mRNA_C-australica_Contig_10394.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10394.1.1
Unique NamemRNA_C-australica_Contig_10394.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A222E2T9_9RHOB (High-affinity branched-chain amino acid transport system permease protein LivH n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A222E2T9_9RHOB)

HSP 1 Score: 418 bits (1074), Expect = 3.200e-146
Identity = 223/225 (99.11%), Postives = 224/225 (99.56%), Query Frame = 1
Query:    1 MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIFA 675
            MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSI+LM DLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIFA
Sbjct:    1 MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSINLMDDLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIFA 225          
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A418ZYE0_9RHOB (Branched-chain amino acid ABC transporter permease n=1 Tax=Paracoccus aestuarii TaxID=453842 RepID=A0A418ZYE0_9RHOB)

HSP 1 Score: 334 bits (856), Expect = 4.800e-113
Identity = 172/225 (76.44%), Postives = 193/225 (85.78%), Query Frame = 1
Query:    1 MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIFA 675
            M FF EQL IGLS GGIYAI+AL+LV+IYKSTGHVNLAQGEMAVFSTF+AWTLV  GVP+W AI +T+  SF GA+ LER+VVRPF  A+DLVVVAVFVGLFL IHS+ G IW Y+VKPFPSAF +G++ LM  L+IR HTLGSLLTT  VL A WFFF+YTR GLALRA ADNH+SSRL G+NVS+MLALGWGLAA IGAVAGVMIAPVTFLDP +GLAPLIFA
Sbjct:    1 MIFFFEQLFIGLSLGGIYAILALSLVVIYKSTGHVNLAQGEMAVFSTFLAWTLVHAGVPVWAAIPMTMVASFFGAIALERLVVRPFNGANDLVVVAVFVGLFLGIHSIVGAIWKYDVKPFPSAFPNGAVDLMGGLTIRIHTLGSLLTTFLVLAATWFFFKYTRTGLALRAVADNHQSSRLSGVNVSLMLALGWGLAAAIGAVAGVMIAPVTFLDPSIGLAPLIFA 225          
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A2P8KGW1_9BURK (Branched-chain amino acid ABC transporter permease n=1 Tax=Variovorax sp. WS11 TaxID=1105204 RepID=A0A2P8KGW1_9BURK)

HSP 1 Score: 249 bits (637), Expect = 8.370e-80
Identity = 126/220 (57.27%), Postives = 165/220 (75.00%), Query Frame = 1
Query:   13 LEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIF 672
            LEQL+  +S GGIYA +ALALVMIYKSTGHVNLAQGEMA  STF+AW+L+Q GVPIWPA  LT+ ++ V    LER+VVRPF    + +VV VFVGLF+ ++S++G +W Y  +PFPSAF DG++ L   L ++ H LGS+L +  VL+A++ FFR+T  GL++R AADN  SSRL+GI    ML LGW ++  +GAVAG+M+AP+TFLDP M   PL+F
Sbjct:    5 LEQLLPAISLGGIYASLALALVMIYKSTGHVNLAQGEMATISTFVAWSLLQAGVPIWPAFGLTLVIAAVFGAGLERLVVRPFKAQPEAIVVTVFVGLFVLLNSVSGGVWGYTARPFPSAFPDGAVELAGGLRVKWHLLGSMLVSAGVLSAMFLFFRFTATGLSMRGAADNPASSRLLGIRTDRMLGLGWAISGVVGAVAGIMMAPITFLDPHMMTGPLVF 224          
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A286IEA6_9HYPH (Amino acid/amide ABC transporter membrane protein 1 (HAAT family) n=3 Tax=Hoeflea TaxID=274591 RepID=A0A286IEA6_9HYPH)

HSP 1 Score: 234 bits (598), Expect = 6.300e-74
Identity = 125/219 (57.08%), Postives = 164/219 (74.89%), Query Frame = 1
Query:   16 EQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIF 672
            +QLI G+++GGIYA MALA+VMIY++  H+N AQGEMA+FSTFIAW ++  GVP W  I LTVA+SFVG V +ER+V+RP   A  L  + VF+GLF  I+SLAG IW++ +KPFPSAF +GS      L I  H LG +  T  VL  ++ FFRYTR+GLA+RAAA+N  S+RLVGI V  M+ALGWG+AA IGA+AG++IAP+ FL+P M L+ L++
Sbjct:    6 QQLITGIATGGIYACMALAVVMIYQAIHHLNFAQGEMAMFSTFIAWQMLAWGVPYWLVIPLTVALSFVGGVAIERLVIRPLGDAPVLSHIVVFIGLFAIINSLAGFIWDFTIKPFPSAFGEGS--RFGGL-ISNHQLGMIAVTMTVLLMLFLFFRYTRVGLAMRAAAENPASARLVGIRVGWMIALGWGMAAAIGAIAGILIAPIVFLEPNMMLSILLY 221          
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A522M005_9BURK (Branched-chain amino acid ABC transporter permease n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A522M005_9BURK)

HSP 1 Score: 233 bits (593), Expect = 3.380e-73
Identity = 123/225 (54.67%), Postives = 166/225 (73.78%), Query Frame = 1
Query:    1 MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIFA 675
            M   L Q++ GL++GGIYA +ALALVMIY++T  VN AQGEMA+F+T+IAW+L+Q G+P W A  LTV ++FVG VV+ERV++RP   A  L VV VF+GL +  +SLAG I++Y +KPFPS F +    L  +  + +  LG++  T  +L  ++ FFR+TRLGLA+RAAA N ESSRLVG+ V  MLALGWGLA+ IGAVAG+M+AP+ FLDP M +  L++A
Sbjct:    1 MNLLLHQILSGLATGGIYASVALALVMIYQATQLVNFAQGEMAMFATYIAWSLIQAGIPYWAAFFLTVVIAFVGGVVIERVIIRPVENAPILAVVIVFIGLLVIFNSLAGWIYSYTIKPFPSPFPERP--LFGNSYVSSQELGAIGVTLVMLVLLFIFFRFTRLGLAMRAAAQNAESSRLVGVRVGWMLALGWGLASAIGAVAGMMVAPIVFLDPNMMMGILLYA 223          
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A537D0C1_9PROT (Branched-chain amino acid ABC transporter permease n=5 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537D0C1_9PROT)

HSP 1 Score: 230 bits (587), Expect = 2.820e-72
Identity = 126/222 (56.76%), Postives = 165/222 (74.32%), Query Frame = 1
Query:   10 FLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIFA 675
            FL Q++ GL++GGIYA +ALALVMIY++T  VN AQGEMA+FST+IAW+L+  G+P WPA LLTV ++F+  +++ER+VVRP   A  LVVV VF+GL + ++S+AG I+ Y +K FPS F    I  +    I AH LG++  T AVL  ++ FFR+T LGLA+RAAA N ESSRLVGI V  MLALGWGLAA +GAVAG+M+APV +LDP M    L++A
Sbjct:    4 FLHQVLAGLATGGIYASLALALVMIYQATHLVNFAQGEMAMFSTYIAWSLINAGMPYWPAFLLTVGIAFILGILIERIVVRPVENAPVLVVVVVFIGLLVILNSVAGWIYTYTIKSFPSPFPRQPI--LGIHYISAHELGAIGVTLAVLALLYAFFRFTPLGLAMRAAAQNPESSRLVGIRVGWMLALGWGLAASVGAVAGMMVAPVVYLDPNMMSGILLYA 223          
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A2G1QPE7_9HYPH (Branched-chain amino acid ABC transporter permease n=1 Tax=Zhengella mangrovi TaxID=1982044 RepID=A0A2G1QPE7_9HYPH)

HSP 1 Score: 229 bits (585), Expect = 6.010e-72
Identity = 122/221 (55.20%), Postives = 163/221 (73.76%), Query Frame = 1
Query:   10 FLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIF 672
            F +Q++ G+++GGIYA MALA+VMIY++  H+NLAQGEMA+FSTFIAW L+Q G P W A +LT+ +SF G  ++ERVV++P   A  L  + +F+ L+   +SLAG IW++ VKPFPS F  G+ +L  +  I AH  G +L T  VL  ++ FFRYTR+GLA+RAAA N ES+RLVGI V  M ALGWG+AA IGAVAG+MIAPV FL+P M L+ L++
Sbjct:    4 FFQQVLGGIATGGIYACMALAVVMIYQAIHHLNLAQGEMAMFSTFIAWQLLQWGFPYWAAFVLTLGISFAGGFLIERVVLKPLENAPVLSHLVIFIALYAIFNSLAGFIWDFTVKPFPSPF--GTAALFGEGLIGAHQAGMILVTLIVLFLLFAFFRYTRVGLAMRAAAANPESARLVGIRVGTMAALGWGMAASIGAVAGIMIAPVVFLEPNMMLSILLY 222          
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A1M2YSI4_9HYPH (Branched-chain amino acid ABC transporter permease n=1 Tax=Rhizobiales bacterium 65-79 TaxID=1895815 RepID=A0A1M2YSI4_9HYPH)

HSP 1 Score: 229 bits (583), Expect = 1.170e-71
Identity = 121/226 (53.54%), Postives = 165/226 (73.01%), Query Frame = 1
Query:    1 MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSI--SLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIF 672
            M  F++Q++ G+++G IYA MALA+VMIY++  ++N AQGEMA+FSTFIAW L+  G P W A  LT+A+SF+G VV+ER+V +P   A  L  V VF+ LF   +SLAG IWN+E+KPFP+ F  G++   LM+      H  G ++ T  VL  ++FFFR+TR+GLA+RAAA N ES+RLVGI VS M ALGWG+A+ IGAVAG+MIAPV FL+P M ++ L++
Sbjct:    1 MEIFIQQIVSGIATGAIYACMALAIVMIYQAIHNLNFAQGEMAMFSTFIAWQLIAWGTPYWIAFALTLAISFIGGVVIERLVFKPIENAPILSYVVVFIALFAIFNSLAGFIWNFEIKPFPTPFGSGALFGGLMSP-----HQAGMIVVTVVVLALLYFFFRFTRIGLAMRAAAVNPESARLVGIRVSWMTALGWGMASAIGAVAGMMIAPVVFLEPNMMVSILLY 221          
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A1Y6BJH8_9HYPH (Amino acid/amide ABC transporter membrane protein 1, HAAT family n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6BJH8_9HYPH)

HSP 1 Score: 228 bits (582), Expect = 1.660e-71
Identity = 119/224 (53.12%), Postives = 167/224 (74.55%), Query Frame = 1
Query:    1 MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIF 672
            M   ++QL+ G+++GGIYA MALA+VMIY++  H+N +QGEMA+FSTF+AW L+Q G+P W  + LTVAVSF G + +ER+V+RP  +A  L  +AVF+GLF  I+SLAG IW++ +KPFPS F +GS   +  L I  H +G +  T  VL  ++ FFRYTR+GLA+RAAA+N  S+RLVGI V   +ALGWG+AA IG++AG++IAP+ FL+P M L+ L++
Sbjct:    1 MELLIQQLVTGIATGGIYACMALAVVMIYQAIHHLNFSQGEMAMFSTFVAWQLLQWGLPYWAVLPLTVAVSFAGGMAIERLVIRPLGQAPILSHIAVFIGLFAVINSLAGFIWDFTIKPFPSPFGEGS--QLGGL-ISNHQIGMIGVTLVVLLFLYLFFRYTRIGLAMRAAAENPASARLVGIRVGRTVALGWGMAAAIGSIAGILIAPLVFLEPNMMLSILLY 221          
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Match: A0A1Q4C2T0_9HYPH (Branched-chain amino acid ABC transporter permease n=1 Tax=Rhizobiales bacterium 62-47 TaxID=1895811 RepID=A0A1Q4C2T0_9HYPH)

HSP 1 Score: 228 bits (581), Expect = 2.420e-71
Identity = 120/224 (53.57%), Postives = 166/224 (74.11%), Query Frame = 1
Query:    1 MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIAWTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVGLFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGAVLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIGAVAGVMIAPVTFLDPGMGLAPLIF 672
            M  F+ Q++ G+++G IYA MALA+VMI+++  H+N AQGEMA+FSTFIAW L+Q GVP W A LLT+A+SFV  +V+ER++ +P AKA  L  VA F+ L+  I+S+AG+IW++ +K FPS F  GS   +    I  H  G +  T A+L A++FFFR+TR+GLA+RAAA   ES+RLVGIN S M+ALGWG+A+ IGA+AG++IAPV FL+P M L  L++
Sbjct:    1 MELFINQVLAGIATGAIYACMALAIVMIFQAIDHLNFAQGEMAMFSTFIAWQLMQWGVPYWWAFLLTLAISFVAGIVIERLLFKPLAKAPILTNVAGFIALYAIINSVAGLIWDFTIKQFPSPF--GSSPFLGSQLISTHQAGMIGVTIALLIALFFFFRFTRIGLAMRAAATLPESARLVGINTSWMIALGWGMASAIGAIAGILIAPVVFLEPNMMLGILLY 222          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10394.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E2T9_9RHOB3.200e-14699.11High-affinity branched-chain amino acid transport ... [more]
A0A418ZYE0_9RHOB4.800e-11376.44Branched-chain amino acid ABC transporter permease... [more]
A0A2P8KGW1_9BURK8.370e-8057.27Branched-chain amino acid ABC transporter permease... [more]
A0A286IEA6_9HYPH6.300e-7457.08Amino acid/amide ABC transporter membrane protein ... [more]
A0A522M005_9BURK3.380e-7354.67Branched-chain amino acid ABC transporter permease... [more]
A0A537D0C1_9PROT2.820e-7256.76Branched-chain amino acid ABC transporter permease... [more]
A0A2G1QPE7_9HYPH6.010e-7255.20Branched-chain amino acid ABC transporter permease... [more]
A0A1M2YSI4_9HYPH1.170e-7153.54Branched-chain amino acid ABC transporter permease... [more]
A0A1Y6BJH8_9HYPH1.660e-7153.13Amino acid/amide ABC transporter membrane protein ... [more]
A0A1Q4C2T0_9HYPH2.420e-7153.57Branched-chain amino acid ABC transporter permease... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10394contigC-australica_Contig_10394:149..823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog338969.Rfer_1003
PFAMsBPD_transp_2
Model size675
Max annot lvl28216|Betaproteobacteria
KEGG koko:K01997
KEGG TC3.A.1.4
KEGG Pathwayko02010,ko02024,map02010,map02024
KEGG ModuleM00237
Hectar predicted targeting categorysignal anchor
Exons1
Evalue8.56e-71
EggNOG OGsCOG0559@1|root,COG0559@2|Bacteria,1MXGK@1224|Proteobacteria,2VPMF@28216|Betaproteobacteria,4ABNU@80864|Comamonadaceae
DescriptionBranched-chain amino acid transport system / permease component
Cds size675
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586776.1040843-CDS-C-australica_Contig_10394:148..8231682586776.1040843-CDS-C-australica_Contig_10394:148..823Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10394 149..823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10394.1.1prot_C-australica_Contig_10394.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10394 149..823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10394.1.1

>prot_C-australica_Contig_10394.1.1 ID=prot_C-australica_Contig_10394.1.1|Name=mRNA_C-australica_Contig_10394.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=225bp
MTFFLEQLIIGLSSGGIYAIMALALVMIYKSTGHVNLAQGEMAVFSTFIA
WTLVQMGVPIWPAILLTVAVSFVGAVVLERVVVRPFAKADDLVVVAVFVG
LFLSIHSLAGVIWNYEVKPFPSAFSDGSISLMADLSIRAHTLGSLLTTGA
VLTAVWFFFRYTRLGLALRAAADNHESSRLVGINVSVMLALGWGLAAGIG
AVAGVMIAPVTFLDPGMGLAPLIFA
back to top

mRNA from alignment at C-australica_Contig_10394:149..823+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10394.1.1 ID=mRNA_C-australica_Contig_10394.1.1|Name=mRNA_C-australica_Contig_10394.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=675bp|location=Sequence derived from alignment at C-australica_Contig_10394:149..823+ (Chrysoparadoxa australica CS_1217)
ATGACCTTTTTTCTCGAACAACTCATCATCGGCCTGTCCTCGGGCGGCAT CTACGCGATCATGGCGCTGGCCCTGGTGATGATCTACAAATCCACCGGCC ACGTGAACCTGGCGCAGGGCGAAATGGCGGTGTTCTCCACCTTCATCGCT TGGACGCTGGTGCAGATGGGCGTGCCGATCTGGCCTGCGATCCTTTTGAC GGTGGCCGTCTCTTTCGTCGGCGCCGTCGTGCTGGAACGTGTCGTCGTCC GGCCCTTTGCCAAGGCCGATGATCTTGTGGTCGTGGCTGTATTCGTGGGG CTGTTTCTCAGCATCCACAGCCTCGCTGGCGTGATCTGGAACTACGAGGT CAAACCCTTCCCCAGCGCCTTTTCCGACGGCTCCATCAGCCTGATGGCAG ATTTGTCGATCCGCGCGCATACCCTGGGGTCGCTGCTGACCACCGGGGCG GTGCTGACGGCGGTGTGGTTCTTCTTCCGCTACACACGCCTCGGCCTCGC GCTGCGGGCGGCGGCGGACAACCACGAAAGCAGCCGCCTTGTGGGCATCA ACGTGTCGGTCATGCTGGCGCTTGGCTGGGGGCTGGCGGCGGGGATCGGC GCGGTGGCGGGCGTGATGATCGCGCCGGTGACCTTCCTCGATCCCGGCAT GGGCCTCGCGCCGCTGATCTTTGCC
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_10394:149..823+

>mRNA_C-australica_Contig_10394.1.1 ID=mRNA_C-australica_Contig_10394.1.1|Name=mRNA_C-australica_Contig_10394.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=675bp|location=Sequence derived from alignment at C-australica_Contig_10394:149..823+ (Chrysoparadoxa australica CS_1217)
ATGACCTTTTTTCTCGAACAACTCATCATCGGCCTGTCCTCGGGCGGCAT
CTACGCGATCATGGCGCTGGCCCTGGTGATGATCTACAAATCCACCGGCC
ACGTGAACCTGGCGCAGGGCGAAATGGCGGTGTTCTCCACCTTCATCGCT
TGGACGCTGGTGCAGATGGGCGTGCCGATCTGGCCTGCGATCCTTTTGAC
GGTGGCCGTCTCTTTCGTCGGCGCCGTCGTGCTGGAACGTGTCGTCGTCC
GGCCCTTTGCCAAGGCCGATGATCTTGTGGTCGTGGCTGTATTCGTGGGG
CTGTTTCTCAGCATCCACAGCCTCGCTGGCGTGATCTGGAACTACGAGGT
CAAACCCTTCCCCAGCGCCTTTTCCGACGGCTCCATCAGCCTGATGGCAG
ATTTGTCGATCCGCGCGCATACCCTGGGGTCGCTGCTGACCACCGGGGCG
GTGCTGACGGCGGTGTGGTTCTTCTTCCGCTACACACGCCTCGGCCTCGC
GCTGCGGGCGGCGGCGGACAACCACGAAAGCAGCCGCCTTGTGGGCATCA
ACGTGTCGGTCATGCTGGCGCTTGGCTGGGGGCTGGCGGCGGGGATCGGC
GCGGTGGCGGGCGTGATGATCGCGCCGGTGACCTTCCTCGATCCCGGCAT
GGGCCTCGCGCCGCTGATCTTTGCC
back to top