mRNA_C-australica_Contig_1036.5.2 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1036.5.2 vs. uniprot
Match: A0A7S2UWV5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWV5_9STRA) HSP 1 Score: 253 bits (646), Expect = 1.590e-71 Identity = 159/449 (35.41%), Postives = 234/449 (52.12%), Query Frame = 1
Query: 562 RGSQTMKVLSPIIGSTLPAPAYEEGCEATIYECRPSATQGG---------GGGVITKLLFLNGTTTHYSEEGQG--CTLLKPEASKLAILTHGFSTCSHRWRNIAMDLVSRGHTVVLPLLTGHGAAA-------EALPHELFHVPTDNRKSRAFFSPEQGYGLTAQAIADVVVASFQ-LSYSEVLVGGFSAGGAVSKHAMTLVASAGELGEEELRR--VRILHVASFLDTPNKLVKAARAFHPLLVLNKLRMKGRWFTAVEGPEAPWDRFHLLGRKGYSYRSKTTDMHLLRYSTYVKKIFNSLGSWGGRLSGSKRRAAELMAEVPVLTFVLNQDTVVDNQQLLDSVASVHRNHQACGLESNS----------------------DHIPNACGEDEEIXXXX------GGSGKLEEYPDGLIHDTMLDENSRAGYEPGWWLPCVSDLVLR 1761
R S L+PI+ +L A +Y G EA IY+C + + G G + ++ F Y+ EG+ C + + L ILTHGF + RW +IA LVS+G VVLPLL GHGA A E +PH+ +H+P +RK +GYG A I ++VV + L Y ++++GGFSAGGAV+ A+ L+A+ + E +L +R+ HV SF DTP+++++ AR HPLL+L KL G W+T P+ F G K Y S++T+M LLRYST VKK + +L+ RA+ ++ +VP + L D D+ +LL+S+ VH ++AC +E N DH + G +E GGSG+ E YPDGL+HD+++D +RAG + GWW+ CV D+V R
Sbjct: 89 RNSNMTSALAPILSESLNARSYMAGGEAKIYQCVETLSTGAYLMNKFLPYESGQVNEIRFRTKKMV-YTPEGRQKYCKMREEGEQTLVILTHGFLVTTQRWDSIARALVSQGFDVVLPLLPGHGANATFQQSVLETVPHDRYHIPAQSRK--------RGYGQLAHTIREMVVTALNDLGYQKIVLGGFSAGGAVTADALMLLAADPRVSEAQLSSGALRVAHVVSFFDTPHQIIRMARDIHPLLILKKLIDPG-WYTKEWIYGHPYQNFAANGYKAYLRTSRSTEMRLLRYSTKVKKQYK-------KLAKKNNRASRIIRQVPTFSMTLKDDYTADSGKLLNSLGEVHNEYKACQVEGNKPSGICGTCCDEDACAWSGEYSPDHPADCQGVEEHTDLNDPRYNKCGGSGQKEVYPDGLVHDSLIDVEARAGKKEGWWVSCVFDVVYR 520 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1036.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1036.5.2 >prot_C-australica_Contig_1036.5.2 ID=prot_C-australica_Contig_1036.5.2|Name=mRNA_C-australica_Contig_1036.5.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=677bp MLHSGGFAALCLSCIALSGLLFASWGETGQWVGSGSGSGSAPDEHLAMWPback to top mRNA from alignment at C-australica_Contig_1036:6933..11181+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1036.5.2 ID=mRNA_C-australica_Contig_1036.5.2|Name=mRNA_C-australica_Contig_1036.5.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4249bp|location=Sequence derived from alignment at C-australica_Contig_1036:6933..11181+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1036:6933..11181+ >mRNA_C-australica_Contig_1036.5.2 ID=mRNA_C-australica_Contig_1036.5.2|Name=mRNA_C-australica_Contig_1036.5.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=2031bp|location=Sequence derived from alignment at C-australica_Contig_1036:6933..11181+ (Chrysoparadoxa australica CS_1217)back to top |