mRNA_C-australica_Contig_10394.1.1 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A222E2T9_9RHOB (High-affinity branched-chain amino acid transport system permease protein LivH n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A222E2T9_9RHOB) HSP 1 Score: 418 bits (1074), Expect = 3.200e-146 Identity = 223/225 (99.11%), Postives = 224/225 (99.56%), Query Frame = 1
Query: 1 MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIFA 675
MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSI+LM DLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIFA
Sbjct: 1 MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSINLMDDLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIFA 225
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A418ZYE0_9RHOB (Branched-chain amino acid ABC transporter permease n=1 Tax=Paracoccus aestuarii TaxID=453842 RepID=A0A418ZYE0_9RHOB) HSP 1 Score: 334 bits (856), Expect = 4.800e-113 Identity = 172/225 (76.44%), Postives = 193/225 (85.78%), Query Frame = 1
Query: 1 MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIFA 675
M FF EQL IGLS GGIYAI+AL+LV+IYKSTGHVNLAQGEMAVFSTF+AWTLV GVP+W AI +T+ SF GA+ LER+VVRPF A+DLVVVAVFVGLFL IHS+ G IW Y+VKPFPSAF +G++ LM L+IR HTLGSLLTT VL A WFFF+YTR GLALRA ADNH+SSRL G+NVS+MLALGWGLAA IGAVAGVMIAPVTFLDP +GLAPLIFA
Sbjct: 1 MIFFFEQLFIGLSLGGIYAILALSLVVIYKSTGHVNLAQGEMAVFSTFLAWTLVHAGVPVWAAIPMTMVASFFGAIALERLVVRPFNGANDLVVVAVFVGLFLGIHSIVGAIWKYDVKPFPSAFPNGAVDLMGGLTIRIHTLGSLLTTFLVLAATWFFFKYTRTGLALRAVADNHQSSRLSGVNVSLMLALGWGLAAAIGAVAGVMIAPVTFLDPSIGLAPLIFA 225
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A2P8KGW1_9BURK (Branched-chain amino acid ABC transporter permease n=1 Tax=Variovorax sp. WS11 TaxID=1105204 RepID=A0A2P8KGW1_9BURK) HSP 1 Score: 249 bits (637), Expect = 8.370e-80 Identity = 126/220 (57.27%), Postives = 165/220 (75.00%), Query Frame = 1
Query: 13 LEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIF 672
LEQL+ +S GGIYA +ALALVMIYKSTGHVNLAQGEMA STF+AW+L+Q GVPIWPA LT+ ++ V LER+VVRPF + +VV VFVGLF+ ++S++G +W Y +PFPSAF DG++ L L ++ H LGS+L + VL+A++ FFR+T GL++R AADN SSRL+GI ML LGW ++ +GAVAG+M+AP+TFLDP M PL+F
Sbjct: 5 LEQLLPAISLGGIYASLALALVMIYKSTGHVNLAQGEMATISTFVAWSLLQAGVPIWPAFGLTLVIAAVFGAGLERLVVRPFKAQPEAIVVTVFVGLFVLLNSVSGGVWGYTARPFPSAFPDGAVELAGGLRVKWHLLGSMLVSAGVLSAMFLFFRFTATGLSMRGAADNPASSRLLGIRTDRMLGLGWAISGVVGAVAGIMMAPITFLDPHMMTGPLVF 224
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A286IEA6_9HYPH (Amino acid/amide ABC transporter membrane protein 1 (HAAT family) n=3 Tax=Hoeflea TaxID=274591 RepID=A0A286IEA6_9HYPH) HSP 1 Score: 234 bits (598), Expect = 6.300e-74 Identity = 125/219 (57.08%), Postives = 164/219 (74.89%), Query Frame = 1
Query: 16 EQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIF 672
+QLI G+++GGIYA MALA+VMIY++ H+N AQGEMA+FSTFIAW ++ GVP W I LTVA+SFVG V +ER+V+RP A L + VF+GLF I+SLAG IW++ +KPFPSAF +GS L I H LG + T VL ++ FFRYTR+GLA+RAAA+N S+RLVGI V M+ALGWG+AA IGA+AG++IAP+ FL+P M L+ L++
Sbjct: 6 QQLITGIATGGIYACMALAVVMIYQAIHHLNFAQGEMAMFSTFIAWQMLAWGVPYWLVIPLTVALSFVGGVAIERLVIRPLGDAPVLSHIVVFIGLFAIINSLAGFIWDFTIKPFPSAFGEGS--RFGGL-ISNHQLGMIAVTMTVLLMLFLFFRYTRVGLAMRAAAENPASARLVGIRVGWMIALGWGMAAAIGAIAGILIAPIVFLEPNMMLSILLY 221
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A522M005_9BURK (Branched-chain amino acid ABC transporter permease n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A522M005_9BURK) HSP 1 Score: 233 bits (593), Expect = 3.380e-73 Identity = 123/225 (54.67%), Postives = 166/225 (73.78%), Query Frame = 1
Query: 1 MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIFA 675
M L Q++ GL++GGIYA +ALALVMIY++T VN AQGEMA+F+T+IAW+L+Q G+P W A LTV ++FVG VV+ERV++RP A L VV VF+GL + +SLAG I++Y +KPFPS F + L + + + LG++ T +L ++ FFR+TRLGLA+RAAA N ESSRLVG+ V MLALGWGLA+ IGAVAG+M+AP+ FLDP M + L++A
Sbjct: 1 MNLLLHQILSGLATGGIYASVALALVMIYQATQLVNFAQGEMAMFATYIAWSLIQAGIPYWAAFFLTVVIAFVGGVVIERVIIRPVENAPILAVVIVFIGLLVIFNSLAGWIYSYTIKPFPSPFPERP--LFGNSYVSSQELGAIGVTLVMLVLLFIFFRFTRLGLAMRAAAQNAESSRLVGVRVGWMLALGWGLASAIGAVAGMMVAPIVFLDPNMMMGILLYA 223
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A537D0C1_9PROT (Branched-chain amino acid ABC transporter permease n=5 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537D0C1_9PROT) HSP 1 Score: 230 bits (587), Expect = 2.820e-72 Identity = 126/222 (56.76%), Postives = 165/222 (74.32%), Query Frame = 1
Query: 10 FLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIFA 675
FL Q++ GL++GGIYA +ALALVMIY++T VN AQGEMA+FST+IAW+L+ G+P WPA LLTV ++F+ +++ER+VVRP A LVVV VF+GL + ++S+AG I+ Y +K FPS F I + I AH LG++ T AVL ++ FFR+T LGLA+RAAA N ESSRLVGI V MLALGWGLAA +GAVAG+M+APV +LDP M L++A
Sbjct: 4 FLHQVLAGLATGGIYASLALALVMIYQATHLVNFAQGEMAMFSTYIAWSLINAGMPYWPAFLLTVGIAFILGILIERIVVRPVENAPVLVVVVVFIGLLVILNSVAGWIYTYTIKSFPSPFPRQPI--LGIHYISAHELGAIGVTLAVLALLYAFFRFTPLGLAMRAAAQNPESSRLVGIRVGWMLALGWGLAASVGAVAGMMVAPVVYLDPNMMSGILLYA 223
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A2G1QPE7_9HYPH (Branched-chain amino acid ABC transporter permease n=1 Tax=Zhengella mangrovi TaxID=1982044 RepID=A0A2G1QPE7_9HYPH) HSP 1 Score: 229 bits (585), Expect = 6.010e-72 Identity = 122/221 (55.20%), Postives = 163/221 (73.76%), Query Frame = 1
Query: 10 FLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIF 672
F +Q++ G+++GGIYA MALA+VMIY++ H+NLAQGEMA+FSTFIAW L+Q G P W A +LT+ +SF G ++ERVV++P A L + +F+ L+ +SLAG IW++ VKPFPS F G+ +L + I AH G +L T VL ++ FFRYTR+GLA+RAAA N ES+RLVGI V M ALGWG+AA IGAVAG+MIAPV FL+P M L+ L++
Sbjct: 4 FFQQVLGGIATGGIYACMALAVVMIYQAIHHLNLAQGEMAMFSTFIAWQLLQWGFPYWAAFVLTLGISFAGGFLIERVVLKPLENAPVLSHLVIFIALYAIFNSLAGFIWDFTVKPFPSPF--GTAALFGEGLIGAHQAGMILVTLIVLFLLFAFFRYTRVGLAMRAAAANPESARLVGIRVGTMAALGWGMAASIGAVAGIMIAPVVFLEPNMMLSILLY 222
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A1M2YSI4_9HYPH (Branched-chain amino acid ABC transporter permease n=1 Tax=Rhizobiales bacterium 65-79 TaxID=1895815 RepID=A0A1M2YSI4_9HYPH) HSP 1 Score: 229 bits (583), Expect = 1.170e-71 Identity = 121/226 (53.54%), Postives = 165/226 (73.01%), Query Frame = 1
Query: 1 MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSI--SLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIF 672
M F++Q++ G+++G IYA MALA+VMIY++ ++N AQGEMA+FSTFIAW L+ G P W A LT+A+SF+G VV+ER+V +P A L V VF+ LF +SLAG IWN+E+KPFP+ F G++ LM+ H G ++ T VL ++FFFR+TR+GLA+RAAA N ES+RLVGI VS M ALGWG+A+ IGAVAG+MIAPV FL+P M ++ L++
Sbjct: 1 MEIFIQQIVSGIATGAIYACMALAIVMIYQAIHNLNFAQGEMAMFSTFIAWQLIAWGTPYWIAFALTLAISFIGGVVIERLVFKPIENAPILSYVVVFIALFAIFNSLAGFIWNFEIKPFPTPFGSGALFGGLMSP-----HQAGMIVVTVVVLALLYFFFRFTRIGLAMRAAAVNPESARLVGIRVSWMTALGWGMASAIGAVAGMMIAPVVFLEPNMMVSILLY 221
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A1Y6BJH8_9HYPH (Amino acid/amide ABC transporter membrane protein 1, HAAT family n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6BJH8_9HYPH) HSP 1 Score: 228 bits (582), Expect = 1.660e-71 Identity = 119/224 (53.12%), Postives = 167/224 (74.55%), Query Frame = 1
Query: 1 MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIF 672
M ++QL+ G+++GGIYA MALA+VMIY++ H+N +QGEMA+FSTF+AW L+Q G+P W + LTVAVSF G + +ER+V+RP +A L +AVF+GLF I+SLAG IW++ +KPFPS F +GS + L I H +G + T VL ++ FFRYTR+GLA+RAAA+N S+RLVGI V +ALGWG+AA IG++AG++IAP+ FL+P M L+ L++
Sbjct: 1 MELLIQQLVTGIATGGIYACMALAVVMIYQAIHHLNFSQGEMAMFSTFVAWQLLQWGLPYWAVLPLTVAVSFAGGMAIERLVIRPLGQAPILSHIAVFIGLFAVINSLAGFIWDFTIKPFPSPFGEGS--QLGGL-ISNHQIGMIGVTLVVLLFLYLFFRYTRIGLAMRAAAENPASARLVGIRVGRTVALGWGMAAAIGSIAGILIAPLVFLEPNMMLSILLY 221
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A1Q4C2T0_9HYPH (Branched-chain amino acid ABC transporter permease n=1 Tax=Rhizobiales bacterium 62-47 TaxID=1895811 RepID=A0A1Q4C2T0_9HYPH) HSP 1 Score: 228 bits (581), Expect = 2.420e-71 Identity = 120/224 (53.57%), Postives = 166/224 (74.11%), Query Frame = 1
Query: 1 MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIF 672
M F+ Q++ G+++G IYA MALA+VMI+++ H+N AQGEMA+FSTFIAW L+Q GVP W A LLT+A+SFV +V+ER++ +P AKA L VA F+ L+ I+S+AG+IW++ +K FPS F GS + I H G + T A+L A++FFFR+TR+GLA+RAAA ES+RLVGIN S M+ALGWG+A+ IGA+AG++IAPV FL+P M L L++
Sbjct: 1 MELFINQVLAGIATGAIYACMALAIVMIFQAIDHLNFAQGEMAMFSTFIAWQLMQWGVPYWWAFLLTLAISFVAGIVIERLLFKPLAKAPILTNVAGFIALYAIINSVAGLIWDFTIKQFPSPF--GSSPFLGSQLISTHQAGMIGVTIALLIALFFFFRFTRIGLAMRAAATLPESARLVGINTSWMIALGWGMASAIGAIAGILIAPVVFLEPNMMLGILLY 222 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10394.1.1 >prot_C-australica_Contig_10394.1.1 ID=prot_C-australica_Contig_10394.1.1|Name=mRNA_C-australica_Contig_10394.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=225bp MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAback to top mRNA from alignment at C-australica_Contig_10394:149..823+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10394.1.1 ID=mRNA_C-australica_Contig_10394.1.1|Name=mRNA_C-australica_Contig_10394.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=675bp|location=Sequence derived from alignment at C-australica_Contig_10394:149..823+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10394:149..823+ >mRNA_C-australica_Contig_10394.1.1 ID=mRNA_C-australica_Contig_10394.1.1|Name=mRNA_C-australica_Contig_10394.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=675bp|location=Sequence derived from alignment at C-australica_Contig_10394:149..823+ (Chrysoparadoxa australica CS_1217)back to top |