mRNA_C-australica_Contig_10398.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10398.1.1
Unique NamemRNA_C-australica_Contig_10398.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10398.1.1 vs. uniprot
Match: R7U410_CAPTE (YCII domain-containing protein n=3 Tax=cellular organisms TaxID=131567 RepID=R7U410_CAPTE)

HSP 1 Score: 152 bits (383), Expect = 1.500e-44
Identity = 70/99 (70.71%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:    1 MLYAFISTDVDDSLPRRRTAREAHLARLHELQQQGRLILAGPCPAVDANDPGDNGFTGSLVVAEFDSLADARAWADADPYIEAGVYRDTVVKPFRKVLP 297
            MLYA IS DVD+SLP R  AR AHL RL +L+ +GRL+LAGPCPA+D+NDPG+ GFTGS+VVAEF SL +A+AWADADPYI+AGVYR   +KPF+KVLP
Sbjct:    1 MLYAIISEDVDNSLPLRMNARPAHLERLQQLKNEGRLVLAGPCPAIDSNDPGEAGFTGSIVVAEFASLTEAKAWADADPYIDAGVYRQVTIKPFKKVLP 99
[Close]
BLAST of mRNA_C-australica_Contig_10398.1.1 vs. uniprot
Match: UPI000C771C5F (YciI family protein n=1 Tax=Endozoicomonas acroporae TaxID=1701104 RepID=UPI000C771C5F)

HSP 1 Score: 151 bits (381), Expect = 3.020e-44
Identity = 71/99 (71.72%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:    1 MLYAFISTDVDDSLPRRRTAREAHLARLHELQQQGRLILAGPCPAVDANDPGDNGFTGSLVVAEFDSLADARAWADADPYIEAGVYRDTVVKPFRKVLP 297
            MLYA  S DVD+SLP R  AR AHL RL +L+ +G+L+LAGPCPA+D+NDPG+ GFTGSLVVAEF SL +A+AWADADPYIEAGVYR  +VKPF+KVLP
Sbjct:    1 MLYAIFSEDVDNSLPLRMKARAAHLERLQQLKDKGQLVLAGPCPAIDSNDPGEAGFTGSLVVAEFASLTEAQAWADADPYIEAGVYRQVIVKPFKKVLP 99
[Close]
BLAST of mRNA_C-australica_Contig_10398.1.1 vs. uniprot
Match: A0A142BAU3_9GAMM (YCII domain-containing protein n=2 Tax=Endozoicomonas montiporae TaxID=1027273 RepID=A0A142BAU3_9GAMM)

HSP 1 Score: 150 bits (378), Expect = 8.610e-44
Identity = 71/99 (71.72%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:    1 MLYAFISTDVDDSLPRRRTAREAHLARLHELQQQGRLILAGPCPAVDANDPGDNGFTGSLVVAEFDSLADARAWADADPYIEAGVYRDTVVKPFRKVLP 297
            MLYA IS DV++SLP R+ +R AHLARL +L++QGRLILAGP PA+D+NDPG++GFTGSLVVAEF+SL  A+ WADADPY++AGVYR  VVKPF+KVLP
Sbjct:    1 MLYAVISEDVENSLPLRKASRPAHLARLEQLKEQGRLILAGPLPAIDSNDPGESGFTGSLVVAEFESLDAAQVWADADPYMDAGVYRKVVVKPFKKVLP 99
[Close]
BLAST of mRNA_C-australica_Contig_10398.1.1 vs. uniprot
Match: A0A2D4S2V2_9GAMM (YCII domain-containing protein n=1 Tax=Bermanella sp. TaxID=2024825 RepID=A0A2D4S2V2_9GAMM)

HSP 1 Score: 150 bits (378), Expect = 8.610e-44
Identity = 74/99 (74.75%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    1 MLYAFISTDVDDSLPRRRTAREAHLARLHELQQQGRLILAGPCPAVDANDPGDNGFTGSLVVAEFDSLADARAWADADPYIEAGVYRDTVVKPFRKVLP 297
            MLYA IS DV DSL +R +AR AHL RL +LQQQGRLILAGP PA+D+ DPG +GFTGSLVVAEFDSL DA+AWAD DPYIEAGVY   +VKPF+KVLP
Sbjct:    1 MLYAIISQDVADSLEKRLSARPAHLERLTDLQQQGRLILAGPHPAIDSEDPGKDGFTGSLVVAEFDSLTDAQAWADKDPYIEAGVYEKVIVKPFKKVLP 99
[Close]
BLAST of mRNA_C-australica_Contig_10398.1.1 vs. uniprot
Match: A0A3M1VC82_9GAMM (YciI family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1VC82_9GAMM)

HSP 1 Score: 148 bits (374), Expect = 3.480e-43
Identity = 69/99 (69.70%), Postives = 85/99 (85.86%), Query Frame = 1 
Query:    1 MLYAFISTDVDDSLPRRRTAREAHLARLHELQQQGRLILAGPCPAVDANDPGDNGFTGSLVVAEFDSLADARAWADADPYIEAGVYRDTVVKPFRKVLP 297
            ML+A I+TDV+DSL +R  AR AH+ RL  L+ +GRL+LAGP PA++A DPG+ GFTGSL+VAEFDSLADARAWADADPY++AGVY D V+KPF+KVLP
Sbjct:    1 MLFAIIATDVEDSLSKRLAARPAHIQRLQALKAEGRLVLAGPHPAIEAEDPGEAGFTGSLIVAEFDSLADARAWADADPYMDAGVYADVVIKPFKKVLP 99
[Close]
BLAST of mRNA_C-australica_Contig_10398.1.1 vs. uniprot
Match: A0A2N1ZWE8_9GAMM (YCII domain-containing protein n=5 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2N1ZWE8_9GAMM)

HSP 1 Score: 148 bits (374), Expect = 3.590e-43
Identity = 72/99 (72.73%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:    1 MLYAFISTDVDDSLPRRRTAREAHLARLHELQQQGRLILAGPCPAVDANDPGDNGFTGSLVVAEFDSLADARAWADADPYIEAGVYRDTVVKPFRKVLP 297
            MLYA ISTD+D+SL +R++AR AHL RL +LQ QGRLILAGP PAVD NDPGD GFTGSLVVAEF  L +A+ WADADPY+EAGVY    VKPF+KVLP
Sbjct:    1 MLYAIISTDIDNSLDKRKSARPAHLFRLQQLQDQGRLILAGPHPAVDCNDPGDAGFTGSLVVAEFADLEEAKQWADADPYLEAGVYAKVTVKPFKKVLP 99
[Close]
BLAST of mRNA_C-australica_Contig_10398.1.1 vs. uniprot
Match: UPI0008D9920A (YciI family protein n=1 Tax=Halofilum ochraceum TaxID=1611323 RepID=UPI0008D9920A)

HSP 1 Score: 148 bits (373), Expect = 5.090e-43
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:    1 MLYAFISTDVDDSLPRRRTAREAHLARLHELQQQGRLILAGPCPAVDANDPGDNGFTGSLVVAEFDSLADARAWADADPYIEAGVYRDTVVKPFRKVLP 297
            MLYA +S DV+DS  RR +AR AHL RL  LQ  GRL+LAGP PA+DA DPGD GFTGSL+VAEFDSL DARAWADADPYIEAGVYR+  VKPF++VLP
Sbjct:    1 MLYAILSEDVEDSGARRASARAAHLERLETLQAAGRLVLAGPHPAIDAADPGDAGFTGSLIVAEFDSLEDARAWADADPYIEAGVYRNVEVKPFKRVLP 99
[Close]
BLAST of mRNA_C-australica_Contig_10398.1.1 vs. uniprot
Match: UPI0019FADC2A (YciI family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019FADC2A)

HSP 1 Score: 147 bits (372), Expect = 7.000e-43
Identity = 75/99 (75.76%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    1 MLYAFISTDVDDSLPRRRTAREAHLARLHELQQQGRLILAGPCPAVDANDPGDNGFTGSLVVAEFDSLADARAWADADPYIEAGVYRDTVVKPFRKVLP 297
            MLYA IS DV DSL RR  AR AHL RL ELQ+QGRLILAGP PA+D+ DPGD+GFTGSLVVAEFD L  A+AWADADPYIEAGVY    VKPF+KVLP
Sbjct:    1 MLYAIISEDVADSLSRRLDARPAHLDRLIELQKQGRLILAGPHPAIDSVDPGDSGFTGSLVVAEFDDLVQAQAWADADPYIEAGVYEKVTVKPFKKVLP 99
[Close]
BLAST of mRNA_C-australica_Contig_10398.1.1 vs. uniprot
Match: A0A0C5VP85_9GAMM (YCII domain-containing protein n=1 Tax=Gynuella sunshinyii YC6258 TaxID=1445510 RepID=A0A0C5VP85_9GAMM)

HSP 1 Score: 147 bits (371), Expect = 9.930e-43
Identity = 66/99 (66.67%), Postives = 85/99 (85.86%), Query Frame = 1 
Query:    1 MLYAFISTDVDDSLPRRRTAREAHLARLHELQQQGRLILAGPCPAVDANDPGDNGFTGSLVVAEFDSLADARAWADADPYIEAGVYRDTVVKPFRKVLP 297
            M YA IS D+D+SL +R++AR AHLARL  L+ +GRL++AGPCPA+D++DPG+ GFTGS+V+AEFDSL  A++WADADPYIEAGVY   +VKPF+KVLP
Sbjct:    1 MFYAIISQDIDNSLEKRKSARPAHLARLEALKSEGRLLIAGPCPAIDSDDPGEAGFTGSVVIAEFDSLEQAKSWADADPYIEAGVYSSVMVKPFKKVLP 99
[Close]
BLAST of mRNA_C-australica_Contig_10398.1.1 vs. uniprot
Match: A0A154C7F0_9GAMM (YCII domain-containing protein n=4 Tax=Alcanivorax TaxID=59753 RepID=A0A154C7F0_9GAMM)

HSP 1 Score: 147 bits (370), Expect = 1.410e-42
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    1 MLYAFISTDVDDSLPRRRTAREAHLARLHELQQQGRLILAGPCPAVDANDPGDNGFTGSLVVAEFDSLADARAWADADPYIEAGVYRDTVVKPFRKVLP 297
            MLYA IS DV DSLP R  AR AHLARL  L+ QGRL+LAGP PAVD+++PG+ GFTGSLVVAEF SLA+A+AWADADPY++AGVYR   VKPF+KVLP
Sbjct:    1 MLYAIISEDVPDSLPLRTPARPAHLARLETLRDQGRLVLAGPLPAVDSDNPGEAGFTGSLVVAEFPSLAEAQAWADADPYVDAGVYRQVQVKPFKKVLP 99
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10398.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7U410_CAPTE1.500e-4470.71YCII domain-containing protein n=3 Tax=cellular or... [more]
UPI000C771C5F3.020e-4471.72YciI family protein n=1 Tax=Endozoicomonas acropor... [more]
A0A142BAU3_9GAMM8.610e-4471.72YCII domain-containing protein n=2 Tax=Endozoicomo... [more]
A0A2D4S2V2_9GAMM8.610e-4474.75YCII domain-containing protein n=1 Tax=Bermanella ... [more]
A0A3M1VC82_9GAMM3.480e-4369.70YciI family protein n=1 Tax=Gammaproteobacteria ba... [more]
A0A2N1ZWE8_9GAMM3.590e-4372.73YCII domain-containing protein n=5 Tax=Gammaproteo... [more]
UPI0008D9920A5.090e-4373.74YciI family protein n=1 Tax=Halofilum ochraceum Ta... [more]
UPI0019FADC2A7.000e-4375.76YciI family protein n=1 Tax=Proteobacteria bacteri... [more]
A0A0C5VP85_9GAMM9.930e-4366.67YCII domain-containing protein n=1 Tax=Gynuella su... [more]
A0A154C7F0_9GAMM1.410e-4272.73YCII domain-containing protein n=4 Tax=Alcanivorax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10398contigC-australica_Contig_10398:104..669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1027273.GZ77_07825
Preferred nameyciI
PFAMsYCII
Model size566
Max annot lvl135619|Oceanospirillales
KEGG koko:K09780
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.73e-46
EggNOG OGsCOG2350@1|root,COG2350@2|Bacteria,1MZ9Z@1224|Proteobacteria,1S8UC@1236|Gammaproteobacteria,1XKEK@135619|Oceanospirillales
DescriptionYciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the
Cds size303
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586776.2313387-CDS-C-australica_Contig_10398:103..4061682586776.2313387-CDS-C-australica_Contig_10398:103..406Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10398 104..406 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586776.243809-UTR-C-australica_Contig_10398:406..6691682586776.243809-UTR-C-australica_Contig_10398:406..669Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10398 407..669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10398.1.1prot_C-australica_Contig_10398.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10398 104..406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10398.1.1

>prot_C-australica_Contig_10398.1.1 ID=prot_C-australica_Contig_10398.1.1|Name=mRNA_C-australica_Contig_10398.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=101bp
MLYAFISTDVDDSLPRRRTAREAHLARLHELQQQGRLILAGPCPAVDAND
PGDNGFTGSLVVAEFDSLADARAWADADPYIEAGVYRDTVVKPFRKVLPA
*
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mRNA from alignment at C-australica_Contig_10398:104..669+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10398.1.1 ID=mRNA_C-australica_Contig_10398.1.1|Name=mRNA_C-australica_Contig_10398.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=566bp|location=Sequence derived from alignment at C-australica_Contig_10398:104..669+ (Chrysoparadoxa australica CS_1217)
ATGCTCTACGCCTTCATCTCCACCGACGTCGACGACAGCCTGCCCCGCCG
CCGCACCGCCCGCGAGGCCCATCTGGCGCGGCTGCACGAGCTGCAGCAAC
AGGGCCGCCTGATCCTGGCCGGGCCCTGTCCGGCGGTCGATGCCAATGAT
CCGGGCGACAACGGCTTCACCGGCAGCCTGGTGGTGGCCGAATTCGACAG
CCTGGCCGACGCCCGGGCCTGGGCCGATGCCGACCCCTATATCGAGGCCG
GCGTCTACCGGGACACCGTGGTCAAGCCCTTCCGCAAGGTGCTGCCGGCG
TGACGGCAGAGCGCGTCCAGCGTATTCGCGAAGCCCTGATCGCGGAACTG
GCCCCGGACGAGATCGACGTGATCGACGAAGGCCACAAGCATATCGGCCA
CGCCGGGGCCCGTAGCGGTCTCGGTCATTTCGCGGTGGTGATCCGCTCCG
CCCGGTTCACCGGGCACAGCCTGCTGGCACGCCATCGCCTGGTTTACGAC
GCCCTCGGCGACATGATGAGGACCGACATCCATGCTGTATCCATCCGCGC
CCTGGCGCCCGACGAC
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Coding sequence (CDS) from alignment at C-australica_Contig_10398:104..669+

>mRNA_C-australica_Contig_10398.1.1 ID=mRNA_C-australica_Contig_10398.1.1|Name=mRNA_C-australica_Contig_10398.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=303bp|location=Sequence derived from alignment at C-australica_Contig_10398:104..669+ (Chrysoparadoxa australica CS_1217)
ATGCTCTACGCCTTCATCTCCACCGACGTCGACGACAGCCTGCCCCGCCG
CCGCACCGCCCGCGAGGCCCATCTGGCGCGGCTGCACGAGCTGCAGCAAC
AGGGCCGCCTGATCCTGGCCGGGCCCTGTCCGGCGGTCGATGCCAATGAT
CCGGGCGACAACGGCTTCACCGGCAGCCTGGTGGTGGCCGAATTCGACAG
CCTGGCCGACGCCCGGGCCTGGGCCGATGCCGACCCCTATATCGAGGCCG
GCGTCTACCGGGACACCGTGGTCAAGCCCTTCCGCAAGGTGCTGCCGGCG
TGA
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