mRNA_C-australica_Contig_104.10.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_104.10.1
Unique NamemRNA_C-australica_Contig_104.10.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_104.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_104contigC-australica_Contig_104:37374..38213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size376
Hectar predicted targeting categoryother localisation
Exons4
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586776.4000185-CDS-C-australica_Contig_104:37373..374591682586776.4000185-CDS-C-australica_Contig_104:37373..37459Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 37374..37459 +
1682586776.4086866-CDS-C-australica_Contig_104:37641..377361682586776.4086866-CDS-C-australica_Contig_104:37641..37736Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 37642..37736 +
1682586776.4172168-CDS-C-australica_Contig_104:37910..380081682586776.4172168-CDS-C-australica_Contig_104:37910..38008Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 37911..38008 +
1682586776.4267993-CDS-C-australica_Contig_104:38117..382131682586776.4267993-CDS-C-australica_Contig_104:38117..38213Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 38118..38213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_104.10.1prot_C-australica_Contig_104.10.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_104 37374..38213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_104.10.1

>prot_C-australica_Contig_104.10.1 ID=prot_C-australica_Contig_104.10.1|Name=mRNA_C-australica_Contig_104.10.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=125bp
RRLHHGGQSVQYPHQWGDEDVLMWISCIGLGRLCRVYLEAINAAVAPGGY
TTIGSKESSKGSGSGRMTSSSPTHHPSSHQPSQTHQSSVHLPEVVSMVVK
HGVLPTPFSSHHAKRHSPGGVTTF*
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mRNA from alignment at C-australica_Contig_104:37374..38213+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_104.10.1 ID=mRNA_C-australica_Contig_104.10.1|Name=mRNA_C-australica_Contig_104.10.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=840bp|location=Sequence derived from alignment at C-australica_Contig_104:37374..38213+ (Chrysoparadoxa australica CS_1217)
CGGCGCCTGCATCATGGTGGCCAAAGTGTGCAATACCCACATCAATGGGG
AGATGAGGATGTTCTTATGTGGATATCGTGCATTGGGTGAGTGATATAAT
GTACAAGACTCCTCCCCTGCTGAGTCTCTAGCCTCTTGCCATGCCGTGCC
GGAAACCAATCATTCATGGCACAAATGAATTTGCTACATATCACACTAAC
ATATGGATGCACACTAGTATCACACTAACATATGGATATCACAATGTACA
CAACGCACCACGCATTAGATTGGGGAGGTTGTGCCGGGTGTATCTAGAAG
CAATTAATGCAGCTGTGGCACCTGGTGGCTACACCACAATAGGCAGCAAA
GAAAGTAGCAAAGGTAATGAATGTGGACGTAGTGGCAAAGAATCACCACT
GTACAGAAGGGGCTACACCTCTTGCTCTCAGCAAATGCTATTAGCAGGTT
GTGAAGCCATGAGATACAATATATAACTCTTGTGTTACGTGTGAAGGCAG
CTCTTATTGTTTTTCTTCTAAACTATGCAACTCTCAGGCTCAGGCTCAGG
CCGTATGACATCCTCGTCACCAACACATCATCCATCATCACACCAGCCAT
CACAAACGCACCAGTCTTCAGTGCATCTCCCAGAGGTAGTGTTAAAACAA
AAAATCAGATATGCTGGATGCTGCTATGCCCCATCGATCCTAGATCTTGT
AAATGTTGTATAGGTTGTATACCCAAACCCAAACCTTTGGCCAGGTAGTT
AGCATGGTTGTGAAGCATGGTGTCCTTCCCACACCTTTCAGCTCGCATCA
TGCAAAAAGGCATTCGCCAGGTGGAGTCACAACATTCTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_104:37374..38213+

>mRNA_C-australica_Contig_104.10.1 ID=mRNA_C-australica_Contig_104.10.1|Name=mRNA_C-australica_Contig_104.10.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=375bp|location=Sequence derived from alignment at C-australica_Contig_104:37374..38213+ (Chrysoparadoxa australica CS_1217)
CGGCGCCTGCATCATGGTGGCCAAAGTGTGCAATACCCACATCAATGGGG
AGATGAGGATGTTCTTATGTGGATATCGTGCATTGGATTGGGGAGGTTGT
GCCGGGTGTATCTAGAAGCAATTAATGCAGCTGTGGCACCTGGTGGCTAC
ACCACAATAGGCAGCAAAGAAAGTAGCAAAGGCTCAGGCTCAGGCCGTAT
GACATCCTCGTCACCAACACATCATCCATCATCACACCAGCCATCACAAA
CGCACCAGTCTTCAGTGCATCTCCCAGAGGTAGTTAGCATGGTTGTGAAG
CATGGTGTCCTTCCCACACCTTTCAGCTCGCATCATGCAAAAAGGCATTC
GCCAGGTGGAGTCACAACATTCTAA
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