mRNA_C-australica_Contig_104.13.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_104.13.1
Unique NamemRNA_C-australica_Contig_104.13.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_104.13.1 vs. uniprot
Match: D8LMJ3_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ3_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.810e-16
Identity = 53/105 (50.48%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:  403 RYTLLSQVERSHSSITSSLATQYPEALGEFSFSDINDEDLYQSWRFPFMVLFTVVVVIVMLNLLVSLLNDLYEELKTRAKADWCRAQAVAICAASEAKTQAQQNQ 717
            RYTLL ++E    SI+S++ATQYPE LGEF+F DI  E+LYQSWR+ F  L                 NDLYEELK+ A ADWCRAQA AI   +   +Q Q+ Q
Sbjct:  853 RYTLLGELEFLMKSISSAVATQYPETLGEFTFDDIRAENLYQSWRYSFTALXXXXXXXXXXXXXXXXXNDLYEELKSLATADWCRAQATAIYMNARWHSQQQRQQ 957
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BLAST of mRNA_C-australica_Contig_104.13.1 vs. uniprot
Match: A0A7S1UJ27_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJ27_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.110e-13
Identity = 42/105 (40.00%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:  349 VKSFGPLLAIIYLAWSLARYTLLSQVERSHSSITSSLATQYPEALGEFSFSDINDED--LYQSWRFPFMVLFTVVVVIVMLNLLVSLLNDLYEELKTRAKADWCR 657
            + ++  LL I+YL + L+RYT+L Q+  +   +  S+ T Y + LGEFSF ++N  D  LY    F  +++FT+VVVI++LN+LV++L +LY++ K  ++  WCR
Sbjct:    8 LSAYMALLMILYLGFGLSRYTMLGQLAANERELFISIVTAYAQTLGEFSFENLNSYDYVLYGFEAF-LLIMFTLVVVILLLNMLVTILMELYDDKKESSQTFWCR 111
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BLAST of mRNA_C-australica_Contig_104.13.1 vs. uniprot
Match: A0A7S2S7E1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S7E1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.660e-5
Identity = 59/202 (29.21%), Postives = 108/202 (53.47%), Query Frame = 1 
Query:   64 YFLNLFHIVDLVLL----GLHGYIFSLYALQAAELARFD-FSADDRFIDLRVLASLEQDERVVVATTLLLAWIKLLQPLQGVFRDFYMLVKMMALMMGKLVKSFGPLLAIIYLAWSLARYTLLSQVERSHSSITSSLATQYPEALGEFSFSDINDEDLYQSWRFPFMVLFTVVVVIVMLNLLVSLLNDLYEELKTRAKADWC 654
            Y+++ F+ VD V++     L G   SL     A L+ F  +S  + F+D+  L  L    + ++A  +LL +IK L+ LQ V R   + V ++  M+ +L+ SF  + A+  LA++L  + L        SS+  S+   +  ALG+  F      +L +++      +   ++V+++LNLL++++N+ YEE+K  A+A WC
Sbjct: 1215 YWVSPFNYVDCVIMMFIITLIGVHISLVTQSNARLSEFKMYSNSENFVDVSDLFWLASVRQHLLAIVVLLCYIKSLEYLQ-VTRGLAIPVIIIGGMLMQLL-SFFLIFAVFILAFALFDFVLYGLTFEPTSSVLRSVVFTFRAALGDLDFD--GKYELDRTFAIMMTCVSAFLLVVLLLNLLIAVMNEAYEEIKDSAEARWC 1412
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BLAST of mRNA_C-australica_Contig_104.13.1 vs. uniprot
Match: A0A2R5GL37_9STRA (Ankyrin repeat domain-containing protein 17 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GL37_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.340e-5
Identity = 60/202 (29.70%), Postives = 108/202 (53.47%), Query Frame = 1 
Query:   64 YFLNLFHIVDLVLLGLHGYIFSLYALQAAE-LARFDF----SADDRFIDLRVLASLEQDERVVVATTLLLAWIKLLQPLQGVFRDFYMLVKMMALMMGKLVKSFGPLLAIIYLAWSLARYTLLSQVERSHSSITSSLATQYPEALGEFSFSDINDEDLYQSWRFPFMVLFTVVVVIVMLNLLVSLLNDLYEELKTRAKADWC 654
            Y++N F+ VD+ ++ +   + S++A  A++ LAR D     SA D FID+  +       + ++A  + L +IK L+ LQ V     + V ++  M+ +L+ SF  + A+  LA+ L  + L        SS+  +L   +  +LG+  F      +L ++      VL   ++VI++LNLL++++N+ YEE K  A+A WC
Sbjct: 2366 YWINPFNYVDICIMIIFLALTSVHAHVASQVLARLDMWHTDSAQDTFIDISDVLWYANVRQHLLAFAVFLCYIKSLEFLQ-VSASMAIPVIIIGGMLTQLL-SFFLIFAVFILAFGLFDFVLYGLTYEPASSVLRALVATFRASLGDLDFD--GKYELDRTLGIFMTVLSASLLVILLLNLLIAIMNEAYEETKDSAEARWC 2563
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_104.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LMJ3_ECTSI2.810e-1650.48Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
A0A7S1UJ27_9STRA4.110e-1340.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2S7E1_9STRA1.660e-529.21Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2R5GL37_9STRA2.340e-529.70Ankyrin repeat domain-containing protein 17 n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_104contigC-australica_Contig_104:46316..48576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMJ3
PFAMsAnk_2,Ank_3,Ank_5,PID,PKD_channel,SAM_1
Model size967
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00901,ko:K21413,ko:K21952
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005488,GO:0005515
Exons9
Evalue2.8e-18
EggNOG OGsCOG0666@1|root,KOG3599@1|root,KOG0507@2759|Eukaryota,KOG3599@2759|Eukaryota
EC2.7.1.107
Descriptiondetection of mechanical stimulus
Cds size612
COG categoryE
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_104.13.1prot_C-australica_Contig_104.13.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_104 47134..48530 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586777.38258-UTR-C-australica_Contig_104:46315..464031682586777.38258-UTR-C-australica_Contig_104:46315..46403Chrysoparadoxa australica CS_1217UTRC-australica_Contig_104 46316..46403 +
1682586777.3927937-UTR-C-australica_Contig_104:46514..465761682586777.3927937-UTR-C-australica_Contig_104:46514..46576Chrysoparadoxa australica CS_1217UTRC-australica_Contig_104 46515..46576 +
1682586777.401162-UTR-C-australica_Contig_104:46724..467751682586777.401162-UTR-C-australica_Contig_104:46724..46775Chrysoparadoxa australica CS_1217UTRC-australica_Contig_104 46725..46775 +
1682586777.4092336-UTR-C-australica_Contig_104:47025..471331682586777.4092336-UTR-C-australica_Contig_104:47025..47133Chrysoparadoxa australica CS_1217UTRC-australica_Contig_104 47026..47133 +
1682586777.4735599-UTR-C-australica_Contig_104:48530..485761682586777.4735599-UTR-C-australica_Contig_104:48530..48576Chrysoparadoxa australica CS_1217UTRC-australica_Contig_104 48531..48576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586777.417575-CDS-C-australica_Contig_104:47133..471451682586777.417575-CDS-C-australica_Contig_104:47133..47145Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 47134..47145 +
1682586777.4257874-CDS-C-australica_Contig_104:47312..473951682586777.4257874-CDS-C-australica_Contig_104:47312..47395Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 47313..47395 +
1682586777.4342299-CDS-C-australica_Contig_104:47606..477511682586777.4342299-CDS-C-australica_Contig_104:47606..47751Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 47607..47751 +
1682586777.4441311-CDS-C-australica_Contig_104:47984..480701682586777.4441311-CDS-C-australica_Contig_104:47984..48070Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 47985..48070 +
1682586777.454222-CDS-C-australica_Contig_104:48143..482391682586777.454222-CDS-C-australica_Contig_104:48143..48239Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 48144..48239 +
1682586777.4648879-CDS-C-australica_Contig_104:48340..485301682586777.4648879-CDS-C-australica_Contig_104:48340..48530Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 48341..48530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_104.13.1

>prot_C-australica_Contig_104.13.1 ID=prot_C-australica_Contig_104.13.1|Name=mRNA_C-australica_Contig_104.13.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=204bp
MLVKMMALMMGKLVKSFGPLLAIIYLAWSLARYTLLSQVERSHSSITSSL
ATQYPEALGEFSFSDINDEDLYQSWRFPFMVLFTVVVVIVMLNLLVSLLN
DLYEELKTRAKADWCRAQAVAICAASEAKTQAQQNQSSTRGWLRLGIGSS
VQRWIGRYKAAWQSARPGWGFTRRRSIYVVAEDSRVPGLPPCQSSNTRPE
QEP*
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mRNA from alignment at C-australica_Contig_104:46316..48576+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_104.13.1 ID=mRNA_C-australica_Contig_104.13.1|Name=mRNA_C-australica_Contig_104.13.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2261bp|location=Sequence derived from alignment at C-australica_Contig_104:46316..48576+ (Chrysoparadoxa australica CS_1217)
CTTCTTTTAGTAGTTAGCAATGCTTTATTTGCACTTGCTTCAATTAAGCG
CCAGAGGAAGCATTATTTCCTGAACCTGTTTCACATAGGTAACTTAAGTA
TTAGCTTGACTGAACTGAGAATTAAAGATCACCTACGGAGTACTTACTCT
ACTAACCCTGCTGCCTTCTCTACTTCTCTCTTTGCGGATAATTGACCAGT
CGATCTAGTGCTACTGGGACTACATGGTTACATATTTTCACTCTATGCTT
TGCAAGCTGCTGTAAGCACTAGTCTAGTGTAACCTAACCTAAGCTTACCT
TACCACTAAAGCAGATAATATTTGGTCATGAAAGTCTTAACTTGTTCTTT
GTCATCCTCCACCCCTGTCTCATCTCCACCTGAAAAGCCCACTTTCTGCC
CTTTCGTAGGAGTTAGCGCGATTTGACTTTAGCGCTGATGATAGGTTCAT
TGACCTGAGGGTAAGATATGGTTAGGCATATGGTATTCCATGCACTCAAT
CGCTTGGAACGGTTGGCTCTTATTAGCTCCATGACAGATGTTCTCCATAA
GTCAAAACATAAGGATAAGATTTACACCAGATGGCTACATGTTGTAGCAG
AATCTCCTCATAGACTACAACTACTCGCCCCGTGCTGCATCCCCATTCAT
CTGCTTGACATACTCCCTTCGTTGGACATTTCAATCATCTGTTATTCACA
CCTTGAGCAGGTTTTGGCGAGCCTAGAGCAAGATGAGAGAGTAGTGGTAG
CAACTACGCTACTTCTCGCATGGATTAAACTGCTTCAACCATTACAAGGC
GTATTCAGAGACTTTTACATGCTAGTTAAGGTAACGTTGGGCCTCTGATT
TGCTCTGGCAGATAGGTCTAGAAAGAAGAAAGAAGATAAACAGGAGAAGA
GGGCGCAGCTAAGCTACTTGATACCTAGGGGATTGGCCATTAGTTCATGA
ATAACTCATACCTACTCTGTAATGATGATGCATCTTACTTGCTATAGATG
ATGGCGCTCATGATGGGCAAGCTTGTGAAGAGTTTCGGGCCTCTACTGGC
CATCATATATCTCGCCTGGTCATTAGCCAGGTGACGTACTCTTCTAGTTT
TTTTCTCTCTACTTAGGTTATGAGCCTCTTCCTAAGTTACCTCCCCACCA
TACCTAGAGACCTAATCAGCATGTGGGGTGACTGATAACCTATGAGAGTT
AGATCAGGCCCTAACAAATCTCTATCACGCAAGCCTGTCCTATGATAACT
TGCAATGATGGCTGTTACTGAAGCATCTGTCCCTGTTACAGATATACCCT
CCTGAGTCAGGTGGAGAGGTCTCACAGCAGCATCACCTCCTCATTGGCCA
CACAATACCCTGAGGCATTGGGAGAGTTCTCATTCAGCGACATAAACGAT
GAAGACCTATATCAAAGCTGGAGATTCCCCTTCATGGTGATAACTGATAA
CTCACAGCCAGGGCTCGAATAATTGATCATGACGCTTAGGTTTAATTGCA
TGCCAGTAACGCATGTGAATGCTATCCTCTGCATTCTTTTAGCTGTGACT
TGACACTTGAAAACCTCACCATTGCCCTGGAAAACTTTAACCTAACCCTT
AACTGCTTTTTGCCCTGGCACCTCCAGTCTCCACCCTTCTAACCCCATGT
CATGTCTTTATATCAACAGGTTCTATTTACTGTAGTAGTTGTTATCGTGA
TGCTTAATCTCCTGGTATCACTTTTGAACGACCTTTACGAAGAGTTGAAA
ACAAGGTATGAAGTCTTCCAGTCAGTCCTTTTTGGCTACTTTACCCATCA
TATGACTCTCTCTTCTCCTCTTTTAAAGGGCCAAAGCTGACTGGTGTAGA
GCTCAGGCAGTTGCTATATGCGCTGCTTCTGAAGCCAAAACACAAGCACA
GCAAAACCAAAGCAGCACTCGTGGGTGAGTGAGTGATTTAGTGAGTGAGT
GGTATGAGTTGAACGCCTCCACAGGGCAGTCCCTTCCTTACTCCTCCCTT
GCATCCCTCCATCCCCTCTCCCCAGGTGGCTTAGGTTAGGGATAGGTAGT
TCTGTCCAAAGGTGGATTGGTCGATACAAAGCTGCATGGCAATCAGCAAG
GCCAGGCTGGGGTTTCACAAGAAGACGGTCGATCTACGTAGTAGCAGAAG
ACTCTCGGGTTCCAGGCCTCCCTCCTTGCCAAAGCAGCAATACAAGGCCA
GAGCAGGAGCCATAAACGCTTTTCTCTACCATATATTGATAGAAAGCACT
TTCCATCCCTG
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Coding sequence (CDS) from alignment at C-australica_Contig_104:46316..48576+

>mRNA_C-australica_Contig_104.13.1 ID=mRNA_C-australica_Contig_104.13.1|Name=mRNA_C-australica_Contig_104.13.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=612bp|location=Sequence derived from alignment at C-australica_Contig_104:46316..48576+ (Chrysoparadoxa australica CS_1217)
ATGCTAGTTAAGATGATGGCGCTCATGATGGGCAAGCTTGTGAAGAGTTT
CGGGCCTCTACTGGCCATCATATATCTCGCCTGGTCATTAGCCAGATATA
CCCTCCTGAGTCAGGTGGAGAGGTCTCACAGCAGCATCACCTCCTCATTG
GCCACACAATACCCTGAGGCATTGGGAGAGTTCTCATTCAGCGACATAAA
CGATGAAGACCTATATCAAAGCTGGAGATTCCCCTTCATGGTTCTATTTA
CTGTAGTAGTTGTTATCGTGATGCTTAATCTCCTGGTATCACTTTTGAAC
GACCTTTACGAAGAGTTGAAAACAAGGGCCAAAGCTGACTGGTGTAGAGC
TCAGGCAGTTGCTATATGCGCTGCTTCTGAAGCCAAAACACAAGCACAGC
AAAACCAAAGCAGCACTCGTGGGTGGCTTAGGTTAGGGATAGGTAGTTCT
GTCCAAAGGTGGATTGGTCGATACAAAGCTGCATGGCAATCAGCAAGGCC
AGGCTGGGGTTTCACAAGAAGACGGTCGATCTACGTAGTAGCAGAAGACT
CTCGGGTTCCAGGCCTCCCTCCTTGCCAAAGCAGCAATACAAGGCCAGAG
CAGGAGCCATAA
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