mRNA_C-australica_Contig_1038.3.4 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1038.3.4
Unique NamemRNA_C-australica_Contig_1038.3.4
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_1038.3.4 vs. uniprot
Match: A0A836C9M8_9STRA (Cytochrome b561 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M8_9STRA)

HSP 1 Score: 129 bits (325), Expect = 9.620e-30
Identity = 87/254 (34.25%), Postives = 131/254 (51.57%), Query Frame = 3 
Query: 1803 AVAMMPSFLTTLDVITSKREALLGRLRPPHCLGSRVWTHILAPTLFLSISICIFAHLRKLTLFSFHPLFMSLAFIT-LSEGIVAFRNQHIYEAIHPITVGGRKTTLRNIHMILQTSVACFTLLGLFLMLAYKVRMFGPHPFSIVPQSVHGCLGLIVVGAMGAQVVVGFRKRLSLTTGVLVGSSTGTQYPWHEKLGLLILDLAVMAIVSGLLKSEGL-TWGSFVTICIAALLWLTTALQMRPDAPTVESSTSPLN 2558
            A A+  +    LD  T +R  L      P  L  +  TH+LA    ++I + +  H R  ++FSFHPLFMSL F+  +S G++A+RN+ + + + PI + G  T  R +H+  Q+    F LLGL  ++A K++    H  ++VP S+H  LG  V+ A   QV VG  K  SLT           +  WH K+GLL+ D+A + I++GL    G+ T  S V + +  LLW+    QM    P   +  S LN
Sbjct:    2 AAAVSENLRAALDETTVRRTRLFSSFTTPKWLKPKYMTHVLAAANVITIVVIVAIHERTFSVFSFHPLFMSLGFLMCMSLGVIAYRNKFLLDLLSPIMMHGPTTKSRTMHITFQSFAGGFILLGLLFIVASKLK----HGSTVVPHSIHAVLGSAVLVATAVQVTVGKLKYDSLTR------RQERKQLWHGKMGLLLYDVAAVTILTGLWALVGVVTLSSLVMMLMLVLLWVNINYQMSEPRPPDVAPYSGLN 245
[Close]
BLAST of mRNA_C-australica_Contig_1038.3.4 vs. uniprot
Match: A0A7R9YFW7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFW7_9STRA)

HSP 1 Score: 122 bits (307), Expect = 5.140e-27
Identity = 74/229 (32.31%), Postives = 118/229 (51.53%), Query Frame = 3 
Query: 1818 PSFLTTLDVITSKREALLGR----LRPPHCLGSRVWTHILAPTLFLSISICIFAHLRKLTLFSFHPLFMSLAFITLSEGIVAFRNQHIYEAIHPITVGGRKTTLRNIHMILQTSVACFTLLGLFLMLAYKVRMFGPHPFSIVPQSVHGCLGLIVVGAMGAQVVVGFRKRLSLTTGVLVGSSTGTQYPWHEKLGLLILDLAVMAIVSGLLKSEGLTWGSFVTICIAALLW 2492
            P  +  LD  T +R+ALL R    +     L   +W H       + + I +    R L LF+FHP+FM+   + ++EG++ +RN+ ++  +H I     KT  RN+H  +Q   A    LG+  ++A K++ FG    S+ P SVH  +G   +  +  QV VGFRKR  +     + S  G  Y WH KLGL+  D  V+A+V+G+L     ++ +F+ I  + L W
Sbjct:   56 PRAMRLLDNYTLQRKALLQRAYVVVSKYVLLSDNIWAHAQTLLCGVLVMISVLGQARGLKLFAFHPIFMNFMVMLMTEGVIVYRNEFLFNMLHSIMAFDAKTKFRNLHTGIQVCSAAAAALGVIFIMANKLK-FGK---SLWPTSVHSLIGSFALLLICIQVFVGFRKRRMMALNEQMQSDIGPVYRWHGKLGLVAYDFCVLALVTGMLSYVNWSFANFLVIFSSLLTW 280
[Close]
BLAST of mRNA_C-australica_Contig_1038.3.4 vs. uniprot
Match: A0A4D9CVZ3_9STRA (Cytochrome b561 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVZ3_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.090e-24
Identity = 82/245 (33.47%), Postives = 127/245 (51.84%), Query Frame = 3 
Query: 1824 FLTTLDVITSKREALLGRLRPPHCL-GSRVWTHILAPTLFLSISICIFAHLRKLTLFSFHPLFMSLAFIT-LSEGIVAFRNQHIYEAIHPITVGGRKTTLRNIHMILQTSVACFTLLGLFLMLAYKVRMFGPHPFSIVPQSVHGCLGLIVVGAMGAQVVVGFRKRLSLTTGVLVG---SSTGTQYPWHEKLGLLILDLAVMAIVSGLLKSEGLTWGSFVTICIAALLWLTTALQM--RPDAPTVE 2537
            F+ TLD +T  R   + RL+    L  S +  H+ A +L L I     A    LTLFSFHP+FMS+  +  ++EGI+A+RN   ++ + PI     +  L+NIH       A   +LG+  + + KV+    H  +I+P S+H  LG +V   M  Q++ G  K  +  +GV+ G      G  + WH K GL++ D+A+  + +G++KS G    +F  +    L+W    LQM  RP  PT E
Sbjct:   44 FVKTLDNVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVLGMAFIFSNKVKK---HR-TILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGIGRDGGGVLHRWHGKAGLILYDVAMATVATGVVKSLGFGLMTFFMVLHVCLVWFMVHLQMGSRPFRPTEE 284
[Close]
BLAST of mRNA_C-australica_Contig_1038.3.4 vs. uniprot
Match: W7TJN5_9STRA (Cytochrome b-561 domain containing 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJN5_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.550e-24
Identity = 80/245 (32.65%), Postives = 126/245 (51.43%), Query Frame = 3 
Query: 1818 PSFLTTLDVITSKREALLGRLRPPHCL-GSRVWTHILAPTLFLSISICIFAHLRKLTLFSFHPLFMSLAFIT-LSEGIVAFRNQHIYEAIHPITVGGRKTTLRNIHMILQTSVACFTLLGLFLMLAYKVRMFGPHPFSIVPQSVHGCLGLIVVGAMGAQVVVGFRKRLSLTTGVLVGSST---GTQYPWHEKLGLLILDLAVMAIVSGLLKSEGLTWGSFVTICIAALLWLTTALQM--RPDAPT 2531
            P F    D +T  R   + RL+    L  S +  H+ A +L L I     A    LTLFSFHP+FMS+  +  ++EGI+A+RN   ++ + PI     +  L+NIH       A   ++G+  + + KV+    H  +I+P S+H  LG +V   M  Q++ G  K  +  +GV+ G+     G  Y WH K GL++ D+A+  + +GL+KS G    +F+ +    L+W    LQM  +P  PT
Sbjct:   29 PLFTNFTDAVTELRRNFVARLKILDPLVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKK---HR-TILPTSIHAALGFLVCALMVLQMIAGLEKLDAQRSGVIGGNGRDGGGVLYRWHGKAGLILYDVAMATVATGLVKSLGFGLITFLMVLHVCLVWFMVHLQMGSKPFRPT 269
[Close]
BLAST of mRNA_C-australica_Contig_1038.3.4 vs. uniprot
Match: A0A8I2K1P1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A8I2K1P1_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 6.840e-6
Identity = 76/290 (26.21%), Postives = 122/290 (42.07%), Query Frame = 3 
Query:  228 LVASAAPLLHMVYPSAGTVLRSGRPTTAQWYSEDLPAAASVNLTLFKRGRPSRVVASNIPNSLSQGWSPTLEDEQGLHYQMQIS--SGSLSHRSPE-FTIIHPFNFLFSQPVASSRFLRGTEQQILWVSSDTSEYLPIRIELMQEGNFLSIIEPLTSNDGVYRWLIPGDMPEANSCQVKISNYNEASEFWLSE-VFTVLSETLAL-DVTSPSGETSALWFQSTVITWTNSGDIPFVDIYLRSQDGGQGNDGAITELGSGVPSNLGGSFTWEVGSDIPPGLYSIEVSDPQG 1082
            +++S +  L + YP+ G  L  G      W S       S+  +    G    V+  +  NS +  W  T+ D       ++IS  SG+LS  S   F+II     +   P     +  G+   + W SS     + I   +   G+F +++E  T NDG Y W +P D P  N C V+I    +A      + VF+++S    L  +  P+G  + +   +  ITW++ G +  V I      G   N+  IT       +  GGSF W V  D       ++VS+  G
Sbjct:   92 IISSTSASLTLTYPNGGEQLPVGSVQVITWKSTGEMGEISLEYSA-DNGVNWTVIVESTANSGTYDW--TIPDAISNTCLVRISEVSGTLSDTSDGVFSIIQQPWIIVISPNGGEIWEAGSVYPVTWQSSGDVGNVTIEYSI-NSGDFWTMVEDSTENDGSYDWTVP-DTPSEN-CLVRIKGSTDAIIPDTGDAVFSIVSPVSPLLTIHFPNGGETLIIGNTYEITWSSYGAVGEVKIEYSVDSGTNWNE--IT-----AAAENGGSFDWTV-PDTASDTCLVQVSEIDG 367
[Close]
BLAST of mRNA_C-australica_Contig_1038.3.4 vs. uniprot
Match: A0A7C4HMG5_9BACT (M6 family metalloprotease domain-containing protein n=1 Tax=Kiritimatiellae bacterium TaxID=2212473 RepID=A0A7C4HMG5_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 8.250e-6
Identity = 55/208 (26.44%), Postives = 92/208 (44.23%), Query Frame = 3 
Query:  453 GLHYQMQISSGSLSHRSPEFTIIHPFN-----FLFSQPVASSRFLRGTEQQILWVSSDTSEYLPIRIELMQEGNFLSIIEPLTSNDGVYRWLIPGDMPEANSCQVKISNYNEASEFWLSEV--FTVLSETLALDVTSPSGETSALWFQSTVITWTNSGDIPFVDIYLRSQDG------GQGNDGAITELGSGVPSNLGGSFTWEVGSD 1037
            G +Y     S + +  SP+ TI   FN      + + P    R+ RG  + I W+SS       +++EL++ G   S +   T NDG + W+IP     A +  V+I++    ++   S+     VLS   ALD T               +TWTNSG++P+      ++DG      G   D   + +G+ +      +F W+V S+
Sbjct:  825 GTYYDTITVSSAQAGNSPQ-TIPVTFNVQSADMIVTAPNGGERWARGETKAITWISSLGGN---VQVELLRGGAQDSTLAASTPNDGAFDWVIPAAQAAATNYAVRITSVESPTKSDTSDANFSIVLSLADALDTTG--------------LTWTNSGNLPWFAQTTTTKDGVDAAQSGAIGDNQSSSVGAALVGPGTMTFWWKVSSE 1014
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1038.3.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836C9M8_9STRA9.620e-3034.25Cytochrome b561 domain-containing protein n=1 Tax=... [more]
A0A7R9YFW7_9STRA5.140e-2732.31Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9CVZ3_9STRA1.090e-2433.47Cytochrome b561 domain-containing protein n=2 Tax=... [more]
W7TJN5_9STRA1.550e-2432.65Cytochrome b-561 domain containing 1 n=1 Tax=Nanno... [more]
A0A8I2K1P1_9BACT6.840e-626.21Uncharacterized protein n=1 Tax=Candidatus Aminice... [more]
A0A7C4HMG5_9BACT8.250e-626.44M6 family metalloprotease domain-containing protei... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1038contigC-australica_Contig_1038:9600..14976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1313421.JHBV01000041_gene3465
PFAMsAutotransporter,Calx-beta,DUF4183,SLH,VCBS
Model size2718
Max annot lvl2|Bacteria
Hectar predicted targeting categorysignal peptide
Exons20
Evalue1.77e-11
EggNOG OGsCOG3391@1|root,COG3391@2|Bacteria
Descriptionamine dehydrogenase activity
Cds size1221
COG categoryCO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586774.9273221-UTR-C-australica_Contig_1038:9599..97841682586774.9273221-UTR-C-australica_Contig_1038:9599..9784Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1038 9600..9784 +
1682586775.0272815-UTR-C-australica_Contig_1038:12314..123631682586775.0272815-UTR-C-australica_Contig_1038:12314..12363Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1038 12315..12363 +
1682586775.0371497-UTR-C-australica_Contig_1038:12505..130451682586775.0371497-UTR-C-australica_Contig_1038:12505..13045Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1038 12506..13045 +
1682586775.0468452-UTR-C-australica_Contig_1038:13123..132041682586775.0468452-UTR-C-australica_Contig_1038:13123..13204Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1038 13124..13204 +
1682586775.0576916-UTR-C-australica_Contig_1038:13271..133641682586775.0576916-UTR-C-australica_Contig_1038:13271..13364Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1038 13272..13364 +
1682586775.0653324-UTR-C-australica_Contig_1038:13634..137131682586775.0653324-UTR-C-australica_Contig_1038:13634..13713Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1038 13635..13713 +
1682586775.0730486-UTR-C-australica_Contig_1038:13900..139621682586775.0730486-UTR-C-australica_Contig_1038:13900..13962Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1038 13901..13962 +
1682586775.0812829-UTR-C-australica_Contig_1038:14103..141621682586775.0812829-UTR-C-australica_Contig_1038:14103..14162Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1038 14104..14162 +
1682586775.0896597-UTR-C-australica_Contig_1038:14258..143131682586775.0896597-UTR-C-australica_Contig_1038:14258..14313Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1038 14259..14313 +
1682586775.099134-UTR-C-australica_Contig_1038:14456..145421682586775.099134-UTR-C-australica_Contig_1038:14456..14542Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1038 14457..14542 +
1682586775.1156034-UTR-C-australica_Contig_1038:14691..147421682586775.1156034-UTR-C-australica_Contig_1038:14691..14742Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1038 14692..14742 +
1682586775.1254733-UTR-C-australica_Contig_1038:14819..149761682586775.1254733-UTR-C-australica_Contig_1038:14819..14976Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1038 14820..14976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586774.9365237-CDS-C-australica_Contig_1038:9784..101641682586774.9365237-CDS-C-australica_Contig_1038:9784..10164Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1038 9785..10164 +
1682586774.9508536-CDS-C-australica_Contig_1038:10255..103071682586774.9508536-CDS-C-australica_Contig_1038:10255..10307Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1038 10256..10307 +
1682586774.9587743-CDS-C-australica_Contig_1038:10409..104801682586774.9587743-CDS-C-australica_Contig_1038:10409..10480Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1038 10410..10480 +
1682586774.969035-CDS-C-australica_Contig_1038:10561..106221682586774.969035-CDS-C-australica_Contig_1038:10561..10622Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1038 10562..10622 +
1682586774.9774382-CDS-C-australica_Contig_1038:10762..108311682586774.9774382-CDS-C-australica_Contig_1038:10762..10831Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1038 10763..10831 +
1682586774.9857688-CDS-C-australica_Contig_1038:10947..110211682586774.9857688-CDS-C-australica_Contig_1038:10947..11021Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1038 10948..11021 +
1682586774.99423-CDS-C-australica_Contig_1038:11131..112431682586774.99423-CDS-C-australica_Contig_1038:11131..11243Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1038 11132..11243 +
1682586775.0020275-CDS-C-australica_Contig_1038:11535..116461682586775.0020275-CDS-C-australica_Contig_1038:11535..11646Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1038 11536..11646 +
1682586775.0099657-CDS-C-australica_Contig_1038:11885..120281682586775.0099657-CDS-C-australica_Contig_1038:11885..12028Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1038 11886..12028 +
1682586775.018215-CDS-C-australica_Contig_1038:12166..123141682586775.018215-CDS-C-australica_Contig_1038:12166..12314Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1038 12167..12314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1038.3.4prot_C-australica_Contig_1038.3.4Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1038 9785..12314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1038.3.4

>prot_C-australica_Contig_1038.3.4 ID=prot_C-australica_Contig_1038.3.4|Name=mRNA_C-australica_Contig_1038.3.4|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=407bp
MATAIRGLWLLLALLVASAAPLLHMVYPSAGTVLRSGRPTTAQWYSEDLP
AAASVNLTLFKRGRPSRVVASNIPNSLSQGWSPTLEDEQGLHYQMQISSG
SLSHRSPEFTIIHPFNFLFSQPVASSRFLRGTEQQILWVSSDTSEYLPIR
IELMQEGNFLSIIEPLTSNDGVYRWLIPGDMPEANSCQVKISNYNEASEF
WLSEVFTVLSETLALDVTSPSGETSALWFQSTVITWTNSGDIPFVDIYLR
SQDGGQGNDGAITELGSGVPSNLGGSFTWEVGSDIPPGLYSIEVSDPQGR
ISSAISPPFQVKSAALSEASLEVTSRSRSQASISPGGSAGIALSVIAVLV
TMGVLAVRFKRKQEMKALIDEVLPPPTVAFVPAISASFLVSLYSPPNHLP
FFSSAV*
back to top

mRNA from alignment at C-australica_Contig_1038:9600..14976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1038.3.4 ID=mRNA_C-australica_Contig_1038.3.4|Name=mRNA_C-australica_Contig_1038.3.4|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=5377bp|location=Sequence derived from alignment at C-australica_Contig_1038:9600..14976+ (Chrysoparadoxa australica CS_1217)
ATTCTCTACTTTAAGGCCTCAGCTCTTTAGACTTTTAGCTCTGCTTGCAC
GTAAGGAAATCGCAGAGCCGTTACAGCGATGGTTAAGAGCCTATGGTGGG
GGACGTGTTTCCCGTGTCAGTGGGGTAGCTTGCAGCCTACCGCAAGGGCA
GCGACAGATGTGAGATCTTGAGCAGCAGATATATCATGGCTACCGCGATC
AGAGGGCTTTGGCTGCTGCTGGCCCTACTCGTCGCCTCGGCTGCTCCTCT
CCTCCATATGGTCTACCCAAGCGCCGGCACCGTCCTCAGGTCCGGCAGAC
CCACTACAGCCCAGTGGTACTCAGAGGATCTTCCAGCCGCTGCAAGTGTA
AACCTCACTTTGTTCAAGCGAGGGCGGCCCAGTCGTGTTGTGGCTTCAAA
CATCCCTAACAGCCTATCGCAAGGTTGGAGTCCCACGCTTGAAGACGAGC
AGGGGTTGCACTACCAGATGCAGATATCTTCAGGGTCCTTATCGCACCGG
TCACCAGAGTTCACCATCATCCACCCCTTCAACTTCTTGTTCTCTCAGCC
GGTCGCGTCTAGCAGGTTTGACGAAATGCCCCATCCCTAACATCTACCTG
TCTCTTCCTCTCCACTCGTAGTGCTCCTGCGCTTCCTTACTGCCTCCATC
ACATAGGTTTCTACGAGGAACAGAGCAGCAGATCCTTTGGGTTAGCAGTG
ACACATCGGTATCTATACTCTCACAGTTGATTGTTAAAAAAATTCGCTGA
TCCACCCACATCGGCCTCTCATTGGCCTCTCACTCTTTGCCCACGTACCC
TCACTCACAGGAGTACCTGCCGATCCGCATCGAGCTCATGCAGGAAGGAA
ACTTCCTGTCAATAATAGAGCCGCTAACTAGGTAGGTATAGTCCCACTGC
AGAGGGATAATCCTTACCTGCCTCCACCTCAACCTTCACCCCTCACTCTC
TGCCACCTAAAGTAATGATGGTGTCTACCGTTGGTTGATACCAGGCGACA
TGCCTGAGGCCAACTCATGTCAGGTCAGGAAGGTCTTTCTCATGCTCTTG
TGGCCTGACTTAAACTCTAACATTATAGTGATATGTGCTTCGCATCACAA
TAGCGGTAGAAAACAGTGCTTGCTGTACCCCCAGCTCTAACTCTGGCCAT
GTCGCTGATAAAGGTGAAAATATCCAACTACAATGAAGCTTCCGAGTTCT
GGCTCTCCGAGGTGTTTACAGTTTTGTCTGAGGTTAGCAGATGTCGCGAT
TGCACCCTGCCCTAACCAACCATAACCACAACAGCGCAGCAGTCCCCAAG
CCAATACAGCAGCTGACCCCACTGCCCTGCTGCCAATGCTACCCCCAGAC
TCTTGCGCTAGATGTTACGTCCCCAAGTGGTGAGACATCCGCGCTTTGGT
TCCAGAGCACTGTCATTACATGGTAACCTTCAAGCCGGATCCTAACGTTT
GGGGTGTTGCTCGTGCTGCTTTGCCCCTTTCACTGCTAGTAGCAGCTACC
CAGCATTGCTCTCCTTCATCACACCATACCAGGACCAACTCTGGCGACAT
TCCATTCGTGGATATTTACTTGCGGAGTCAGGACGGAGGGCAGGGTAATG
ATGGCGCCATTACCGAGCTAGGCAGTGGAGTGCCCAGTAACTTGGTGAGT
TTGCATTAGCTTGCTGGCACTCATTCAGTCATTCAGCTATTCCAGCTATT
CATTTGTTCTGTACAGTGTAGCTTGTCACTTGCTGTACTCACGGCACCAA
TTCCCACGCTCATCAAATATGCGTTTAAAGCCTTTTAAGTCTTCAAACAC
ATCCTGATTTAGCAGCTTCACCCCGAGTCGGAGTCAGAGTGCAAATTCAG
TTAATCACTGCTAACTTGTGACCATTTAATCAGCACTGCTCTAGGAACTT
TTACTTTCTTCTCTCTCTGACTCATTCAACCTGCAGGGCGGATCTTTTAC
ATGGGAGGTAGGGAGTGACATACCCCCAGGTCTGTACTCCATAGAGGTAT
CAGACCCTCAAGGGCGAATAAGTTCAGCAATTTCTCCGCCTTTCCAGGTA
TGTAATGGCAAAAACTTCCTCGTCGCGCAGTGCATTGTGCTAGGCTGATT
ATGTTCAGCCCTAATTGAGCGCTGAACGCAATGCGGCAGCTCACTTTACA
TAGAAAGTCCAAGCCTTGCCCTAGCCTTTGCTTATGACCCCATCCCATTT
AATTTTGCCTTTCTCGCTGATCTTCCGGTCTAACCAACCTCATTTGCAAT
CTACTTTTTCCCTCTTATCCCACTGCCCCCCCTCAGGTAAAAAGTGCAGC
CCTCAGTGAGGCCAGTTTGGAAGTCACAAGTAGGTCCAGGTCACAAGCTT
CGATATCACCTGGTGGGTCTGCTGGTATTGCCCTGTCCGTGATCGCAGTG
CTAGTCACTATGGGAGTTCTGGCTGTCAGGTAAAATTCATTCACTTAACT
CACTGGGTCATCTCTATTGCTTGCTCTTTACCCCAGGGGATTGATGCCTG
TCATCCACTTCTCACCAAGCAGCTCACTCATTGACGCCCCTGTCTTTCTT
CCTGCCCCGTCTGTCAGATTCAAGCGAAAGCAAGAGATGAAAGCCCTGAT
AGATGAAGTGCTGCCGCCCCCAACGGTAGCATTTGTGCCAGCCATATCAG
CCTCTTTCCTCGTTTCACTCTACTCACCACCAAACCACCTCCCGTTCTTC
TCTTCCGCAGTCTGAGGCAGGGTAACATGGTGGCTCCCAGCCTTCTACGG
GCGATCCTTCTCAAGCACCAGCACGGTGAGGTCAAGAGGAGGAAAAACAG
GTAGACAAAAGAGCTCTGTGCTTCAGTGCTCTCTTTCAGCAAGAGGAAAT
AAAACAAAGAAAGGATCATTTTGTTTCTTTCTTCGTTTGTATCATACCTC
GTTGAGGGCAAGGGCATTAGCAGCCTGGGTAAGGAAACCCAAGGAAAGAC
CAGGGGAACAAACGAGCAGGGCCAAAGCAAGCCAGGCAAGAGCGTCAGCA
ACTGCTACTCCCACTCATCACTCCTCTCCTCCTCTCCTCCCGCTCTACAG
GGTGCTAATTTAAAGGAGGGGGAGCCTCCCAAAACCAGGACTGCAGGACT
GCAGGACTGGGCCCAGGAGAGAGGCAGCAACAGTAGACAGCCCCGAGGGA
TATATTCAAGCATTTGTAGCCTCCTGAACATCTTTCCCTTCCCTCCCACC
TGAATACCGTGCTCCCCTTCCTCCCTTTCCTCCCCACCTTTATGTAGTTG
GCAGCGGTAGCAATGATGCCCTCATTCTTGACAACGCTAGACGTCATCAC
CAGCAAGCGAGAGGCGCTCCTGGGGCGCCTACGGCCTCCCCATTGCTTGG
GGTCTCGAGTGTGGACCCATATCCTCGCACCTACGCTGTTTCTCAGCATT
AGCATTTGCATCTTTGCACATCTGAGGAAGTTGACTCTTTTCTCATGTGA
GTCACAGCTAGTTCTCACCGGCCAATCCAAGCTACCTCGAACATTGCGCT
AAACTCCTCCGTCCCCCCCTCCAGTTCACCCCTTGTTTATGAGTCTTGCT
TTCATTACGTTGAGCGAGGGAATTGTTGCTTTTAGGAATCAGCATATCTA
TGAAGGTCAACTGATATCGTCCCATGTGTCCCATTAGCTCAAATCCTCAC
TGTGTCTCTTTCACACTTGCAGCAATCCATCCCATCACCGTCGGCGGGAG
GAAGACCACGCTCAGGAACATTCACATGATCCTGCAAACGTCTGTTGCTT
GCTTTACCTTGCTTGGTGGGTCCTTTACTCACTTACTTGCTCACTTACTT
GTCAGTTCCTTGTTCCCTTACACCATCATTACCCTCCTGCAGCAGCACCC
ATCCATCCATCATGCCTCATCTTGCTCTCACCCATGCCTAGCCGCGATAA
TACAGGCTCAAGGGTACCTACCCCATTCTGAGACTCAGATGCTTACTGTT
CCATCATTACCTGCTTATTGTCCCGTCGTTACCTGCTCTTTCTTGTCCAT
TCAATCATACCCTTTCCTGACTCATCCAATTGCAGGCCTGTTTTTGATGC
TTGCTTACAAAGTGCGAATGTTTGGGCCGCATCCCTTTTCCATTGTGCCC
CAGTCAGTACACGGGTAGGGTCAGTAGGGTCACACCCTTACCCATTTATG
CCTACTCAGCTCACAACTCATGACCCAAGACCCATTCCCTTGTGTGCTTG
GTGCCATCACCACAGCCTCAGGCTACTCCCTCCATAGCTCCTACCACCGA
GTGAGGCCTCACCTACGCTCTCTCTCTTGTCCCCTTGCACTTGCATGCTA
GGTGCCTAGGACTGATCGTGGTGGGTGCCATGGGGGCCCAGGTGGTGGTT
GGCTTCAGGAAACGTGAGAAGAGCGAGCCTTGGCATGCAAGATTGCTGGA
CGAACGGCCACTTGAATTGTTTTATATCACGCTATGATCCATCCCTCATG
CTGAGACCAATCTTTCCATTATCTAAATTGTGCCTACTCACTTTTGGTGA
CCAGGTCTTAGCTTGACAACAGGGGTGCTGGTGGGAAGTAGCACGGGGAC
ACAGTATCCTTGGGTGAGTGAATGAACAAAGCCGTATGAGGGTGACTGTG
AGTGTGGTTGCAAGTCTTGGTGAGTTCTAACCAGTAGCTCACTTTCCTTT
CCTCTCTAGCATGAGAAGCTTGGTCTGTTAATACTTGACCTTGCCGTGAT
GGCGATAGTATCAGGTCAGCAGCATGGCATATTTCCTTTATTGTTCACTC
TTGGCTGCCTCTCCCTCTTCACCTCTTCACCTCTTCACCTTACATGTCAT
GTCTTGACGTTCAACCTCTTCACTCTTTTCGTATCTCACTCTGTCTACCC
TGGGCAGGTTTGCTCAAGTCAGAGGGGCTGACCTGGGGCAGTTTTGTGAC
GATCTGTATCGCCGCATTGTTGTGGCTCACCACAGCACTTCAGGTGCCTC
CCTCCCTTGCATCACCTCCAAGCTTACTCCTAGCAGCAATTTCATCTATG
TCATTGCTGAGTTACCTGGGAGAGAGGGAAGCGCAGCCCTGGTCCTTTCC
CTCAATCCTGCCTGGTTTTCCCTCTGGCTCTTGGCTCACCAGATGAGACC
TGATGCACCAACAGTGGAGTCGTCAACATCGCCGCTTAACAGGGTAGGTA
CACTCCTGTTCCTTGCCCTGCTCCGGTGCACCCCCTCTTCTTCTTCTTCT
TACCCTCACAACAATGGCAGCGTTCTTCGGACAATGAGATGGAAGTTGAC
AGAAGAGATGTCGAGCTTGTTGCAGTCAACAGTCCTGATCGATAGTACTC
AACAGACAATGAAGCATTATGTTGGGTTCCTAGGACGTGGACCCCCCTTT
TTCAGTCCTATAACTACATGTGCTTCC
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_1038:9600..14976+

>mRNA_C-australica_Contig_1038.3.4 ID=mRNA_C-australica_Contig_1038.3.4|Name=mRNA_C-australica_Contig_1038.3.4|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1221bp|location=Sequence derived from alignment at C-australica_Contig_1038:9600..14976+ (Chrysoparadoxa australica CS_1217)
ATGGCTACCGCGATCAGAGGGCTTTGGCTGCTGCTGGCCCTACTCGTCGC
CTCGGCTGCTCCTCTCCTCCATATGGTCTACCCAAGCGCCGGCACCGTCC
TCAGGTCCGGCAGACCCACTACAGCCCAGTGGTACTCAGAGGATCTTCCA
GCCGCTGCAAGTGTAAACCTCACTTTGTTCAAGCGAGGGCGGCCCAGTCG
TGTTGTGGCTTCAAACATCCCTAACAGCCTATCGCAAGGTTGGAGTCCCA
CGCTTGAAGACGAGCAGGGGTTGCACTACCAGATGCAGATATCTTCAGGG
TCCTTATCGCACCGGTCACCAGAGTTCACCATCATCCACCCCTTCAACTT
CTTGTTCTCTCAGCCGGTCGCGTCTAGCAGGTTTCTACGAGGAACAGAGC
AGCAGATCCTTTGGGTTAGCAGTGACACATCGGAGTACCTGCCGATCCGC
ATCGAGCTCATGCAGGAAGGAAACTTCCTGTCAATAATAGAGCCGCTAAC
TAGTAATGATGGTGTCTACCGTTGGTTGATACCAGGCGACATGCCTGAGG
CCAACTCATGTCAGGTGAAAATATCCAACTACAATGAAGCTTCCGAGTTC
TGGCTCTCCGAGGTGTTTACAGTTTTGTCTGAGACTCTTGCGCTAGATGT
TACGTCCCCAAGTGGTGAGACATCCGCGCTTTGGTTCCAGAGCACTGTCA
TTACATGGACCAACTCTGGCGACATTCCATTCGTGGATATTTACTTGCGG
AGTCAGGACGGAGGGCAGGGTAATGATGGCGCCATTACCGAGCTAGGCAG
TGGAGTGCCCAGTAACTTGGGCGGATCTTTTACATGGGAGGTAGGGAGTG
ACATACCCCCAGGTCTGTACTCCATAGAGGTATCAGACCCTCAAGGGCGA
ATAAGTTCAGCAATTTCTCCGCCTTTCCAGGTAAAAAGTGCAGCCCTCAG
TGAGGCCAGTTTGGAAGTCACAAGTAGGTCCAGGTCACAAGCTTCGATAT
CACCTGGTGGGTCTGCTGGTATTGCCCTGTCCGTGATCGCAGTGCTAGTC
ACTATGGGAGTTCTGGCTGTCAGATTCAAGCGAAAGCAAGAGATGAAAGC
CCTGATAGATGAAGTGCTGCCGCCCCCAACGGTAGCATTTGTGCCAGCCA
TATCAGCCTCTTTCCTCGTTTCACTCTACTCACCACCAAACCACCTCCCG
TTCTTCTCTTCCGCAGTCTGA
back to top