mRNA_C-australica_Contig_1036.4.4 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Match: D7FP71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP71_ECTSI) HSP 1 Score: 306 bits (783), Expect = 3.490e-94 Identity = 175/386 (45.34%), Postives = 233/386 (60.36%), Query Frame = 2
Query: 434 RALPRDSITHALTYLVSKELGALSCLSKSIHD-ESTPLLAHAVAALIKHRYGRNVPSLREDNKSWERTLATLRYAEMQRISELLALPEARPGKGFFISKTWSTNFRRFEESQARRLK-------------ASMSPGKTESRKTRRRERTESNIMPPWPLINADITCKHGALALSSQ-TRAKRVAVEKRVWRELRHFYPGGNSFSVRQGECIQCTEEVRKRKKAQQQQLDERQEEISLTVLKNLFSRKTGVPPALVRTNEQKQDSSNRVFLSMLPAAQLNLSLFFSPSLTPVTIPSVLSGIYHLIPRCWLQSWRKYVRGGAAP--RHLSTALLLCEGHGRLLVPPHVEDYLVGANASLLKGLEPDRSGCICEIVTPEEWDALTLIYP 1540
R LP + +L+S +L AL S + E+ +L VA+L+KHRYGR P+LRE++ W R L TLR+AE+ ++ L+ P+ RPGKG+++SK+W+ N RR+ E+QARR + A++ + +++R RER ESN+MPPW +NADI C+H LA SSQ RAKR V+KRVWREL F+P F EC +C +KA++ +R++EI+L VL+ L+ RKTGVP A + T SS + PA L L GIYHL+PR WL +WR YVR AP R L TALLLCEGHG LL PPHVE++L G +LL GL+PDRSGC+CE+VTPEEWDALTL +P
Sbjct: 71 RPLPAVVLQSLFGWLLSTDLSALRASSVAASSPETAAVLETTVASLVKHRYGRANPTLREEDTGWRRDLETLRHAELSHVASLVRGPQ-RPGKGYYLSKSWAGNLRRYVEAQARRRRSPSFASNSAAGSGATVGGSGGKEKRSRGRERAESNLMPPWQDVNADIMCQHRGLARSSQGNRAKRQVVDKRVWRELVLFFPAAVPFRAESVECSECRGLCANERKAEEAVKRQREQEIALPVLRALYGRKTGVPSAALSTPRGTPGSSAGPPSAARPACPL------------------LPGIYHLLPRYWLNAWRAYVRDPRAPSPRTLDTALLLCEGHGLLLAPPHVEEFLSGERRALLGGLDPDRSGCVCEVVTPEEWDALTLCWP 437
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Match: A0A835YTC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTC4_9STRA) HSP 1 Score: 285 bits (729), Expect = 1.830e-86 Identity = 167/420 (39.76%), Postives = 231/420 (55.00%), Query Frame = 2
Query: 440 LPRDSITHALTYLVSKELGALSCLSKSIHDESTPLLAHAVAALIKHRYGRNVPSLREDNKSWERTLATLRYAEMQRISELLALPEARPGKGFFISKTWSTNFRRFEESQARRLKASMSPGKTESRKTRRRERTESNIMPPWPLINADITCKHGALALSSQTRAKRVAVEKRVWRELRHFYPGGNSFSVRQGECIQCTEE----VRKRKKAQQQQLDERQEEIS-LTVLKNLFSRKTGVPPALVRTNEQKQDSSNRVFLSMLPAAQLNLSLFFSPSLTPVTIPSVLSGIYHLIPRCWLQSWRKYVR--GGAAPRHLSTALLLCEGHGRLLVPPHVEDYLVGANASLLKGLEPDRSGCICEIVTPEEWDALTLIY-PEDLCVRFCVQPEDGSVAWGLSECKECFRAYIGQCYHTSNTRKGSF 1675
LP + I +LTY +S +L AL+C K++ D + V L+KH Y + N + +LR+AE++ ++ LLA PEA PG+G+++SK W+ NFRRF ESQAR KAS G + S K RR R++S MPP P +NAD+TC HGAL+ + TR +R ++ R WR ++ FYP VR GEC +C E Q+ + R +++ + L L R+ GVP S L + L++ + +L + P + G+YHL+PRCWL SWR YVR G PR L +LLLC+ HG LLVPPH E +L G LL L+ +RSG +CE+VT +EWDAL+ Y P D VRF + P+ +VAW L C C Y+ Q Y T RK SF
Sbjct: 23 LPAEVIRRSLTYALSYDLRALTCTCKAVADTLVSESSAVVTHLLKHAYSVKDAAASSGNGA---DFDSLRFAELKHVATLLAAPEAAPGRGYYVSKQWANNFRRFVESQARLRKASTGGGSS-SGKQLRRLRSDSGTMPPCPDVNADLTCSHGALSPAGATRGRRRTLDGRSWRAIKVFYPAARDLRVRDGECARCGAERAAAAXXXXXXXXQEKERRSGDLAAVPALSQLCCRRGGVPT------------------SHLVCGDMRLAIRLAHNLDALP-PPLAPGLYHLVPRCWLSSWRTYVRDPGAPQPRPLDASLLLCDAHGLLLVPPHAEQWLRGDREKLLGALDTERSGYVCEVVTVDEWDALSERYGPCDFSVRFSIAPDGDAVAWSLPRCSRCDPCYVAQTYTTRVPRKLSF 419
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Match: A0A4D9CUZ8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUZ8_9STRA) HSP 1 Score: 214 bits (545), Expect = 2.540e-58 Identity = 135/378 (35.71%), Postives = 187/378 (49.47%), Query Frame = 2
Query: 635 LATLRYAEMQRISELLALPEARPGKGFFISKTWSTNFRRFEESQARRLKASMSPGK---------------------TESRKTRRRERTESNIMPPWPLINADITCKHGAL-------------------------ALSSQTRAKRVAVEKRVWRELRHFYPGGNSFSVRQGE-CIQCTEEVRKRKKAQQQQLDERQEEISLT-VLKNLFSRKTGVPPALVRTNEQKQDSSNRVFLSMLPAAQLNLSLFFSPSLTPVTIPSVLSGIYHLIPRCWLQSWRKYVRGGAAPRHL--STALLLCEGHGRLLVPPHVEDYLVGANASLLKGLEPDRSGCICEIVTPEEWDALTLIYPEDLCVRFCVQPEDGSVAWGLSECKEC 1618
L LR+ E+Q + LL+LPE G G+F+SK W +N RRF E+ + R KA++ + + R+ RER ES + PW +NADITC HG L A S KR +EKR W+ LR +Y G +F V E C+QC++ R+ K+ +++ R E+S + L L++R+TG PP+ + +L SPS + + +P + G+YHL+PRCWL WR Y+R APR +LLLCE HG LVPPH+ +L G +L L RSG +CEIV+ EEWD L YP D C++F V PED S+AW S C C
Sbjct: 167 LEALRFQEVQHLHRLLSLPEPLSG-GYFVSKAWLSNHRRFAEALSARRKAALVQQQHQGGREXXXXXXXXXXDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPALRPSPGSPPSVPSSPASSPLPLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTALYARRTGCPPS-------------------------SFALPPSPSSSALFLPPLDPGLYHLLPRCWLTVWRNYLRDPRAPRPRPPDLSLLLCEAHGLPLVPPHISSFLDGEKKGVLSSLS-GRSGVVCEIVSVEEWDELMKHYPTDYCLKFSVDPEDLSIAWSTSPCARC 517
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Match: A0A7S3JS94_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JS94_9STRA) HSP 1 Score: 151 bits (381), Expect = 3.230e-36 Identity = 127/425 (29.88%), Postives = 200/425 (47.06%), Query Frame = 2
Query: 437 ALPRDSITHALTYLVSKELGALSCLSKSIHDESTPLLAHAVAALIKHRYGRNVPSLREDNKSW---ERTLATLRYAEMQRISELLALPEARPGKGFFISKTWSTNFRRFEESQARRLKASMSPGKTESRKTRRRERTESN-IMPPWPLINADITCKHGALALSSQTRAKRVAVEKRVWRELRHFYPGGNSFSVRQGE----CIQCTEEVRKRKKAQQQQLD----------ERQEEISLT-----VLKNLFSR---KTGVPPALVRTNEQKQDSSNRVFLSMLPAAQLNLSLFFSPSLTPVTIPSVLSGIYHLIPRCWLQSWRKYVRGGA--APRHLSTALLLCEGHGRLLVPPHVEDYLVGANASLLKGLEPDRSGCICEIVTPEEWDALTLIYPEDLCVRFCV---QPEDGSVAWGLSECKEC 1618
++P D+I AL+YL + ++ A+ + + E P L +V + + + ++ NK+ R L TLR AE+ +I L + +G+++SK+W+ FRR+ E+Q R L + S +++R R R+ S+ +PPWP NA++ C+HG+L + RAKR+ V++ WR + + +P V C+Q EE + R++ ++ +LD E QEE + T VL+ L S+ K G+P + + AAQ +L + P +L G YHL+PR WLQ WR +R P +T LLC H + LVP + YL G +A L P S CE++ +EW AL +YP D V F V P + W C C
Sbjct: 5 SIPNDAILQALSYLGASDISAIYITGR-VAVEDIPGLCASVGGEVFQNLLKKQTTPKKKNKNELAAGRALQTLRVAELVKILNGLNDAQESGTRGYWVSKSWAQQFRRYTEAQ-RLLLGTESASPNNGQRSRGRSRSSSSESLPPWPDANAELLCEHGSLGPRNGPRAKRLIVDRSTWRTIAYRFPLSTKLKVSSAAECRFCLQIKEERQIRQQEERSRLDHEKQKRLSELETQEEATHTKSTSSVLRRLASKERAKRGIPQHCLSAD----------------AAQERQALGLCGT------PPLLVGRYHLVPRGWLQLWRSSLRSARHRRPGPPNTGDLLCMAHCKPLVPHELVTYLHG-HAHRLTFPNPPNSST-CEVLDAQEWTALNNLYPVDFAVAFDVTWSSPHTLHITWATEPCTLC 403
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Match: A0A482SYA4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYA4_9ARCH) HSP 1 Score: 145 bits (366), Expect = 2.830e-35 Identity = 103/342 (30.12%), Postives = 155/342 (45.32%), Query Frame = 2
Query: 674 ELLALPEARPGKGFFISKTWSTNFRRFEESQARRLKASMSPGKTESRKTRRRERTESNIMPPWPLINADITCKHGALALSSQTRAKRVAVEKRVWRELRHFYPGGNSFSVRQGECIQCTEE-------VRKRKKAQQQQLDERQEEISLTVLKNLFSRKTGVPPALVRTNEQKQDSSNRVFLSMLPAAQLNLSLFFSPSLTPVTIPSVLSGIYHLIPRCWLQSWRKYVRGGAAPRH--LSTALLLCEGHGRLLVPPHVEDYLVGANASLLKGLEPDRSGCICEIVTPEEWDALTLIYP--EDLCVRFCVQPEDGSVAWGLSECKECFRAYIGQCYHTSNTRK 1666
E L LP+ + S T ST+ + G + + T+ R+R S +PPWP++NAD+ C H L + A+R A++ R W +R +Y G F EC C + V ++K+A+ L++R+ E+ L L RK GVP V ++ P T + G+Y+L+PR WL+ WR+Y R AP L L+C HG L++PPH+E+Y++G SLL GL G + E+V EEWD L + D VRFC+ DGS++W + C C +T+N R+
Sbjct: 9 ESLTLPDVETNTANYYSITVSTSKK----------------GMPKKKATKMRQRRGSEALPPWPVVNADLICPHSQLTIGKAPNARRKAIDSRAWLAIRRYYGLGPEFRCSAIECPSCLSDQHQSLQSVAEKKEAE---LEQRRLELVPPTLLALLERKQGVPEHCVHREHIDEEE---------------------PMYT------LREGLYNLVPRDWLRQWRRYTRDLTAPSLTVLDCTRLICYSHGLLVLPPHLEEYILGVRRSLLGGLGT-YEGEVVELVCAEEWDELLRVNKGMTDFGVRFCLH--DGSLSWNVGVCHVCDP--FSYATYTNNNRE 299
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Match: H3GJA1_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJA1_PHYRM) HSP 1 Score: 100 bits (249), Expect = 5.630e-19 Identity = 116/431 (26.91%), Postives = 181/431 (42.00%), Query Frame = 2
Query: 440 LPRDSITHALTYLVSKELGALSCLSKSIHDESTPLLAHAVAALIKHRYGRNVPSLREDNKSWERTLATLRYAEMQRISELLALPEARPGKG--------FFISKTWSTNFRR----FEE---------SQARRLKASMSPGKTESRKTRRRERTESNIMPPWPLINADITCKHGALALSSQT--RAKRVAVEKRVWRELRHFYPGGNSFSVRQG-ECIQCTEEVRKRKKAQQQQLDERQEE------ISLTVLKNLFSRKTGVPPALVRTNEQKQDSSNRVFLSMLPAAQLNLSLFFSPSLTPVTIPSVLSGIYHLIPRCWLQSWRKYVR--GGAAPRHLSTALLLCEGHGRLLVPPHVEDYLVGAN------ASLLKGLEPDRSGCICEIVTPEEWDALTLIYPEDLCVRFCVQPEDGSVAWGLSECKEC 1618
LP + H + L S+++ L+ +S+ S+ + A+ +I ++G LR W R+L LR AE+ RI ELLA R + +S+ W +++ FE+ Q RR A+ +E K + + + A I C H AL ++Q R++R + V+RE+ + P F +R +CI C E ++A++ + +ER+ + L RK G P L QDS R + P +N ++ Y L+P+ WL WRKYVR G AP + A L+C H R +VPP++ +L G + A+ G P R EIVT EW+AL Y + V F V +G+ W EC+ C
Sbjct: 4 LPEGLLAHLFSLLSSRDVLQLTSTCRSL-SASSACVQLALERVITRQFGDVTDFLRASVDHWPRSLTVLRGAELLRIKELLARSSTRSFEDAALCAPSCVVVSRAWLGAYKKRCQAFEQFLLQFRHTKRQQRRQNAAKKKDNSEPEKLKIAANSSLDE------AGAMIVCAHDALLPAAQCVGRSRRSIISGDVFREIAIYAPELRGFPLRSCCDCITCVLE----QEARELEAEERKRARFDGQIAGSEAMLQLLERKNGFPKGLF----SPQDSVGRQ-QQLAPHLSVNGRSKYAT--------------YFLVPKKWLNKWRKYVRSQGDDAPGPVLNAELVCLSHQRTIVPPYISMFLSGFSLEQSLKATQALGTTPARQ---YEIVTFGEWEALYDRYCAEFAVGFDVV--NGAYHWRTQECQIC 399
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Match: W7TU35_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TU35_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.210e-15 Identity = 80/271 (29.52%), Postives = 119/271 (43.91%), Query Frame = 2
Query: 635 LATLRYAEMQRISELLALPEARPGKGFFISKTWSTNFRRFEESQARRLKASMSPGKTES---------------------RKTRRRERTESNIMPPWPLINADITCKHGAL-------------------------ALSSQTRAKRVAVEKRVWRELRHFYPGGNSFSVRQGE-CIQCTEEVRKRKKAQQQQLDERQEEISLTVLKNLFSRKTGVPPALVRTNEQKQDSSNRVFLSMLPAAQLNLSLFFSPSLTPVTIPSVLSGIYHLIPR 1306
L LR+ E+Q + LL+LPE G G+++SK W +N RRF E+ + R KA++ + + R+ RER ES + PW +NADITC HG L A S KR +EKR W+ LR +Y G +F V E C+QC++ R+ K+ +++ R E+S + +PP L+R S + L LP+ +L SPSL ++ G+ L PR
Sbjct: 227 LEALRFQEVQHLHRLLSLPEPFSG-GYYVSKAWLSNHRRFAEALSARRKAALLQQQQQGGREXXXXXXXXXXDRERSSSGRRRNSRERRESEVSVPWGEVNADITCAHGGLMPVQRPSPGSPSSVPXXXXXXXXXLAGSGLVMGKRKIIEKRAWKALRRYYTEGKAFKVSATEECLQCSQREREEKERLEEERRNRDLELSASPALTAL-----LPPLLLRP------PSFLLLLRPLPSPARPRALPPSPSL-------LVDGLAQLPPR 478 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1036.4.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1036.4.4 >prot_C-australica_Contig_1036.4.4 ID=prot_C-australica_Contig_1036.4.4|Name=mRNA_C-australica_Contig_1036.4.4|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=484bp MKLVTAAVDDVQSPSKAKLPADEGAAVAPMSGDTMTAVTTLSPQCTGTGCback to top mRNA from alignment at C-australica_Contig_1036:4089..6922+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1036.4.4 ID=mRNA_C-australica_Contig_1036.4.4|Name=mRNA_C-australica_Contig_1036.4.4|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2834bp|location=Sequence derived from alignment at C-australica_Contig_1036:4089..6922+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1036:4089..6922+ >mRNA_C-australica_Contig_1036.4.4 ID=mRNA_C-australica_Contig_1036.4.4|Name=mRNA_C-australica_Contig_1036.4.4|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1452bp|location=Sequence derived from alignment at C-australica_Contig_1036:4089..6922+ (Chrysoparadoxa australica CS_1217)back to top |