mRNA_C-australica_Contig_1036.4.4 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1036.4.4
Unique NamemRNA_C-australica_Contig_1036.4.4
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Match: D7FP71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP71_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 3.490e-94
Identity = 175/386 (45.34%), Postives = 233/386 (60.36%), Query Frame = 2
Query:  434 RALPRDSITHALTYLVSKELGALSCLSKSIHD-ESTPLLAHAVAALIKHRYGRNVPSLREDNKSWERTLATLRYAEMQRISELLALPEARPGKGFFISKTWSTNFRRFEESQARRLK-------------ASMSPGKTESRKTRRRERTESNIMPPWPLINADITCKHGALALSSQ-TRAKRVAVEKRVWRELRHFYPGGNSFSVRQGECIQCTEEVRKRKKAQQQQLDERQEEISLTVLKNLFSRKTGVPPALVRTNEQKQDSSNRVFLSMLPAAQLNLSLFFSPSLTPVTIPSVLSGIYHLIPRCWLQSWRKYVRGGAAP--RHLSTALLLCEGHGRLLVPPHVEDYLVGANASLLKGLEPDRSGCICEIVTPEEWDALTLIYP 1540
            R LP   +     +L+S +L AL   S +    E+  +L   VA+L+KHRYGR  P+LRE++  W R L TLR+AE+  ++ L+  P+ RPGKG+++SK+W+ N RR+ E+QARR +             A++     + +++R RER ESN+MPPW  +NADI C+H  LA SSQ  RAKR  V+KRVWREL  F+P    F     EC +C       +KA++    +R++EI+L VL+ L+ RKTGVP A + T      SS     +  PA  L                  L GIYHL+PR WL +WR YVR   AP  R L TALLLCEGHG LL PPHVE++L G   +LL GL+PDRSGC+CE+VTPEEWDALTL +P
Sbjct:   71 RPLPAVVLQSLFGWLLSTDLSALRASSVAASSPETAAVLETTVASLVKHRYGRANPTLREEDTGWRRDLETLRHAELSHVASLVRGPQ-RPGKGYYLSKSWAGNLRRYVEAQARRRRSPSFASNSAAGSGATVGGSGGKEKRSRGRERAESNLMPPWQDVNADIMCQHRGLARSSQGNRAKRQVVDKRVWRELVLFFPAAVPFRAESVECSECRGLCANERKAEEAVKRQREQEIALPVLRALYGRKTGVPSAALSTPRGTPGSSAGPPSAARPACPL------------------LPGIYHLLPRYWLNAWRAYVRDPRAPSPRTLDTALLLCEGHGLLLAPPHVEEFLSGERRALLGGLDPDRSGCVCEVVTPEEWDALTLCWP 437          
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Match: A0A835YTC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTC4_9STRA)

HSP 1 Score: 285 bits (729), Expect = 1.830e-86
Identity = 167/420 (39.76%), Postives = 231/420 (55.00%), Query Frame = 2
Query:  440 LPRDSITHALTYLVSKELGALSCLSKSIHDESTPLLAHAVAALIKHRYGRNVPSLREDNKSWERTLATLRYAEMQRISELLALPEARPGKGFFISKTWSTNFRRFEESQARRLKASMSPGKTESRKTRRRERTESNIMPPWPLINADITCKHGALALSSQTRAKRVAVEKRVWRELRHFYPGGNSFSVRQGECIQCTEE----VRKRKKAQQQQLDERQEEIS-LTVLKNLFSRKTGVPPALVRTNEQKQDSSNRVFLSMLPAAQLNLSLFFSPSLTPVTIPSVLSGIYHLIPRCWLQSWRKYVR--GGAAPRHLSTALLLCEGHGRLLVPPHVEDYLVGANASLLKGLEPDRSGCICEIVTPEEWDALTLIY-PEDLCVRFCVQPEDGSVAWGLSECKECFRAYIGQCYHTSNTRKGSF 1675
            LP + I  +LTY +S +L AL+C  K++ D      +  V  L+KH Y     +    N +      +LR+AE++ ++ LLA PEA PG+G+++SK W+ NFRRF ESQAR  KAS   G + S K  RR R++S  MPP P +NAD+TC HGAL+ +  TR +R  ++ R WR ++ FYP      VR GEC +C  E             Q+ + R  +++ +  L  L  R+ GVP                   S L    + L++  + +L  +  P +  G+YHL+PRCWL SWR YVR  G   PR L  +LLLC+ HG LLVPPH E +L G    LL  L+ +RSG +CE+VT +EWDAL+  Y P D  VRF + P+  +VAW L  C  C   Y+ Q Y T   RK SF
Sbjct:   23 LPAEVIRRSLTYALSYDLRALTCTCKAVADTLVSESSAVVTHLLKHAYSVKDAAASSGNGA---DFDSLRFAELKHVATLLAAPEAAPGRGYYVSKQWANNFRRFVESQARLRKASTGGGSS-SGKQLRRLRSDSGTMPPCPDVNADLTCSHGALSPAGATRGRRRTLDGRSWRAIKVFYPAARDLRVRDGECARCGAERAAAAXXXXXXXXQEKERRSGDLAAVPALSQLCCRRGGVPT------------------SHLVCGDMRLAIRLAHNLDALP-PPLAPGLYHLVPRCWLSSWRTYVRDPGAPQPRPLDASLLLCDAHGLLLVPPHAEQWLRGDREKLLGALDTERSGYVCEVVTVDEWDALSERYGPCDFSVRFSIAPDGDAVAWSLPRCSRCDPCYVAQTYTTRVPRKLSF 419          
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Match: A0A4D9CUZ8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUZ8_9STRA)

HSP 1 Score: 214 bits (545), Expect = 2.540e-58
Identity = 135/378 (35.71%), Postives = 187/378 (49.47%), Query Frame = 2
Query:  635 LATLRYAEMQRISELLALPEARPGKGFFISKTWSTNFRRFEESQARRLKASMSPGK---------------------TESRKTRRRERTESNIMPPWPLINADITCKHGAL-------------------------ALSSQTRAKRVAVEKRVWRELRHFYPGGNSFSVRQGE-CIQCTEEVRKRKKAQQQQLDERQEEISLT-VLKNLFSRKTGVPPALVRTNEQKQDSSNRVFLSMLPAAQLNLSLFFSPSLTPVTIPSVLSGIYHLIPRCWLQSWRKYVRGGAAPRHL--STALLLCEGHGRLLVPPHVEDYLVGANASLLKGLEPDRSGCICEIVTPEEWDALTLIYPEDLCVRFCVQPEDGSVAWGLSECKEC 1618
            L  LR+ E+Q +  LL+LPE   G G+F+SK W +N RRF E+ + R KA++   +                     +  R+   RER ES +  PW  +NADITC HG L                         A S     KR  +EKR W+ LR +Y  G +F V   E C+QC++  R+ K+  +++   R  E+S +  L  L++R+TG PP+                         + +L  SPS + + +P +  G+YHL+PRCWL  WR Y+R   APR      +LLLCE HG  LVPPH+  +L G    +L  L   RSG +CEIV+ EEWD L   YP D C++F V PED S+AW  S C  C
Sbjct:  167 LEALRFQEVQHLHRLLSLPEPLSG-GYFVSKAWLSNHRRFAEALSARRKAALVQQQHQGGREXXXXXXXXXXDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPALRPSPGSPPSVPSSPASSPLPLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTALYARRTGCPPS-------------------------SFALPPSPSSSALFLPPLDPGLYHLLPRCWLTVWRNYLRDPRAPRPRPPDLSLLLCEAHGLPLVPPHISSFLDGEKKGVLSSLS-GRSGVVCEIVSVEEWDELMKHYPTDYCLKFSVDPEDLSIAWSTSPCARC 517          
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Match: A0A7S3JS94_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JS94_9STRA)

HSP 1 Score: 151 bits (381), Expect = 3.230e-36
Identity = 127/425 (29.88%), Postives = 200/425 (47.06%), Query Frame = 2
Query:  437 ALPRDSITHALTYLVSKELGALSCLSKSIHDESTPLLAHAVAALIKHRYGRNVPSLREDNKSW---ERTLATLRYAEMQRISELLALPEARPGKGFFISKTWSTNFRRFEESQARRLKASMSPGKTESRKTRRRERTESN-IMPPWPLINADITCKHGALALSSQTRAKRVAVEKRVWRELRHFYPGGNSFSVRQGE----CIQCTEEVRKRKKAQQQQLD----------ERQEEISLT-----VLKNLFSR---KTGVPPALVRTNEQKQDSSNRVFLSMLPAAQLNLSLFFSPSLTPVTIPSVLSGIYHLIPRCWLQSWRKYVRGGA--APRHLSTALLLCEGHGRLLVPPHVEDYLVGANASLLKGLEPDRSGCICEIVTPEEWDALTLIYPEDLCVRFCV---QPEDGSVAWGLSECKEC 1618
            ++P D+I  AL+YL + ++ A+    + +  E  P L  +V   +     +   + ++ NK+     R L TLR AE+ +I   L   +    +G+++SK+W+  FRR+ E+Q R L  + S      +++R R R+ S+  +PPWP  NA++ C+HG+L   +  RAKR+ V++  WR + + +P      V        C+Q  EE + R++ ++ +LD          E QEE + T     VL+ L S+   K G+P   +  +                AAQ   +L    +      P +L G YHL+PR WLQ WR  +R      P   +T  LLC  H + LVP  +  YL G +A  L    P  S   CE++  +EW AL  +YP D  V F V    P    + W    C  C
Sbjct:    5 SIPNDAILQALSYLGASDISAIYITGR-VAVEDIPGLCASVGGEVFQNLLKKQTTPKKKNKNELAAGRALQTLRVAELVKILNGLNDAQESGTRGYWVSKSWAQQFRRYTEAQ-RLLLGTESASPNNGQRSRGRSRSSSSESLPPWPDANAELLCEHGSLGPRNGPRAKRLIVDRSTWRTIAYRFPLSTKLKVSSAAECRFCLQIKEERQIRQQEERSRLDHEKQKRLSELETQEEATHTKSTSSVLRRLASKERAKRGIPQHCLSAD----------------AAQERQALGLCGT------PPLLVGRYHLVPRGWLQLWRSSLRSARHRRPGPPNTGDLLCMAHCKPLVPHELVTYLHG-HAHRLTFPNPPNSST-CEVLDAQEWTALNNLYPVDFAVAFDVTWSSPHTLHITWATEPCTLC 403          
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Match: A0A482SYA4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYA4_9ARCH)

HSP 1 Score: 145 bits (366), Expect = 2.830e-35
Identity = 103/342 (30.12%), Postives = 155/342 (45.32%), Query Frame = 2
Query:  674 ELLALPEARPGKGFFISKTWSTNFRRFEESQARRLKASMSPGKTESRKTRRRERTESNIMPPWPLINADITCKHGALALSSQTRAKRVAVEKRVWRELRHFYPGGNSFSVRQGECIQCTEE-------VRKRKKAQQQQLDERQEEISLTVLKNLFSRKTGVPPALVRTNEQKQDSSNRVFLSMLPAAQLNLSLFFSPSLTPVTIPSVLSGIYHLIPRCWLQSWRKYVRGGAAPRH--LSTALLLCEGHGRLLVPPHVEDYLVGANASLLKGLEPDRSGCICEIVTPEEWDALTLIYP--EDLCVRFCVQPEDGSVAWGLSECKECFRAYIGQCYHTSNTRK 1666
            E L LP+       + S T ST+ +                G  + + T+ R+R  S  +PPWP++NAD+ C H  L +     A+R A++ R W  +R +Y  G  F     EC  C  +       V ++K+A+   L++R+ E+    L  L  RK GVP   V      ++                      P  T      +  G+Y+L+PR WL+ WR+Y R   AP    L    L+C  HG L++PPH+E+Y++G   SLL GL     G + E+V  EEWD L  +     D  VRFC+   DGS++W +  C  C         +T+N R+
Sbjct:    9 ESLTLPDVETNTANYYSITVSTSKK----------------GMPKKKATKMRQRRGSEALPPWPVVNADLICPHSQLTIGKAPNARRKAIDSRAWLAIRRYYGLGPEFRCSAIECPSCLSDQHQSLQSVAEKKEAE---LEQRRLELVPPTLLALLERKQGVPEHCVHREHIDEEE---------------------PMYT------LREGLYNLVPRDWLRQWRRYTRDLTAPSLTVLDCTRLICYSHGLLVLPPHLEEYILGVRRSLLGGLGT-YEGEVVELVCAEEWDELLRVNKGMTDFGVRFCLH--DGSLSWNVGVCHVCDP--FSYATYTNNNRE 299          
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Match: H3GJA1_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJA1_PHYRM)

HSP 1 Score: 100 bits (249), Expect = 5.630e-19
Identity = 116/431 (26.91%), Postives = 181/431 (42.00%), Query Frame = 2
Query:  440 LPRDSITHALTYLVSKELGALSCLSKSIHDESTPLLAHAVAALIKHRYGRNVPSLREDNKSWERTLATLRYAEMQRISELLALPEARPGKG--------FFISKTWSTNFRR----FEE---------SQARRLKASMSPGKTESRKTRRRERTESNIMPPWPLINADITCKHGALALSSQT--RAKRVAVEKRVWRELRHFYPGGNSFSVRQG-ECIQCTEEVRKRKKAQQQQLDERQEE------ISLTVLKNLFSRKTGVPPALVRTNEQKQDSSNRVFLSMLPAAQLNLSLFFSPSLTPVTIPSVLSGIYHLIPRCWLQSWRKYVR--GGAAPRHLSTALLLCEGHGRLLVPPHVEDYLVGAN------ASLLKGLEPDRSGCICEIVTPEEWDALTLIYPEDLCVRFCVQPEDGSVAWGLSECKEC 1618
            LP   + H  + L S+++  L+   +S+   S+  +  A+  +I  ++G     LR     W R+L  LR AE+ RI ELLA    R  +           +S+ W   +++    FE+          Q RR  A+     +E  K +    +  +         A I C H AL  ++Q   R++R  +   V+RE+  + P    F +R   +CI C  E    ++A++ + +ER+             +  L  RK G P  L       QDS  R    + P   +N    ++               Y L+P+ WL  WRKYVR  G  AP  +  A L+C  H R +VPP++  +L G +      A+   G  P R     EIVT  EW+AL   Y  +  V F V   +G+  W   EC+ C
Sbjct:    4 LPEGLLAHLFSLLSSRDVLQLTSTCRSL-SASSACVQLALERVITRQFGDVTDFLRASVDHWPRSLTVLRGAELLRIKELLARSSTRSFEDAALCAPSCVVVSRAWLGAYKKRCQAFEQFLLQFRHTKRQQRRQNAAKKKDNSEPEKLKIAANSSLDE------AGAMIVCAHDALLPAAQCVGRSRRSIISGDVFREIAIYAPELRGFPLRSCCDCITCVLE----QEARELEAEERKRARFDGQIAGSEAMLQLLERKNGFPKGLF----SPQDSVGRQ-QQLAPHLSVNGRSKYAT--------------YFLVPKKWLNKWRKYVRSQGDDAPGPVLNAELVCLSHQRTIVPPYISMFLSGFSLEQSLKATQALGTTPARQ---YEIVTFGEWEALYDRYCAEFAVGFDVV--NGAYHWRTQECQIC 399          
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Match: W7TU35_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TU35_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.210e-15
Identity = 80/271 (29.52%), Postives = 119/271 (43.91%), Query Frame = 2
Query:  635 LATLRYAEMQRISELLALPEARPGKGFFISKTWSTNFRRFEESQARRLKASMSPGKTES---------------------RKTRRRERTESNIMPPWPLINADITCKHGAL-------------------------ALSSQTRAKRVAVEKRVWRELRHFYPGGNSFSVRQGE-CIQCTEEVRKRKKAQQQQLDERQEEISLTVLKNLFSRKTGVPPALVRTNEQKQDSSNRVFLSMLPAAQLNLSLFFSPSLTPVTIPSVLSGIYHLIPR 1306
            L  LR+ E+Q +  LL+LPE   G G+++SK W +N RRF E+ + R KA++   + +                      R+   RER ES +  PW  +NADITC HG L                         A S     KR  +EKR W+ LR +Y  G +F V   E C+QC++  R+ K+  +++   R  E+S +           +PP L+R        S  + L  LP+     +L  SPSL       ++ G+  L PR
Sbjct:  227 LEALRFQEVQHLHRLLSLPEPFSG-GYYVSKAWLSNHRRFAEALSARRKAALLQQQQQGGREXXXXXXXXXXDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPXXXXXXXXXLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTAL-----LPPLLLRP------PSFLLLLRPLPSPARPRALPPSPSL-------LVDGLAQLPPR 478          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FP71_ECTSI3.490e-9445.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTC4_9STRA1.830e-8639.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CUZ8_9STRA2.540e-5835.71Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3JS94_9STRA3.230e-3629.88Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A482SYA4_9ARCH2.830e-3530.12Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
H3GJA1_PHYRM5.630e-1926.91Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
W7TU35_9STRA1.210e-1529.52Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1036contigC-australica_Contig_1036:4089..6922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FP71
Model size1880
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons13
Evalue9.35e-97
EggNOG OGs2CQHN@1|root,2S453@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_000610.1
Cds size1452
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586773.022854-UTR-C-australica_Contig_1036:4088..43141682586773.022854-UTR-C-australica_Contig_1036:4088..4314Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1036 4089..4314 +
1682586773.156901-UTR-C-australica_Contig_1036:6720..69221682586773.156901-UTR-C-australica_Contig_1036:6720..6922Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1036 6721..6922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586773.0342093-CDS-C-australica_Contig_1036:4314..43681682586773.0342093-CDS-C-australica_Contig_1036:4314..4368Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1036 4315..4368 +
1682586773.0442915-CDS-C-australica_Contig_1036:4437..46611682586773.0442915-CDS-C-australica_Contig_1036:4437..4661Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1036 4438..4661 +
1682586773.05387-CDS-C-australica_Contig_1036:4727..48021682586773.05387-CDS-C-australica_Contig_1036:4727..4802Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1036 4728..4802 +
1682586773.0635169-CDS-C-australica_Contig_1036:4901..49701682586773.0635169-CDS-C-australica_Contig_1036:4901..4970Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1036 4902..4970 +
1682586773.0716076-CDS-C-australica_Contig_1036:5046..51551682586773.0716076-CDS-C-australica_Contig_1036:5046..5155Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1036 5047..5155 +
1682586773.0792935-CDS-C-australica_Contig_1036:5237..53021682586773.0792935-CDS-C-australica_Contig_1036:5237..5302Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1036 5238..5302 +
1682586773.0873566-CDS-C-australica_Contig_1036:5385..54891682586773.0873566-CDS-C-australica_Contig_1036:5385..5489Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1036 5386..5489 +
1682586773.0961251-CDS-C-australica_Contig_1036:5606..57581682586773.0961251-CDS-C-australica_Contig_1036:5606..5758Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1036 5607..5758 +
1682586773.104774-CDS-C-australica_Contig_1036:5841..59501682586773.104774-CDS-C-australica_Contig_1036:5841..5950Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1036 5842..5950 +
1682586773.1140246-CDS-C-australica_Contig_1036:5985..61541682586773.1140246-CDS-C-australica_Contig_1036:5985..6154Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1036 5986..6154 +
1682586773.1233125-CDS-C-australica_Contig_1036:6223..63351682586773.1233125-CDS-C-australica_Contig_1036:6223..6335Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1036 6224..6335 +
1682586773.1335955-CDS-C-australica_Contig_1036:6446..65541682586773.1335955-CDS-C-australica_Contig_1036:6446..6554Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1036 6447..6554 +
1682586773.14514-CDS-C-australica_Contig_1036:6618..67201682586773.14514-CDS-C-australica_Contig_1036:6618..6720Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1036 6619..6720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1036.4.4prot_C-australica_Contig_1036.4.4Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1036 4315..6720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1036.4.4

>prot_C-australica_Contig_1036.4.4 ID=prot_C-australica_Contig_1036.4.4|Name=mRNA_C-australica_Contig_1036.4.4|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=484bp
MKLVTAAVDDVQSPSKAKLPADEGAAVAPMSGDTMTAVTTLSPQCTGTGC
CTSVNPSSTLLLGARTRCGRALPRDSITHALTYLVSKELGALSCLSKSIH
DESTPLLAHAVAALIKHRYGRNVPSLREDNKSWERTLATLRYAEMQRISE
LLALPEARPGKGFFISKTWSTNFRRFEESQARRLKASMSPGKTESRKTRR
RERTESNIMPPWPLINADITCKHGALALSSQTRAKRVAVEKRVWRELRHF
YPGGNSFSVRQGECIQCTEEVRKRKKAQQQQLDERQEEISLTVLKNLFSR
KTGVPPALVRTNEQKQDSSNRVFLSMLPAAQLNLSLFFSPSLTPVTIPSV
LSGIYHLIPRCWLQSWRKYVRGGAAPRHLSTALLLCEGHGRLLVPPHVED
YLVGANASLLKGLEPDRSGCICEIVTPEEWDALTLIYPEDLCVRFCVQPE
DGSVAWGLSECKECFRAYIGQCYHTSNTRKGSF*
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mRNA from alignment at C-australica_Contig_1036:4089..6922+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1036.4.4 ID=mRNA_C-australica_Contig_1036.4.4|Name=mRNA_C-australica_Contig_1036.4.4|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2834bp|location=Sequence derived from alignment at C-australica_Contig_1036:4089..6922+ (Chrysoparadoxa australica CS_1217)
GCTGTAGAGTTAAAGCTAAAGGGGGTGCCTCCTTCCTATACACTCTACCT TACGCAAGTCAGAGCAAATCAAGTTTTCAAAGCCTTCCAACCCAGCGTCT TTTCCCCTCTCCTCTTAAGTCGTTTTAAAGCTGTAGCAGTTGTCCCTGAT ACGGTGTTGCCCCGTACAAAACTGGCAACGTGATTCAAGAGGAGCGAAAG GTTAAAAGGTTGCACCTCCGTACAGGATGAAGCTGGTCACTGCTGCTGTT GATGATGTTCAATCACCATCAAAGGCCAAGGTGAAGAAACTTTTCCCCCC CCCTCCCCCTCACCGTCGCCCTGACCCCCTCTGCTCCCGCAAACCACAGC TGCCAGCTGATGAAGGTGCAGCAGTTGCACCAATGAGTGGTGACACTATG ACTGCAGTCACCACCCTTAGTCCTCAGTGCACTGGTACTGGCTGTTGCAC TAGTGTCAACCCCAGCTCTACCCTCCTACTGGGGGCAAGGACCAGGTGTG GCCGTGCGCTGCCACGGGACTCCATCACTCATGCCCTCACCTACCTTGTA TCCAAGGAACTGGGTGCTTTGAGGTAGGGGTCTTCAAACTCTCGAACGCC TACACTCTGCATCACTTATTCGCCCCTCGTTTCACACAGTTGTCTAAGTA AGAGCATCCATGACGAGTCTACTCCACTACTGGCTCATGCAGTGGCTGCG TTAATTAAGCACAGGTAAAAAAAAACTAGGATTATGAAAGCTCAGCTGGT CAGCCATCTCTATGTGCCTCACCCACTCACCCCCTGGTTCAAAATGCCCC TGGCTGCCTGCAGGTATGGGAGAAATGTCCCTTCTCTGAGGGAGGATAAC AAGAGCTGGGAAAGGACCCTTGCAACCCTAAGGTAATGCTATGCATCAAG AAGGCTAAGGACATGAAACAGGTTGCCCCTGACCCCACAGCGCTGCTTCT GTCAACAGATATGCTGAGATGCAGCGAATCAGTGAGCTGCTAGCTCTCCC GGAGGCCAGACCTGGCAAAGGCTTCTTCATCTCCAAGACATGGAGCACAA ACTTCAGGCGCTTTGAGGTAGCCACAAAACCATTCCTGTAGTACCTGAGC TTTAATTTAATGGAACACTTACGACCGACCCCTCTTCTAATCACCCTAGG AGTCCCAAGCTAGACGGTTGAAGGCCTCCATGTCCCCCGGGAAGACGGAA AGCAGAAAGACCAGGTAAGGTGGCCTATTTTGGCAGCTTGCTCGGTTGGC ACTCGCTGTGCCTCCGTCATTCTCTGTCTGAATGCTGCTTTCCTCAGGCG GCGAGAGCGCACGGAGAGCAACATCATGCCTCCGTGGCCCTTGATCAACG CAGACATCACGTGCAAGCATGGAGCCCTTGCACTCAGCTCTCAAACCAGA GGTGAGATGGGTTGTTGAATTGATCATTGAACCAATTGGTAATTAAACAG GGACACTGGGAATAGACCACACAGTTGTACAAAGGCATGACCCTTCCTCT TCTGCTTTCTCTTTGCAGCCAAGCGTGTTGCTGTGGAGAAACGCGTTTGG CGAGAGCTGCGTCACTTTTACCCAGGTGGCAATAGCTTTAGTGTTAGGCA AGGAGAGTGCATCCAGTGCACTGAGGAGGTTCGTAAGAGAAAGAAGGCCC AGCAGCAGCAGCTGGATGAGGTAAAGCTGCTCACTCATGTCCCCACGTGG TGGTTTCTCTTCTCTCCTCCGTAACAACGTGCCTTTCACAGAAGAAGTGC AAGCGCCAAGAAGAGATTTCCTTGACGGTGCTAAAGAACCTCTTCAGCCG CAAGACCGGTGTACCACCCGCACTTGTTCGCACCAATGAACAGAAGCAGG ACTCCAGCAACCGTAACCCATTGCTGCCAGGTCGAGTCGAATCGGAGGTG TTTTTCTTTCAATGCTGCCTGCTGCGCAGCTCAACCTCTCTCTCTTCTTC TCTCCAAGCTTAACACCAGTCACCATCCCCTCTGTTCTGTCAGGCATTTA CCACCTAATACCACGCTGCTGGCTGCAGTCATGGAGAAAGTACGTGAGAG GAGGGGCTGCACCAAGGTATGAATGCACTAGCATCAGCGTCACTGGCTCC TTACACTCTCACTCATCTATCTTCCCCATGCTTAGGCACCTCTCTACAGC ACTCCTCTTGTGCGAGGGCCACGGCAGGCTTCTGGTGCCTCCCCACGTGG AAGACTACCTCGTGGGTGCCAACGCCAGCCTCCTTAAGGGGCTAGAAGTA AGTTGCAACACGAGCTTTTTTGCTTTGGGAAGGGACCTCAGGCACTCTGG CTTAAGGCTTAAGAATGCTTTCCCTCACCCCTAACCCACTGTCCCCCCCT CCCACCAGCCTGACCGCAGTGGTTGCATCTGTGAGATTGTGACTCCGGAG GAGTGGGATGCTCTCACTCTCATATACCCGGAGGATTTGTGCGTGCGCTT TTGCGTTCAGCCTGAGGTGAGGAAGCTGAGCATTACGATCCCCCCCATGG CCCGCCATCCTTACCTTCGTGTCCTATCAGGATGGTTCCGTCGCCTGGGG GCTAAGTGAGTGTAAGGAATGTTTCCGGGCGTACATCGGGCAGTGCTACC ACACATCAAACACGAGGAAGGGTAGCTTCTAGGAGGGAGAAGGAGGATAA TCGTAAGGTTTTCGCCAACTTTGTGTTGGGGCCAGCAGCGGGCTGGGGTA ATGTTAAAAGACGTGGCGACGGTGTGTAATCCGGAAGTGAAAGAGCCACC ACCCAAATGGTTCTGCTAGGCCGCCCATAGACGCAGCAGGGGGGTGGCTC AAGCTCTGTACTCTAGAGGCAACATCAATAAGGG
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Coding sequence (CDS) from alignment at C-australica_Contig_1036:4089..6922+

>mRNA_C-australica_Contig_1036.4.4 ID=mRNA_C-australica_Contig_1036.4.4|Name=mRNA_C-australica_Contig_1036.4.4|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1452bp|location=Sequence derived from alignment at C-australica_Contig_1036:4089..6922+ (Chrysoparadoxa australica CS_1217)
ATGAAGCTGGTCACTGCTGCTGTTGATGATGTTCAATCACCATCAAAGGC
CAAGCTGCCAGCTGATGAAGGTGCAGCAGTTGCACCAATGAGTGGTGACA
CTATGACTGCAGTCACCACCCTTAGTCCTCAGTGCACTGGTACTGGCTGT
TGCACTAGTGTCAACCCCAGCTCTACCCTCCTACTGGGGGCAAGGACCAG
GTGTGGCCGTGCGCTGCCACGGGACTCCATCACTCATGCCCTCACCTACC
TTGTATCCAAGGAACTGGGTGCTTTGAGTTGTCTAAGTAAGAGCATCCAT
GACGAGTCTACTCCACTACTGGCTCATGCAGTGGCTGCGTTAATTAAGCA
CAGGTATGGGAGAAATGTCCCTTCTCTGAGGGAGGATAACAAGAGCTGGG
AAAGGACCCTTGCAACCCTAAGATATGCTGAGATGCAGCGAATCAGTGAG
CTGCTAGCTCTCCCGGAGGCCAGACCTGGCAAAGGCTTCTTCATCTCCAA
GACATGGAGCACAAACTTCAGGCGCTTTGAGGAGTCCCAAGCTAGACGGT
TGAAGGCCTCCATGTCCCCCGGGAAGACGGAAAGCAGAAAGACCAGGCGG
CGAGAGCGCACGGAGAGCAACATCATGCCTCCGTGGCCCTTGATCAACGC
AGACATCACGTGCAAGCATGGAGCCCTTGCACTCAGCTCTCAAACCAGAG
CCAAGCGTGTTGCTGTGGAGAAACGCGTTTGGCGAGAGCTGCGTCACTTT
TACCCAGGTGGCAATAGCTTTAGTGTTAGGCAAGGAGAGTGCATCCAGTG
CACTGAGGAGGTTCGTAAGAGAAAGAAGGCCCAGCAGCAGCAGCTGGATG
AGCGCCAAGAAGAGATTTCCTTGACGGTGCTAAAGAACCTCTTCAGCCGC
AAGACCGGTGTACCACCCGCACTTGTTCGCACCAATGAACAGAAGCAGGA
CTCCAGCAACCGTGTTTTTCTTTCAATGCTGCCTGCTGCGCAGCTCAACC
TCTCTCTCTTCTTCTCTCCAAGCTTAACACCAGTCACCATCCCCTCTGTT
CTGTCAGGCATTTACCACCTAATACCACGCTGCTGGCTGCAGTCATGGAG
AAAGTACGTGAGAGGAGGGGCTGCACCAAGGCACCTCTCTACAGCACTCC
TCTTGTGCGAGGGCCACGGCAGGCTTCTGGTGCCTCCCCACGTGGAAGAC
TACCTCGTGGGTGCCAACGCCAGCCTCCTTAAGGGGCTAGAACCTGACCG
CAGTGGTTGCATCTGTGAGATTGTGACTCCGGAGGAGTGGGATGCTCTCA
CTCTCATATACCCGGAGGATTTGTGCGTGCGCTTTTGCGTTCAGCCTGAG
GATGGTTCCGTCGCCTGGGGGCTAAGTGAGTGTAAGGAATGTTTCCGGGC
GTACATCGGGCAGTGCTACCACACATCAAACACGAGGAAGGGTAGCTTCT
AG
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