEMAEWKMNKWEEHWDEYNDIPYWIHCET-RITRYEPVPTIEEFMPEGHEIPKPPAVQLED 1103
            I+  W+GL M + F +WK    +  ++R+RD R   ++    +E+     E A+ ++++WE HWDE+ND+PYW+H  T  I R EP  T++  +P G + P+ P+  L +
Sbjct:    6 ILKSWLGLSMEDVFLEWKDIVARLKKQRQRDERVERKKQKLAYESELARLEHAKREVDQWERHWDEWNDVPYWVHSLTDEIVREEP--TVDWILPPGWKNPEMPSFLLNE 113
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_104.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KAI0_9PHAE1.390e-10049.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMJ1_ECTSI7.630e-9652.42Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835ZAZ8_9STRA6.700e-3744.57Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S4A2F7_9STRA2.030e-3329.60Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1BRV4_9STRA1.500e-1524.85Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S2D150_9STRA1.860e-1345.78Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S4K159_9STRA1.680e-1134.55Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_104contigC-australica_Contig_104:14388..19301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMJ1
Preferred nameLRCH1
PFAMsCH,LRR_8
Model size2581
Max annot lvl2759|Eukaryota
KEGG koko:K09506,ko:K10641
Hectar predicted targeting categoryother localisation
GOsGO:0002682,GO:0002683,GO:0002685,GO:0002686,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0010033,GO:0016020,GO:0023052,GO:0030334,GO:0030336,GO:0032879,GO:0034097,GO:0034260,GO:0040012,GO:0040013,GO:0042221,GO:0043086,GO:0043087,GO:0044092,GO:0044424,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051270,GO:0051271,GO:0051336,GO:0051346,GO:0051716,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071345,GO:0071944,GO:1990868,GO:1990869,GO:2000145,GO:2000146,GO:2000401,GO:2000402,GO:2000404,GO:2000405
Exons15
Evalue2.4e-83
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
EC2.3.2.27
Descriptionregulation of response to stimulus
Cds size1893
COG categoryU
BRITEko00000,ko01000,ko03009,ko03110,ko04121,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_104.6.1prot_C-australica_Contig_104.6.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_104 15199..19221 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586776.8584144-UTR-C-australica_Contig_104:14387..148901682586776.8584144-UTR-C-australica_Contig_104:14387..14890Chrysoparadoxa australica CS_1217UTRC-australica_Contig_104 14388..14890 -
1682586776.8682275-UTR-C-australica_Contig_104:15093..151981682586776.8682275-UTR-C-australica_Contig_104:15093..15198Chrysoparadoxa australica CS_1217UTRC-australica_Contig_104 15094..15198 -
1682586777.0012343-UTR-C-australica_Contig_104:19221..193011682586777.0012343-UTR-C-australica_Contig_104:19221..19301Chrysoparadoxa australica CS_1217UTRC-australica_Contig_104 19222..19301 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586776.8762908-CDS-C-australica_Contig_104:15198..152341682586776.8762908-CDS-C-australica_Contig_104:15198..15234Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 15199..15234 -
1682586776.8842723-CDS-C-australica_Contig_104:15405..156241682586776.8842723-CDS-C-australica_Contig_104:15405..15624Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 15406..15624 -
1682586776.8922057-CDS-C-australica_Contig_104:15838..160401682586776.8922057-CDS-C-australica_Contig_104:15838..16040Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 15839..16040 -
1682586776.901335-CDS-C-australica_Contig_104:16173..163241682586776.901335-CDS-C-australica_Contig_104:16173..16324Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 16174..16324 -
1682586776.9092386-CDS-C-australica_Contig_104:16578..166501682586776.9092386-CDS-C-australica_Contig_104:16578..16650Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 16579..16650 -
1682586776.917162-CDS-C-australica_Contig_104:16797..169921682586776.917162-CDS-C-australica_Contig_104:16797..16992Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 16798..16992 -
1682586776.9250562-CDS-C-australica_Contig_104:17088..173561682586776.9250562-CDS-C-australica_Contig_104:17088..17356Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 17089..17356 -
1682586776.932875-CDS-C-australica_Contig_104:17528..176121682586776.932875-CDS-C-australica_Contig_104:17528..17612Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 17529..17612 -
1682586776.9407568-CDS-C-australica_Contig_104:17834..179601682586776.9407568-CDS-C-australica_Contig_104:17834..17960Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 17835..17960 -
1682586776.9487169-CDS-C-australica_Contig_104:18087..182661682586776.9487169-CDS-C-australica_Contig_104:18087..18266Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 18088..18266 -
1682586776.9620705-CDS-C-australica_Contig_104:18416..184801682586776.9620705-CDS-C-australica_Contig_104:18416..18480Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 18417..18480 -
1682586776.9731-CDS-C-australica_Contig_104:18617..187821682586776.9731-CDS-C-australica_Contig_104:18617..18782Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 18618..18782 -
1682586776.9839044-CDS-C-australica_Contig_104:18922..190391682586776.9839044-CDS-C-australica_Contig_104:18922..19039Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 18923..19039 -
1682586776.992154-CDS-C-australica_Contig_104:19206..192211682586776.992154-CDS-C-australica_Contig_104:19206..19221Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 19207..19221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_104.6.1

>prot_C-australica_Contig_104.6.1 ID=prot_C-australica_Contig_104.6.1|Name=mRNA_C-australica_Contig_104.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=631bp
MCEREATLIKADIILEREQVERDRAKMEREDVDFRIKLAKTIVMEYSESP
EGRAYYQRKAIAKAESITREKEAGKYQSEAEALLARRKDQINAGFEKDKA
KLLKVRDDRLADMRLKVKEMEAAAETLRGWGLEQKEAQIDELVKSMKKLP
EDKALAALHDKWEQALEKAVTDAQVKTQKTNKKVMFKKMKRGGKVFQDLV
DELLIDMVNRDAEKEGKRAEARAHEDHAVIRRIMAMWIGLGMRETFADWK
AWTQQCIRRRRRDRRQAIRQAWHDFEAANVVTEMAEWKMNKWEEHWDEYN
DIPYWIHCETRITRYEPVPTIEEFMPEGHEIPKPPAVQLEDLSDSDDTEG
SEGDSSLSSGSESEGSSGNDNEISSSSSSSSSSGSGSEESSEESSEDVSD
SEDNGSNDGDGSDGHGDSNSESGDGDDKSEAEKDAGDSAGGDEPAYKAQD
AQEGTKTDDGDDGRGNTATSSTDAESCSSAVKDQLAAAAQHARDRKEKAE
KRSSRGGSSASASAGSISSNSHHSLVARLETEASNALARARQHRQKSQAR
FKKERDTRKELQLLEEEGSERIEVTVDSIMQMVGYDSSADYSMTEMTKMS
EAALKLMKEHHVDPSELQKFGMTKDFSGLA*
back to top

mRNA from alignment at C-australica_Contig_104:14388..19301-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_104.6.1 ID=mRNA_C-australica_Contig_104.6.1|Name=mRNA_C-australica_Contig_104.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4914bp|location=Sequence derived from alignment at C-australica_Contig_104:14388..19301- (Chrysoparadoxa australica CS_1217)
AGGTGGTACACTTTAAAAGATGCTTATGCGTGAATCAAGAGGGAAGACGA
AGGGTCTGCATCCCACCAAAAGTCGGGTGGATGTGTGAGCGAGAGGTCAT
ACCATGCATGCCTTGGTCCAGATGCCACACTTGTGAAGTGCTTTATCATT
TTTCTCCTTCAAGTCATCAAGTAATATCCACCTCCCCTTCCTTTTCTTCT
GCTCACCATTCCTTTCACTTAGGTTCTTTCCAGTAGTGACTCTTTGACTT
GCTCCATTCTAGGCTACACTCATCAAAGCTGATATTATCCTGGAGCGAGA
ACAAGTTGAGAGAGACAGAGCAAAGATGGAGCGGGAAGATGTAGACTTCA
GAATAAAGCTAGCTAAGACCATTGTCATGGTAGGTGTTTCTGAGGCAGGA
AGCTTGTATTGGTATTGGTATTGGTATTGGCGCCGTTCAGCGTTGCTTAG
CATTGTTAGTCAGTTGAATAGTAGCACACTCAACTGTATTACTTACATTA
CTTACATTAATTTTGGCAGGAGTATTCAGAGAGTCCCGAAGGGCGCGCCT
ATTATCAGCGCAAAGCTATTGCCAAAGCTGAGTCAATCACAAGAGAAAAG
GAAGCTGGCAAGTATCAGTCGGAAGCGGAGGCTCTCCTGGCGCGAAGGAA
AGATCAAATAAATGCAGGTTTCGAAAAAGATAAGGTAAGCGTGTGCAAGC
AGCTGTTCCCATCTGCATTATGCAGCTGGATCTATCACGGTGCAACGAAT
AAGTGTTTTGCCTTGGCTGGCCCTAATCCAACCTTTTACAAGTTGTAAAT
TACTCCTACCTCTCTCCTCAGGCAAAGCTACTGAAGGTCCGCGATGACCG
TTTGGCTGATATGAGGCTAAAAGTGAAGGAAATGGGTGAGCTCACGTGGC
GTAAAAGTGCACCTCCTTGTCTCTAGCTCACTTTAAATATTGTGGCACAT
GACGTCTGCTCACTGACGTGGCGTCTGCTTACTGATGTGATATCTGCTAA
ATGATGATGTGATATCTGCTAACTGATACCTGCAGAGGCTGCCGCGGAGA
CTTTGAGGGGATGGGGCCTGGAGCAAAAGGAGGCCCAAATAGATGAGTTG
GTCAAGTCAATGAAGAAGTTGCCCGAAGATAAGGCACTAGCTGCCTTACA
TGACAAATGGGAACAAGCTTTGGAAAAGGCTGTGACAGACGCGCAGGTCA
AGACGCAGAAAACGGTGAGCTGATAACTCATAAATCTGTCATGAAAGGAT
GCCAGCCAACAGTAGCAACAAGGCTGAATCGACACTTGACATGCATCTTC
TTGTTTCTGTTTTCTTGTTTACACTGGTTCTGCCTTGTTAGAACAAAAAG
GTCATGTTCAAGAAAATGAAGCGGGGGGGTAAGGTCTTTCAAGATCTTGT
TGATGAGTTACTCATTGATATGGTCAACAGAGATGCTGAGAAGGAAGGGA
AAAGGGCTGAAGCCAGGGTGAGTGAAGGCTACTGGTAGCAGTAGGGGCAT
TTAAGTACTAAAGCGTTGAAGCATTTAAGCATTAAAGCATTAAAGGTGTG
GAGGGGGGGCAAGTGACAAGACTTGATATTGAAGAGGGACCTAGAGGTCC
AGACCTACCTTTGCTGAGTGCAGCCACTGGTCCCCAGGTAGTCCCATAGC
CTAACCCTAACGCTAATGTTTCCCACTTGATCTCTTTAGGCGCATGAGGA
CCATGCTGTAATAAGGCGTATCATGGCTATGTGGATAGGTTTAGGCATGA
GAGAAACATTTGCTGACTGGAAGGTATAGCAGCAGCCAATGACCAATGAC
CAATGACCAATGACCAATGACCAACAACCAAGCCCAGCAATCTCGTTGCT
TCAGCATCCCTGGTGTGACCTCTGCATCACCTTTTGTGTACAACCTTTTG
TGTGCAACCTTTTTTGTATAACTCTTTTTGTGCTGCCTTACGCAGGCCTG
GACACAGCAATGCATTCGTCGCCGCCGCCGTGATAGGCGTCAAGCAATAC
GGCAAGCTTGGCATGACTTTGAAGCTGCAAATGTAGTGACTGAAATGGCT
GAGTGGAAGATGAATAAATGGGAAGAGCACTGGGATGAGTACAACGATAT
CCCCTATTGGATCCATTGCGAGACTAGGATTACTCGATATGAGCCAGTGC
CCACTATTGAAGAATTTATGCCTGAAGGGCATGAAATACCAAAGCCACCA
GCGGTTCAATTAGGTAAGCCTCTGCTTACATGATGCTTGCATGGCTTAAT
CTCTCAGGCTTATTGTCCCTTCTGACTAAGGCCTGCCTGTGATTCCTAAC
CAATCGCAGAGGATTTGAGCGACTCTGATGATACTGAAGGGAGTGAGGGA
GATTCATCGCTCTCCTCCGGCAGTGAAAGTGAAGGCAGCTCAGGCAATGA
CAATGAGATTAGCAGTAGCAGTAGCAGTAGCAGTAGCAGTGGTAGCGGCA
GCGAGGAGAGCTCAGAAGAGAGCTCAGAGGATGTGTCTGATTCGGAGGAC
AATGGTGAGCTATGCCATAATTCTTGTTTATTTCCATCACTGCCATGAGA
TGTGCCCTGCCTCTTGAAACAGGACCACCAGATCCATGTATTCGAACCCG
TGCGAAAATGATCAAAAGCCAGAGCTAATAGCAACTCTTTGATGGCCACA
GGAAGTAATGATGGTGATGGAAGTGATGGCCACGGGGACAGCAACAGCGA
AAGCGGTGATGGTGATGATAAGTGTAAGTTGTATCCGCATCTGAAAGCAG
GCTGAATGTCCTGGCAGCTAGTGCCTTGTTCTACCCCTCCCAGTGCTAAC
ATGCATGTGAAGCCACGCAGTGTGGCAGATAACCTGTTCCTGATGCTTTT
GTTCAGGTTAGGGATCTTTCTCCTTACTTTTCAGCTCTTTTTCAGTTCCT
TATTAGTTGCTAAGCCAACATACAGCGACAGTGACGGCTTCCTTCTGACT
TTGGACTTATTATTGAAACCACTACAGCTGAAGCAGAAAAGGATGCAGGT
GACAGTGCAGGTGGCGATGAGCCTGCTTACAAGGCTCAAGATGCTCAAGA
GGGGACAAAAACTGATGATGGTGATGATGGACGTGGGAATACAGCCACTA
GCAGTACAGATGCTGAGTCATGCTCAAGGTGAGACAGCGTATGGTCCCTA
GGTACACCATAGCGATAGGATGCGTCAGAGCAGTTCTCTCTGGACTAGAT
AAAGACTGATGACTGACAACTGATGACCGACAACTGACAAGAACCATCTG
TTTCTGTGCAGCGCTGTGAAAGACCAGCTGGCTGCAGCAGCACAACATGC
CAGAGATCGAAAGGAAAAAGCAGAAAAGCGAAGCTCTCGAGGTGGATCTT
CCGCCTCAGCTTCAGCTGGCTCTATCAGTAGCAACAGCCATCATTCCCTT
GTGGCAAGGTTGGAAACAGAGGCATCTAATGCTCTTGCAAGGGCTAGGCA
ACACAGGCAAAAGGTACGCGGCCAAGGTGCATTTCAGCCCAACATAAAGC
ATAGCGAGGCTTGAAGGCAAGCTATAAGAATAGAATGCACATGGTACTAG
AGGACCTTCAAACGTTCAGTCTACATGAGCTGTTGGCATGAGCTGTTGGC
CCCTAACCCTAATCTTGTAACTTCAACTTCACTTCCCTGGGCTTTGCCAC
AAATTTGCGGCTGCTGCCTGGTATCAGTCACAGGCTAGGTTTAAGAAGGA
GAGAGACACCCGGAAGGAACTTCAGTTACTTGAAGAAGAGGGATCCGAAA
GAATTGAAGTCACCGTTGACAGCATTATGCAGATGGTGGGATATGACAGC
TCAGCGGACTATTCTATGACTGAGATGACAAAGATGTCTGAGGCAGCTCT
CAAGCTCATGAAAGAGCACCACGTAGACCCTTCAGAGCTGCAGAAGGTGA
AGTGTAATTATGCATACGTCTGGTCCTGAAGTAACCACAATAGCCACCGC
GTTTTGATTCAGAATAAGAGCTTAAGGACCCAATACAAGCGGCAAAACAT
AACCAGACTACCTTACATCATTTCGATTACCAATCAGCTCTCTGAAACTG
ACCCTCTTGCCTCTCAGTTTGGCATGACAAAGGATTTCAGCGGGCTAGCT
TAGAGTGGATGTGCTGCTAGAGGTGTAACTGCGAAGCTCCTGCTCCTGAC
CTGCAGCATGCAGTCATGGTGAGAGGGCTTTCTTTTCATTGAAGGAACGC
CATGCCAGGTAAACTCTAATAATCAATTAGATTGAAAACATGACCTGACA
TGCCAGCTATCTTTTCCCTTATGCGCATTTTAACCTAAACCTAATGCTTG
CTCATCCACTGACCGTGTTGCATATTTTGCTGCACAAAGGCTAAGGACTG
ACTTTCCTGCATGATGCGAGCTGCCTGTATCCCTAAACACATATAATTCG
CCTAACTCTAGGATCTTATTGATCCATGTACAAATGCCTGCACCACATCA
CCAGCGTGCGACCCCAGCAAAATCGTAACTGCTTAGGTTACAGCTGCAAG
TTGCTGTGGTGCTACAGTGCTTGGAACAAGAATTACCAACCTGGGAATTT
GCATCACCCATCTGCGGGGCATTTTGCACGCATCCCTTTGCTCCTCATAT
CACGCCATCCCATCTTTTGCGGCCTCGGGGGAAATGCTATAGCTGGGACT
TCTTAGTGGACAGGTGCAGCTTTGAGATTACACTCACTTGCTAATTGAAT
GTATCTTCTGCATGAACTCCTCGTGAGGGGTTTCCGGTTGCTTGCCAGTG
AATTTCTTTGGTGGGAGCCGAAGGCAGTGGCTTTCCTGACTGAGGGTGGG
TTCTTTAGGGGGGTTGAGGCCATGGGGAGCGTCCTGACGGATGCATTGAG
GGTGCAAACAATGTTGAAGAGGCTTCCTGGGCTTTGCCTGGAGCAGGGAC
AGGACCACCTGGTG
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_104:14388..19301-

>mRNA_C-australica_Contig_104.6.1 ID=mRNA_C-australica_Contig_104.6.1|Name=mRNA_C-australica_Contig_104.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1893bp|location=Sequence derived from alignment at C-australica_Contig_104:14388..19301- (Chrysoparadoxa australica CS_1217)
ATGTGTGAGCGAGAGGCTACACTCATCAAAGCTGATATTATCCTGGAGCG
AGAACAAGTTGAGAGAGACAGAGCAAAGATGGAGCGGGAAGATGTAGACT
TCAGAATAAAGCTAGCTAAGACCATTGTCATGGAGTATTCAGAGAGTCCC
GAAGGGCGCGCCTATTATCAGCGCAAAGCTATTGCCAAAGCTGAGTCAAT
CACAAGAGAAAAGGAAGCTGGCAAGTATCAGTCGGAAGCGGAGGCTCTCC
TGGCGCGAAGGAAAGATCAAATAAATGCAGGTTTCGAAAAAGATAAGGCA
AAGCTACTGAAGGTCCGCGATGACCGTTTGGCTGATATGAGGCTAAAAGT
GAAGGAAATGGAGGCTGCCGCGGAGACTTTGAGGGGATGGGGCCTGGAGC
AAAAGGAGGCCCAAATAGATGAGTTGGTCAAGTCAATGAAGAAGTTGCCC
GAAGATAAGGCACTAGCTGCCTTACATGACAAATGGGAACAAGCTTTGGA
AAAGGCTGTGACAGACGCGCAGGTCAAGACGCAGAAAACGAACAAAAAGG
TCATGTTCAAGAAAATGAAGCGGGGGGGTAAGGTCTTTCAAGATCTTGTT
GATGAGTTACTCATTGATATGGTCAACAGAGATGCTGAGAAGGAAGGGAA
AAGGGCTGAAGCCAGGGCGCATGAGGACCATGCTGTAATAAGGCGTATCA
TGGCTATGTGGATAGGTTTAGGCATGAGAGAAACATTTGCTGACTGGAAG
GCCTGGACACAGCAATGCATTCGTCGCCGCCGCCGTGATAGGCGTCAAGC
AATACGGCAAGCTTGGCATGACTTTGAAGCTGCAAATGTAGTGACTGAAA
TGGCTGAGTGGAAGATGAATAAATGGGAAGAGCACTGGGATGAGTACAAC
GATATCCCCTATTGGATCCATTGCGAGACTAGGATTACTCGATATGAGCC
AGTGCCCACTATTGAAGAATTTATGCCTGAAGGGCATGAAATACCAAAGC
CACCAGCGGTTCAATTAGAGGATTTGAGCGACTCTGATGATACTGAAGGG
AGTGAGGGAGATTCATCGCTCTCCTCCGGCAGTGAAAGTGAAGGCAGCTC
AGGCAATGACAATGAGATTAGCAGTAGCAGTAGCAGTAGCAGTAGCAGTG
GTAGCGGCAGCGAGGAGAGCTCAGAAGAGAGCTCAGAGGATGTGTCTGAT
TCGGAGGACAATGGAAGTAATGATGGTGATGGAAGTGATGGCCACGGGGA
CAGCAACAGCGAAAGCGGTGATGGTGATGATAAGTCTGAAGCAGAAAAGG
ATGCAGGTGACAGTGCAGGTGGCGATGAGCCTGCTTACAAGGCTCAAGAT
GCTCAAGAGGGGACAAAAACTGATGATGGTGATGATGGACGTGGGAATAC
AGCCACTAGCAGTACAGATGCTGAGTCATGCTCAAGCGCTGTGAAAGACC
AGCTGGCTGCAGCAGCACAACATGCCAGAGATCGAAAGGAAAAAGCAGAA
AAGCGAAGCTCTCGAGGTGGATCTTCCGCCTCAGCTTCAGCTGGCTCTAT
CAGTAGCAACAGCCATCATTCCCTTGTGGCAAGGTTGGAAACAGAGGCAT
CTAATGCTCTTGCAAGGGCTAGGCAACACAGGCAAAAGTCACAGGCTAGG
TTTAAGAAGGAGAGAGACACCCGGAAGGAACTTCAGTTACTTGAAGAAGA
GGGATCCGAAAGAATTGAAGTCACCGTTGACAGCATTATGCAGATGGTGG
GATATGACAGCTCAGCGGACTATTCTATGACTGAGATGACAAAGATGTCT
GAGGCAGCTCTCAAGCTCATGAAAGAGCACCACGTAGACCCTTCAGAGCT
GCAGAAGTTTGGCATGACAAAGGATTTCAGCGGGCTAGCTTAG
back to top