mRNA_C-australica_Contig_10393.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10393.2.1
Unique NamemRNA_C-australica_Contig_10393.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_10393.2.1 vs. uniprot
Match: A0A2E3XVD8_9PROT (Crp/Fnr family transcriptional regulator n=1 Tax=Halobacteriovoraceae bacterium TaxID=2026745 RepID=A0A2E3XVD8_9PROT)

HSP 1 Score: 168 bits (425), Expect = 1.360e-50
Identity = 75/96 (78.12%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:    4 KKNQQNCSECASVSKGVFCELSRDDLQDVSEHKVTNTYKKGQTLFVQGNHPFGLYCVSTGNIKITKIGADGKESIVRIASAGDVLGHRSLFTDQFY 291
            KK   +C  C SVSKG+FC+L+ D+L++VS+HKVTN YKKGQTLFVQGNHPFGLYC+STGNIK+TK+G DGKESIVRIASAGDVLGHRSLFTDQ+Y
Sbjct:    4 KKIDNSCENCPSVSKGIFCQLAYDELKEVSDHKVTNVYKKGQTLFVQGNHPFGLYCISTGNIKVTKVGNDGKESIVRIASAGDVLGHRSLFTDQYY 99
[Close]
BLAST of mRNA_C-australica_Contig_10393.2.1 vs. uniprot
Match: A0A2D5YL90_9PROT (Crp/Fnr family transcriptional regulator n=1 Tax=Halobacteriovorax sp. TaxID=2020862 RepID=A0A2D5YL90_9PROT)

HSP 1 Score: 156 bits (394), Expect = 8.380e-46
Identity = 68/95 (71.58%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    7 KNQQNCSECASVSKGVFCELSRDDLQDVSEHKVTNTYKKGQTLFVQGNHPFGLYCVSTGNIKITKIGADGKESIVRIASAGDVLGHRSLFTDQFY 291
            K    C  C S  KG+FCEL  +DL D+S+HKVTNTYKKGQTLFVQGNHPFGLYC+++GNIK+TK GADGKE+IVR+A  GDVLGHRSLFT+ FY
Sbjct:   14 KEADKCQSCPSRGKGIFCELENNDLDDLSQHKVTNTYKKGQTLFVQGNHPFGLYCINSGNIKVTKTGADGKETIVRVAQGGDVLGHRSLFTNDFY 108
[Close]
BLAST of mRNA_C-australica_Contig_10393.2.1 vs. uniprot
Match: A0A1J5KYG4_9PROT (Uncharacterized protein n=1 Tax=Bacteriovorax sp. MedPE-SWde TaxID=1860085 RepID=A0A1J5KYG4_9PROT)

HSP 1 Score: 153 bits (386), Expect = 1.080e-44
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:    7 KNQQNCSECASVSKGVFCELSRDDLQDVSEHKVTNTYKKGQTLFVQGNHPFGLYCVSTGNIKITKIGADGKESIVRIASAGDVLGHRSLFTDQFY 291
            K Q+ C  C S  +GVFC+L   DL ++S+HKVTNTYKKGQTLFVQGNHPFGLYCV++GNIK+TK G DGKESIVRI   GDVLGHRSLFT  +Y
Sbjct:    5 KEQEKCQNCPSKGQGVFCDLDNPDLDEISQHKVTNTYKKGQTLFVQGNHPFGLYCVNSGNIKVTKTGTDGKESIVRIVKGGDVLGHRSLFTSDYY 99
[Close]
BLAST of mRNA_C-australica_Contig_10393.2.1 vs. uniprot
Match: A0A2H0QGH2_9PROT (Crp/Fnr family transcriptional regulator n=1 Tax=Bdellovibrio sp. CG11_big_fil_rev_8_21_14_0_20_39_38 TaxID=1975527 RepID=A0A2H0QGH2_9PROT)

HSP 1 Score: 153 bits (386), Expect = 1.180e-44
Identity = 67/95 (70.53%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    7 KNQQNCSECASVSKGVFCELSRDDLQDVSEHKVTNTYKKGQTLFVQGNHPFGLYCVSTGNIKITKIGADGKESIVRIASAGDVLGHRSLFTDQFY 291
            K   +C +C S   G+FC +    L+D+S HKVTN YKKGQTLFVQGNHPFG+YCVS+GNIK++KIG+DGKESIVRI SAGD+LGHRSLFTDQFY
Sbjct:    8 KGSLHCKDCPSRENGIFCAMELASLEDISNHKVTNVYKKGQTLFVQGNHPFGIYCVSSGNIKVSKIGSDGKESIVRIVSAGDILGHRSLFTDQFY 102
[Close]
BLAST of mRNA_C-australica_Contig_10393.2.1 vs. uniprot
Match: T0R9D3_9PROT (Cyclic nucleotide-binding domain protein n=1 Tax=Bacteriovorax sp. BSW11_IV TaxID=1353529 RepID=T0R9D3_9PROT)

HSP 1 Score: 150 bits (378), Expect = 1.760e-43
Identity = 67/99 (67.68%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    1 MKKNQQN--CSECASVSKGVFCELSRDDLQDVSEHKVTNTYKKGQTLFVQGNHPFGLYCVSTGNIKITKIGADGKESIVRIASAGDVLGHRSLFTDQFY 291
            MK ++++  C  C S  +G+FC+L   +LQD+SEHKVTN YKKGQTLFVQGNHPFGLYC+S+GNIK+TK G DGKESIVRI + GDVLGHRSLFT+++Y
Sbjct:    1 MKHSRESNACQNCPSRGEGIFCDLENMELQDISEHKVTNLYKKGQTLFVQGNHPFGLYCISSGNIKVTKTGPDGKESIVRIVTGGDVLGHRSLFTNEYY 99
[Close]
BLAST of mRNA_C-australica_Contig_10393.2.1 vs. uniprot
Match: A0A2E2EHP2_9PROT (Transcriptional regulator n=1 Tax=Halobacteriovoraceae bacterium TaxID=2026745 RepID=A0A2E2EHP2_9PROT)

HSP 1 Score: 147 bits (371), Expect = 1.950e-42
Identity = 62/94 (65.96%), Postives = 79/94 (84.04%), Query Frame = 1 
Query:   10 NQQNCSECASVSKGVFCELSRDDLQDVSEHKVTNTYKKGQTLFVQGNHPFGLYCVSTGNIKITKIGADGKESIVRIASAGDVLGHRSLFTDQFY 291
            N+  C  C S  +G+FCEL  + L DV +HKV NTYKKGQTLFVQGN P+G+YC+S GN+K+T++GADGKESIVRIA++GDV+GHRS+FTDQ+Y
Sbjct:    6 NRLECESCPSKGEGIFCELESEALHDVDDHKVVNTYKKGQTLFVQGNPPYGMYCISKGNVKVTQVGADGKESIVRIATSGDVVGHRSIFTDQYY 99
[Close]
BLAST of mRNA_C-australica_Contig_10393.2.1 vs. uniprot
Match: T0RCG0_9PROT (Cyclic nucleotide-binding domain protein n=1 Tax=Bacteriovorax sp. Seq25_V TaxID=1201288 RepID=T0RCG0_9PROT)

HSP 1 Score: 147 bits (371), Expect = 2.010e-42
Identity = 63/95 (66.32%), Postives = 76/95 (80.00%), Query Frame = 1 
Query:    7 KNQQNCSECASVSKGVFCELSRDDLQDVSEHKVTNTYKKGQTLFVQGNHPFGLYCVSTGNIKITKIGADGKESIVRIASAGDVLGHRSLFTDQFY 291
            K ++ C  C S   G+FC+L   +L +VS HKVTNTYKKGQTLFVQGNHPFG+YC+++GNIK+TK G DGKESIVR+A  GDVLGHRSLFT  +Y
Sbjct:    5 KEEEKCQSCPSKGTGIFCDLKDSELDEVSVHKVTNTYKKGQTLFVQGNHPFGIYCINSGNIKVTKTGPDGKESIVRVAKGGDVLGHRSLFTSDYY 99
[Close]
BLAST of mRNA_C-australica_Contig_10393.2.1 vs. uniprot
Match: A0A849SZT0_9PROT (Crp/Fnr family transcriptional regulator n=1 Tax=Bacteriovoracaceae bacterium TaxID=2081706 RepID=A0A849SZT0_9PROT)

HSP 1 Score: 147 bits (370), Expect = 2.760e-42
Identity = 67/99 (67.68%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    1 MKKNQQN--CSECASVSKGVFCELSRDDLQDVSEHKVTNTYKKGQTLFVQGNHPFGLYCVSTGNIKITKIGADGKESIVRIASAGDVLGHRSLFTDQFY 291
            MKK Q N  C +C S  +G+FC L+  ++ DVS+HK+TN YKKGQTLFVQG HPFGLYC+S+GNIK+TK G DGKESIVRI  AGD+LGHRSLFTD+ Y
Sbjct:    1 MKKEQTNSSCDQCPSKEEGIFCHLNFSEVIDVSQHKITNRYKKGQTLFVQGTHPFGLYCISSGNIKLTKTGIDGKESIVRIVHAGDILGHRSLFTDEDY 99
[Close]
BLAST of mRNA_C-australica_Contig_10393.2.1 vs. uniprot
Match: UPI0013E2D6CD (Crp/Fnr family transcriptional regulator n=1 Tax=Halobacteriovorax sp. HLS TaxID=2234000 RepID=UPI0013E2D6CD)

HSP 1 Score: 145 bits (366), Expect = 1.050e-41
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    7 KNQQNCSECASVSKGVFCELSRDDLQDVSEHKVTNTYKKGQTLFVQGNHPFGLYCVSTGNIKITKIGADGKESIVRIASAGDVLGHRSLFTDQFY 291
            K+Q  C  C S  +G+FCEL    L D+ +HKVTN YKKGQTLFVQGNHPFG+YC+S GN+K+TK+G DGKESIVRI   GD+LGHRSLFT++ Y
Sbjct:    2 KSQTKCESCPSNGQGIFCELEELALSDIDKHKVTNKYKKGQTLFVQGNHPFGIYCISKGNVKVTKVGPDGKESIVRICQGGDILGHRSLFTEEHY 96
[Close]
BLAST of mRNA_C-australica_Contig_10393.2.1 vs. uniprot
Match: T0SYJ7_9PROT (Cyclic nucleotide-binding domain protein n=1 Tax=Bacteriovorax sp. DB6_IX TaxID=1353530 RepID=T0SYJ7_9PROT)

HSP 1 Score: 144 bits (364), Expect = 2.290e-41
Identity = 64/95 (67.37%), Postives = 74/95 (77.89%), Query Frame = 1 
Query:    7 KNQQNCSECASVSKGVFCELSRDDLQDVSEHKVTNTYKKGQTLFVQGNHPFGLYCVSTGNIKITKIGADGKESIVRIASAGDVLGHRSLFTDQFY 291
            K    C  C S  +GVFC+L   +L ++S+HKVTN YKKGQTLFVQGNHPFGLYCV++GNIK+TK G DGKESIVRI   GDVLGHRSLFT  +Y
Sbjct:    5 KEADKCQNCPSKGQGVFCDLETPELDELSQHKVTNLYKKGQTLFVQGNHPFGLYCVNSGNIKVTKTGPDGKESIVRIVKGGDVLGHRSLFTSDYY 99
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10393.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E3XVD8_9PROT1.360e-5078.13Crp/Fnr family transcriptional regulator n=1 Tax=H... [more]
A0A2D5YL90_9PROT8.380e-4671.58Crp/Fnr family transcriptional regulator n=1 Tax=H... [more]
A0A1J5KYG4_9PROT1.080e-4470.53Uncharacterized protein n=1 Tax=Bacteriovorax sp. ... [more]
A0A2H0QGH2_9PROT1.180e-4470.53Crp/Fnr family transcriptional regulator n=1 Tax=B... [more]
T0R9D3_9PROT1.760e-4367.68Cyclic nucleotide-binding domain protein n=1 Tax=B... [more]
A0A2E2EHP2_9PROT1.950e-4265.96Transcriptional regulator n=1 Tax=Halobacteriovora... [more]
T0RCG0_9PROT2.010e-4266.32Cyclic nucleotide-binding domain protein n=1 Tax=B... [more]
A0A849SZT0_9PROT2.760e-4267.68Crp/Fnr family transcriptional regulator n=1 Tax=B... [more]
UPI0013E2D6CD1.050e-4165.26Crp/Fnr family transcriptional regulator n=1 Tax=H... [more]
T0SYJ7_9PROT2.290e-4167.37Cyclic nucleotide-binding domain protein n=1 Tax=B... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10393contigC-australica_Contig_10393:533..823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1353529.M899_0372
PFAMsHTH_Crp_2,cNMP_binding
Model size291
Max annot lvl213481|Bdellovibrionales
KEGG koko:K10914
KEGG Pathwayko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.88e-44
EggNOG OGsCOG0664@1|root,COG0664@2|Bacteria,1MZZD@1224|Proteobacteria,42QUX@68525|delta/epsilon subdivisions,2MT5W@213481|Bdellovibrionales,2WMWV@28221|Deltaproteobacteria
DescriptionPFAM Cyclic nucleotide-binding
Cds size291
COG categoryK
BRITEko00000,ko00001,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586776.0738368-CDS-C-australica_Contig_10393:532..8231682586776.0738368-CDS-C-australica_Contig_10393:532..823Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10393 533..823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10393.2.1prot_C-australica_Contig_10393.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10393 533..823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10393.2.1

>prot_C-australica_Contig_10393.2.1 ID=prot_C-australica_Contig_10393.2.1|Name=mRNA_C-australica_Contig_10393.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=97bp
MKKNQQNCSECASVSKGVFCELSRDDLQDVSEHKVTNTYKKGQTLFVQGN
HPFGLYCVSTGNIKITKIGADGKESIVRIASAGDVLGHRSLFTDQFY
back to top

mRNA from alignment at C-australica_Contig_10393:533..823+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10393.2.1 ID=mRNA_C-australica_Contig_10393.2.1|Name=mRNA_C-australica_Contig_10393.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=291bp|location=Sequence derived from alignment at C-australica_Contig_10393:533..823+ (Chrysoparadoxa australica CS_1217)
ATGAAAAAGAATCAACAGAACTGTTCAGAGTGTGCTTCGGTATCGAAGGG
TGTTTTTTGCGAACTAAGTAGAGATGACCTTCAAGATGTTAGTGAGCACA
AAGTAACCAACACATATAAAAAGGGGCAAACACTTTTTGTACAAGGTAAT
CACCCTTTTGGTCTTTACTGTGTCAGTACTGGAAATATCAAGATCACAAA
AATTGGTGCTGATGGAAAAGAATCTATCGTAAGAATTGCATCAGCAGGTG
ATGTTCTTGGCCACAGAAGTCTTTTTACAGATCAATTTTAT
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_10393:533..823+

>mRNA_C-australica_Contig_10393.2.1 ID=mRNA_C-australica_Contig_10393.2.1|Name=mRNA_C-australica_Contig_10393.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=291bp|location=Sequence derived from alignment at C-australica_Contig_10393:533..823+ (Chrysoparadoxa australica CS_1217)
ATGAAAAAGAATCAACAGAACTGTTCAGAGTGTGCTTCGGTATCGAAGGG
TGTTTTTTGCGAACTAAGTAGAGATGACCTTCAAGATGTTAGTGAGCACA
AAGTAACCAACACATATAAAAAGGGGCAAACACTTTTTGTACAAGGTAAT
CACCCTTTTGGTCTTTACTGTGTCAGTACTGGAAATATCAAGATCACAAA
AATTGGTGCTGATGGAAAAGAATCTATCGTAAGAATTGCATCAGCAGGTG
ATGTTCTTGGCCACAGAAGTCTTTTTACAGATCAATTTTAT
back to top