mRNA_C-australica_Contig_10359.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10359.1.1
Unique NamemRNA_C-australica_Contig_10359.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10359.1.1 vs. uniprot
Match: A0A2E2D7I4_9GAMM (Uncharacterized protein n=1 Tax=Methylophaga sp. TaxID=2024840 RepID=A0A2E2D7I4_9GAMM)

HSP 1 Score: 230 bits (587), Expect = 1.140e-68
Identity = 111/225 (49.33%), Postives = 148/225 (65.78%), Query Frame = 1 
Query:   10 RLPVPCPLQPGQSLPGLLSQAVVGNSYTSLGLLAQYFGVTDRPGGLSRVDLRHLAVGAVDTGQLAQFTEHTPEQIQAAALKLGPPCPGGRYDEYVSMHRWRYCPACIQSGKPHQRLWLLPFSTACPEHGCELVDACQDCDRPNAVNVVLMPHCAGCQTFAEARPAQAHEVECAATLNRHLDDEMELKRLLDRLMTAWFLSTSEALRPHYRFSPQLQTVAAMRDLV 684
            RLPVPC L+ G+SLPG LS+A   NSY S+  +A YFG+     GL +  ++ LA G+++   LA FTE   E+I+ AAL +  P PG   D+YVS  RWR+CP C++ G+PHQR W++ F TACPEH C+LVD CQ C    + N +L  +C  CQ  A+   A   E++CA  L+  +DD  +LK +LDRLM AWFL+    LRPHYR SPQL+TV+ MRD+V
Sbjct:    6 RLPVPCSLEEGESLPGFLSRATHINSYGSMFSIASYFGLNTNGKGLDKNQMKLLAKGSLNVSNLASFTESKTEEIRQAALDIRQPIPGTISDDYVSFQRWRFCPLCVREGRPHQRAWMISFVTACPEHRCQLVDDCQACGSEYSTNHMLTRYCVCCQKPAQIVDASEAELKCAEILSNLIDDRQKLKIVLDRLMLAWFLTNPNCLRPHYRVSPQLKTVSEMRDVV 230
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10359.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E2D7I4_9GAMM1.140e-6849.33Uncharacterized protein n=1 Tax=Methylophaga sp. T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10359contigC-australica_Contig_10359:4..687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog258533.BN977_02879
PFAMsHTH_1,TniQ
Model size684
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000141
EggNOG OGsCOG0583@1|root,COG0583@2|Bacteria,2GNFI@201174|Actinobacteria,2363S@1762|Mycobacteriaceae
DescriptionTniQ
Cds size684
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586772.5294228-CDS-C-australica_Contig_10359:3..6871682586772.5294228-CDS-C-australica_Contig_10359:3..687Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10359 4..687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10359.1.1prot_C-australica_Contig_10359.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10359 4..687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10359.1.1

>prot_C-australica_Contig_10359.1.1 ID=prot_C-australica_Contig_10359.1.1|Name=mRNA_C-australica_Contig_10359.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=228bp
MKPRLPVPCPLQPGQSLPGLLSQAVVGNSYTSLGLLAQYFGVTDRPGGLS
RVDLRHLAVGAVDTGQLAQFTEHTPEQIQAAALKLGPPCPGGRYDEYVSM
HRWRYCPACIQSGKPHQRLWLLPFSTACPEHGCELVDACQDCDRPNAVNV
VLMPHCAGCQTFAEARPAQAHEVECAATLNRHLDDEMELKRLLDRLMTAW
FLSTSEALRPHYRFSPQLQTVAAMRDLV
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mRNA from alignment at C-australica_Contig_10359:4..687-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10359.1.1 ID=mRNA_C-australica_Contig_10359.1.1|Name=mRNA_C-australica_Contig_10359.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=684bp|location=Sequence derived from alignment at C-australica_Contig_10359:4..687- (Chrysoparadoxa australica CS_1217)
ATGAAGCCGCGCCTACCGGTTCCGTGTCCATTGCAGCCCGGACAGTCTCT
CCCGGGACTGTTGTCCCAGGCCGTGGTTGGCAACAGCTATACCAGCCTAG
GCTTGCTGGCCCAATACTTCGGCGTGACCGATCGTCCTGGCGGGCTGAGC
AGGGTGGATCTGCGGCATCTGGCCGTGGGCGCGGTCGACACCGGCCAGTT
AGCTCAATTTACCGAGCACACGCCCGAGCAAATCCAAGCCGCCGCGTTGA
AGCTCGGCCCGCCGTGTCCTGGGGGACGATACGACGAGTACGTCAGCATG
CACCGATGGCGCTATTGCCCGGCCTGCATCCAGAGCGGCAAGCCTCATCA
GCGGCTATGGCTGCTGCCATTCTCCACGGCGTGCCCGGAGCACGGCTGCG
AGCTGGTCGACGCCTGCCAGGATTGTGACCGGCCGAATGCTGTCAACGTC
GTTTTGATGCCGCACTGCGCAGGCTGCCAAACATTTGCCGAGGCTAGACC
GGCGCAAGCTCACGAGGTCGAGTGCGCGGCTACGCTGAATCGCCATCTGG
ACGATGAGATGGAGTTGAAGCGCCTGCTGGATCGCCTGATGACGGCCTGG
TTTCTAAGCACGAGCGAAGCGCTCAGGCCACACTACCGTTTCAGCCCTCA
ACTCCAGACTGTAGCGGCCATGCGAGACCTAGTG
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Coding sequence (CDS) from alignment at C-australica_Contig_10359:4..687-

>mRNA_C-australica_Contig_10359.1.1 ID=mRNA_C-australica_Contig_10359.1.1|Name=mRNA_C-australica_Contig_10359.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=684bp|location=Sequence derived from alignment at C-australica_Contig_10359:4..687- (Chrysoparadoxa australica CS_1217)
ATGAAGCCGCGCCTACCGGTTCCGTGTCCATTGCAGCCCGGACAGTCTCT
CCCGGGACTGTTGTCCCAGGCCGTGGTTGGCAACAGCTATACCAGCCTAG
GCTTGCTGGCCCAATACTTCGGCGTGACCGATCGTCCTGGCGGGCTGAGC
AGGGTGGATCTGCGGCATCTGGCCGTGGGCGCGGTCGACACCGGCCAGTT
AGCTCAATTTACCGAGCACACGCCCGAGCAAATCCAAGCCGCCGCGTTGA
AGCTCGGCCCGCCGTGTCCTGGGGGACGATACGACGAGTACGTCAGCATG
CACCGATGGCGCTATTGCCCGGCCTGCATCCAGAGCGGCAAGCCTCATCA
GCGGCTATGGCTGCTGCCATTCTCCACGGCGTGCCCGGAGCACGGCTGCG
AGCTGGTCGACGCCTGCCAGGATTGTGACCGGCCGAATGCTGTCAACGTC
GTTTTGATGCCGCACTGCGCAGGCTGCCAAACATTTGCCGAGGCTAGACC
GGCGCAAGCTCACGAGGTCGAGTGCGCGGCTACGCTGAATCGCCATCTGG
ACGATGAGATGGAGTTGAAGCGCCTGCTGGATCGCCTGATGACGGCCTGG
TTTCTAAGCACGAGCGAAGCGCTCAGGCCACACTACCGTTTCAGCCCTCA
ACTCCAGACTGTAGCGGCCATGCGAGACCTAGTG
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