mRNA_C-australica_Contig_10355.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10355.1.1
Unique NamemRNA_C-australica_Contig_10355.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10355.1.1 vs. uniprot
Match: A0A3D5S7R4_9BACT (TonB-dependent receptor n=2 Tax=Cytophagales TaxID=768507 RepID=A0A3D5S7R4_9BACT)

HSP 1 Score: 420 bits (1080), Expect = 8.240e-140
Identity = 197/267 (73.78%), Postives = 227/267 (85.02%), Query Frame = 1
Query:    1 FSITDKLRGNIGTHYSSFFVENRFYHSLQPRLSFRYLVRNDLSVKASYATMNQYIHLLTNSGIGLPTDLWVPATDQVNPQSSWQVALGIAKTLKGFEASVELYYKEMNNLIEYQEGASFFNLGTDWQDKVTSGDGESYGAELFLQKKTGRLSGWIGYTLSWTYRQFEELNFGERYPYKYDRRHDLSVVGIYEFSRSFSLSSTWVYGTGNAITLPRASYPANNQNDQFYYSNEIRSYGSRNDYRMASYHRLDIGLTWDKEKKWGVRSW 801
            +SI+ K R N G HYS F V +++YHSLQPR+S RYL+ +DLS+KASYATM QYIHLLTNS IGLPTDLWVPATD+V PQ+SWQ A+G AKT+KG+E S+E YYKEMNNLIEYQEGASFFNLGTDWQDKVTSG+G SYGAE  +QKKTG+LSGWIGYTLSWT R F ELNFG+ YPYKYDRRHDLS+VG Y+FS+ FSLSSTWVYGTGNA+TLP+ +YP + +   FYYS +I  YG RND+RMA+YHRLDIGLTW K KK G RSW
Sbjct:  460 YSISSKFRANFGAHYSGFLVNSKYYHSLQPRISLRYLISDDLSIKASYATMAQYIHLLTNSSIGLPTDLWVPATDRVRPQTSWQAAIGAAKTIKGYEFSIEGYYKEMNNLIEYQEGASFFNLGTDWQDKVTSGEGTSYGAEFLIQKKTGKLSGWIGYTLSWTNRTFAELNFGKTYPYKYDRRHDLSIVGTYQFSKKFSLSSTWVYGTGNAMTLPKFTYP-DERTSGFYYS-DITYYGERNDFRMAAYHRLDIGLTWTKPKKNGTRSW 724          
BLAST of mRNA_C-australica_Contig_10355.1.1 vs. uniprot
Match: A0A2E8MVZ0_9RICK (TonB-dependent receptor n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E8MVZ0_9RICK)

HSP 1 Score: 419 bits (1078), Expect = 2.340e-139
Identity = 196/268 (73.13%), Postives = 230/268 (85.82%), Query Frame = 1
Query:    1 FSITDKLRGNIGTHYSSFFVENRFYHSLQPRLSFRYLVRNDLSVKASYATMNQYIHLLTNSGIGLPTDLWVPATDQVNPQSSWQVALGIAKTLKGFEASVELYYKEMNNLIEYQEGASFFNLGTDWQDKVTSGDGESYGAELFLQKKTGRLSGWIGYTLSWTYRQFEELNFGERYPYKYDRRHDLSVVGIYEFSRSFSLSSTWVYGTGNAITLPRASYPA-NNQNDQFYYSNEIRSYGSRNDYRMASYHRLDIGLTWDKEKKWGVRSW 801
            +SI   LR N G HYS F V +R+Y+SLQPR+S RYLV  DLS+KASYA+M QYIHLLTNSGIGLPTDLWVPATD+V PQ+SWQVALG AKT++G+E S+E YYKEMN+LIEY+EGASFFNLGTDWQDKVTSG G SYGAE  +QKKTG+LSGW+GYTLSWT R F ELNFGE YPYKYDRRHDLS+VG+Y+ S +F+LSSTWVYGTGNA+TLP++SYPA + Q+ QFY+ ++I  YG RND+RMA+YHRLDI LTW KEK+ G RSW
Sbjct:  470 YSINTNLRANFGLHYSGFLVNSRYYNSLQPRVSLRYLVSKDLSLKASYASMAQYIHLLTNSGIGLPTDLWVPATDRVKPQTSWQVALGAAKTIEGYEFSIETYYKEMNHLIEYEEGASFFNLGTDWQDKVTSGSGTSYGAEFLIQKKTGKLSGWVGYTLSWTNRTFAELNFGETYPYKYDRRHDLSIVGVYQVSETFALSSTWVYGTGNAMTLPKSSYPAIDGQSGQFYWYDDITYYGKRNDFRMAAYHRLDISLTWTKEKEKGNRSW 737          
BLAST of mRNA_C-australica_Contig_10355.1.1 vs. uniprot
Match: A0A654E7M9_9BACT (TonB-dependent receptor n=2 Tax=Marinoscillum sp. 108 TaxID=2653151 RepID=A0A654E7M9_9BACT)

HSP 1 Score: 403 bits (1035), Expect = 5.910e-133
Identity = 186/267 (69.66%), Postives = 218/267 (81.65%), Query Frame = 1
Query:    1 FSITDKLRGNIGTHYSSFFVENRFYHSLQPRLSFRYLVRNDLSVKASYATMNQYIHLLTNSGIGLPTDLWVPATDQVNPQSSWQVALGIAKTLKGFEASVELYYKEMNNLIEYQEGASFFNLGTDWQDKVTSGDGESYGAELFLQKKTGRLSGWIGYTLSWTYRQFEELNFGERYPYKYDRRHDLSVVGIYEFSRSFSLSSTWVYGTGNAITLPRASYPANNQNDQFYYSNEIRSYGSRNDYRMASYHRLDIGLTWDKEKKWGVRSW 801
            F I+DKLR N G HYSSF V  ++YHSLQPRLS RYL+ NDLS+KAS+ATM QYIHLLTN G+GLPTDLWVPATD+++PQ SWQVALG AKT  GFE S+E+YYKEMNNLIEY+EGAS+FNLG+DWQDKVT G GESYGAE  +QKKTG+LSGW+GYTLSWT R FE LNFG++YPYKYDRRHD+S+V +Y  S++F++SSTWVYGTG A+TLP + Y   N N    Y   I+ Y SRN YRM  YHR+D+GLTW K KK G RSW
Sbjct:  470 FKISDKLRANGGLHYSSFLVNQKYYHSLQPRLSMRYLLGNDLSLKASFATMTQYIHLLTNGGLGLPTDLWVPATDRISPQRSWQVALGAAKTFSGFEGSIEVYYKEMNNLIEYKEGASYFNLGSDWQDKVTVGSGESYGAEFLIQKKTGKLSGWVGYTLSWTNRTFEALNFGKQYPYKYDRRHDVSIVAVYNVSKTFAISSTWVYGTGAALTLPESEYEQENSNG---YGGTIQKYSSRNGYRMRDYHRMDLGLTWTKPKKNGDRSW 733          
BLAST of mRNA_C-australica_Contig_10355.1.1 vs. uniprot
Match: UPI001917A0ED (TonB-dependent receptor n=1 Tax=Marivirga sp. S37H4 TaxID=2802615 RepID=UPI001917A0ED)

HSP 1 Score: 342 bits (877), Expect = 3.530e-109
Identity = 167/277 (60.29%), Postives = 207/277 (74.73%), Query Frame = 1
Query:    1 FSITDKLRGNIGTHYSSFFVENRFYHSLQPRLSFRYLVRNDLSVKASYATMNQYIHLLTNSGIGLPTDLWVPATDQVNPQSSWQVALGIAKTL-KG-FEASVELYYKEMNNLIEYQEGASFFNLGTDWQDKVTSGDGESYGAELFLQKKTGRLSGWIGYTLSWTYRQFEELNFGERYPYKYDRRHDLSVVGIYEFSRSFSLSSTWVYGTGNAITLPRASYPA-----NNQ--NDQFYYS-NEIRSYGSRNDYRMASYHRLDIGLTWDKEKKWGVRSW 801
            F    KL+ N G H S+F+V  ++Y SLQPR+S RYL+  +LSVKASYA M Q++HLLTNSGIGLPTDLWVPATD + PQ S Q A+GI+  L KG +EAS+E YYK M NLIEY+EG++F +L   W+ KVT+G+G SYG+E  L+K  G+ +GWIGYTLSW YRQF+ELNFG+ +PYKYDRRHD+S+V  Y+FS  F +S TWVYGTGNAIT+P A +P      NNQ  +D +YYS +E+  Y  RN YRM SYHR D+GLTW K KKWG  SW
Sbjct:  470 FEPISKLKINAGLHASAFYVNQKWYPSLQPRISTRYLINENLSVKASYAEMAQFLHLLTNSGIGLPTDLWVPATDNIKPQLSQQTAVGISSLLGKGKYEASIEGYYKNMENLIEYKEGSNFLDLSESWESKVTTGNGWSYGSEFLLRKNEGKFNGWIGYTLSWNYRQFDELNFGKAFPYKYDRRHDISIVANYKFSERFEMSGTWVYGTGNAITVPIARFPVLDTNDNNQYEDDYYYYSEDEVYQYSDRNAYRMPSYHRADLGLTWHKPKKWGEASW 746          
BLAST of mRNA_C-australica_Contig_10355.1.1 vs. uniprot
Match: A0A7C5QYV4_9BACT (TonB-dependent receptor n=1 Tax=Flammeovirgaceae bacterium TaxID=2026740 RepID=A0A7C5QYV4_9BACT)

HSP 1 Score: 333 bits (855), Expect = 4.930e-108
Identity = 158/265 (59.62%), Postives = 202/265 (76.23%), Query Frame = 1
Query:    1 FSITDKLRGNIGTHYSSFFVENRFYHSLQPRLSFRYLVRNDLSVKASYATMNQYIHLLTNSGIGLPTDLWVPATDQVNPQSSWQVALGIAKTLKG-FEASVELYYKEMNNLIEYQEGASFFNLGTDWQDKVTSGDGESYGAELFLQKKTGRLSGWIGYTLSWTYRQFEELNFGERYPYKYDRRHDLSVVGIYEFSRSFSLSSTWVYGTGNAITLPRASYPANNQNDQFYYSNEIRSYGSRNDYRMASYHRLDIGLTWDKEKKWGV 792
            F +  +L+ N G H+S F V+N FY SLQPRL+ RYL+   L++K SYATM QYIHLLTNSGIGLPTDLWVP+T ++ PQ+S+QVA G+AKT    +E SVE+YYK M+NLI Y++GASF ++  DWQDKV +G G SYGAE FLQKKTGR +GW+GYTLSWT RQFE +N+G+ +PYKYDRRHD+S+ G+Y  S    L++TWVYGTGNA+TLP  +Y     +  F    +++ YG RN +RM +YHRLDIG+TW K+KK GV
Sbjct:  290 FRVGQRLKINAGLHFSGFDVDNVFYTSLQPRLALRYLLPGGLALKTSYATMAQYIHLLTNSGIGLPTDLWVPSTARIKPQTSYQVAAGVAKTFNNTYEVSVEMYYKGMDNLITYKDGASFASINIDWQDKVEAGSGTSYGAEFFLQKKTGRFTGWLGYTLSWTNRQFENINYGKVFPYKYDRRHDISLTGVYRLSERLRLAATWVYGTGNAVTLPLETYQPLKTSYTFA---DVQYYGGRNAFRMPAYHRLDIGITWIKQKKNGV 551          
BLAST of mRNA_C-australica_Contig_10355.1.1 vs. uniprot
Match: UPI00191D315C (TonB-dependent receptor n=1 Tax=Marivirga atlantica TaxID=1548457 RepID=UPI00191D315C)

HSP 1 Score: 338 bits (867), Expect = 8.590e-108
Identity = 161/271 (59.41%), Postives = 203/271 (74.91%), Query Frame = 1
Query:    1 FSITDKLRGNIGTHYSSFFVENRFYHSLQPRLSFRYLVRNDLSVKASYATMNQYIHLLTNSGIGLPTDLWVPATDQVNPQSSWQVALGIAKTLKG--FEASVELYYKEMNNLIEYQEGASFFNLGTDWQDKVTSGDGESYGAELFLQKKTGRLSGWIGYTLSWTYRQFEELNFGERYPYKYDRRHDLSVVGIYEFSRSFSLSSTWVYGTGNAITLPRASYPANNQN--DQFYYSNEIRSYGSRNDYRMASYHRLDIGLTWDKEKKWGVRSW 801
            +++ DK++ N+G + S+F+V  + Y SLQPRLS RYL    LSVKASYA M+Q++HLLTNSGIGLPTDLWVPATD + PQ S QVA+GI K+L+   +E S E YYK M+NLIEY+EGA+F  +  DW+ KVTSG G +YGAE   +K TG+++GW+GYTLSW  RQF+ELNFG+ YPYKYDRRHDLSVV  ++FS  F +++TWVYGTGNAIT+P A YP  +    D + Y  E+  Y  RN YRM +YHR DIG +W KEKKWG R W
Sbjct:  466 YTLNDKIKLNVGLNASAFYVNKKLYTSLQPRLSARYLFNQSLSVKASYAEMSQFLHLLTNSGIGLPTDLWVPATDNIKPQRSRQVAVGIHKSLQDDKYELSSEAYYKTMDNLIEYREGANFLEVSNDWESKVTSGRGWAYGAEFLARKNTGKVTGWVGYTLSWNNRQFDELNFGKIYPYKYDRRHDLSVVLNFKFSDKFEMNTTWVYGTGNAITIPTAIYPQLSPEGYDNYGYYEEVYQYSDRNAYRMPAYHRADIGFSWHKEKKWGERIW 736          
BLAST of mRNA_C-australica_Contig_10355.1.1 vs. uniprot
Match: A0A5E7ZEG3_9BACT (TonB-dependent receptor n=1 Tax=Imperialibacter sp. EC-SDR9 TaxID=2038371 RepID=A0A5E7ZEG3_9BACT)

HSP 1 Score: 327 bits (838), Expect = 1.650e-103
Identity = 157/275 (57.09%), Postives = 201/275 (73.09%), Query Frame = 1
Query:    1 FSITDKLRGNIGTHYSSFFVENRFYHSLQPRLSFRYLVRNDLSVKASYATMNQYIHLLTNSGIGLPTDLWVPATDQVNPQSSWQVALGIAKTL-KGFEASVELYYKEMNNLIEYQEGASFFNLGTDWQDKVTSGDGESYGAELFLQKKTGRLSGWIGYTLSWTYRQFEELNFGERYPYKYDRRHDLSVVGIYEFSRSFSLSSTWVYGTGNAITLPRASYPANNQN-------DQFYYSNEIRSYGSRNDYRMASYHRLDIGLTWDKEKKWGVRSW 801
            ++I+  +R N G H+S+F V N +Y  +QPR++ RYL  N L++KASYATM Q+IHLLTNS IGLPTDLWVPAT  + PQ S QVA+G+AK + K +E S+E YYK+M NLIEY EGAS+ +   DWQ KV++G+G SYG EL +QKKTGR SGWIGYTLS T R F +LNFG+ YPYKYDRRHD+S+VGIY+    F  S+TWVYGTGNA++LP   Y     +         +YY NE+  Y SRN+YRM +YHRLDI ++  K+KKWG ++W
Sbjct:  465 WTISKAIRVNAGVHFSAFNVNNIWYQKVQPRINARYLFGNGLAIKASYATMAQFIHLLTNSSIGLPTDLWVPATKNIKPQYSSQVAIGVAKNITKTYEVSIEAYYKDMTNLIEYSEGASYIDPQKDWQSKVSTGNGVSYGTELLIQKKTGRFSGWIGYTLSRTERTFPDLNFGKTYPYKYDRRHDVSLVGIYKVRDDFEFSATWVYGTGNAVSLPEERYAGQGHSYSTGPGGQTYYYYNELLDYPSRNNYRMRAYHRLDISVSKTKKKKWGQQTW 739          
BLAST of mRNA_C-australica_Contig_10355.1.1 vs. uniprot
Match: A0A514CJA6_9BACT (TonB-dependent receptor n=1 Tax=Echinicola soli TaxID=2591634 RepID=A0A514CJA6_9BACT)

HSP 1 Score: 326 bits (836), Expect = 3.060e-103
Identity = 149/268 (55.60%), Postives = 196/268 (73.13%), Query Frame = 1
Query:    4 SITDKLRGNIGTHYSSFFVENRFYHSLQPRLSFRYLVRNDLSVKASYATMNQYIHLLTNSGIGLPTDLWVPATDQVNPQSSWQVALGIAKTLKGFEASVELYYKEMNNLIEYQEGASFFNLGTDWQDKVTSGDGESYGAELFLQKKTGRLSGWIGYTLSWTYRQFEELNFGERYPYKYDRRHDLSVVGIYEFSRSFSLSSTWVYGTGNAITLPRASY--PANNQNDQFYYSNEIRSYGSRNDYRMASYHRLDIGLTWDKEKKWGVRSW 801
            ++TDKL+ N+G HYS F  E + + SLQPR++ RYLV    S+KASY  M QYIHLLTN+G+GLPTDLWVPAT  + PQ + QV LGIA++ +GFE S+E YYK M+ LIEY++GA++ N+  +W++KV  G+G SYG EL +QKK G++SGW+GYTLS T RQFEE+NFG+ YPYKYDRRHD+S+   +E+  +   S  WVYGTGNA +LP   Y  P    N+ +YY+NE+  Y SRN++R   YHRLD+  +W K KKWG R W
Sbjct:  469 AVTDKLKANLGAHYSGFMTEGKHFQSLQPRIAARYLVNGSTSIKASYVKMAQYIHLLTNAGLGLPTDLWVPATAAIGPQKATQVGLGIARSYRGFEISLEGYYKTMDGLIEYRDGATYLNVDENWENKVAVGEGRSYGLELLIQKKIGKISGWLGYTLSKTDRQFEEINFGKWYPYKYDRRHDISLALTHEWKDNKDFSLAWVYGTGNAFSLPSLRYEAPDREDNNSWYYNNEVEYYESRNNFRNRDYHRLDLSFSWWKTKKWGERKW 736          
BLAST of mRNA_C-australica_Contig_10355.1.1 vs. uniprot
Match: A0A3M1AMI9_9BACT (TonB-dependent receptor (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1AMI9_9BACT)

HSP 1 Score: 318 bits (814), Expect = 6.440e-103
Identity = 147/265 (55.47%), Postives = 195/265 (73.58%), Query Frame = 1
Query:   19 LRGNIGTHYSSFFVENRFYHSLQPRLSFRYLVRNDLSVKASYATMNQYIHLLTNSGIGLPTDLWVPATDQVNPQSSWQVALGIAKTL-KGFEASVELYYKEMNNLIEYQEGASFFNLGTDWQDKVTSGDGESYGAELFLQKKTGRLSGWIGYTLSWTYRQFEELNFGERYPYKYDRRHDLSVVGIYEFSRSFSLSSTWVYGTGNAITLPRASYPAN---NQNDQFYYSNEIRSYGSRNDYRMASYHRLDIGLTWDKEKKWGVRSW 801
            L+ N+G H S F V  +FYHS+QPR+  RYL+ N+++VKAS+ATM QYI+LLTN  + LPTDLWVP+T+++ PQ SWQ ALGIA TL K +E S+E YYK+M N++ Y+EG SF  L  DWQDKVT GDGESYG E  LQKK GR +GW+GYTLSWT+RQF+++N G+R+P+KYDRRHD+S+V  +E S   ++S TWVYGTGNAITLP   Y      + +   YY+ E+   G +N +RM  YHRLD+ + + K+K+   R+W
Sbjct:  205 LKANLGMHASGFSVNGKFYHSIQPRIGLRYLLNNNIAVKASFATMTQYINLLTNESLSLPTDLWVPSTERIKPQQSWQPALGIATTLWKEYELSLEGYYKKMKNVVSYKEGVSFLGLENDWQDKVTQGDGESYGMEFLLQKKEGRTTGWLGYTLSWTWRQFDDINGGKRFPFKYDRRHDISLVVSHELSDRITVSGTWVYGTGNAITLPLYRYDTPVFYDPDSDAYYTRELEGVGEKNSFRMKPYHRLDLSIAFRKQKRKYERTW 469          
BLAST of mRNA_C-australica_Contig_10355.1.1 vs. uniprot
Match: A0A401UFD3_9BACT (TonB-dependent receptor n=2 Tax=Chryseotalea sanaruensis TaxID=2482724 RepID=A0A401UFD3_9BACT)

HSP 1 Score: 326 bits (836), Expect = 1.120e-102
Identity = 158/268 (58.96%), Postives = 195/268 (72.76%), Query Frame = 1
Query:    1 FSITDKLRGNIGTHYSSFFVENRFYHSLQPRLSFRYLVRNDLSVKASYATMNQYIHLLTNSGIGLPTDLWVPATDQVNPQSSWQVALGIAKTLKG-FEASVELYYKEMNNLIEYQEGASFFNLGTDWQDKVTSGDGESYGAELFLQKKTGRLSGWIGYTLSWTYRQFEELNFGERYPYKYDRRHDLSVVGIYEFSRSFSLSSTWVYGTGNAITLPRASYPANNQNDQFYYSNEIRSYGSRNDYRMASYHRLDIGLTWDKEKKWGVRSW 801
            FS+ ++L+ N+G HYS+F VE + Y S+QPR S RYL+ +  S+KASYATM Q+IHLLTNSG+GLPTDLWVPAT  + PQ+SWQVALG A  L   FE SVE YYKEM N+IEY+EGA+F     DW+ KV  G G+SYG ELFLQKK GRL+GWIGYTL+W+ R+FE +N G  YP++YD RHDLS+VG Y  +  F L S ++Y TG A+TLP ASY     ND      E+  YG RNDYRM +YHR+D+  TW K KKWG R+W
Sbjct:  537 FSVGNRLKSNLGIHYSNFIVEGKTYASVQPRFSSRYLISSKFSLKASYATMAQFIHLLTNSGVGLPTDLWVPATPNIKPQTSWQVALGGAYELNNDFEFSVEAYYKEMENVIEYKEGANFLEPVKDWETKVEVGKGDSYGTELFLQKKQGRLNGWIGYTLAWSNREFENINNGNPYPFRYDVRHDLSIVGTYALNDHFELGSVFIYRTGTAVTLPIASY----LNDGV----EVDYYGGRNDYRMPAYHRIDLSATWKKTKKWGERAW 796          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10355.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5S7R4_9BACT8.240e-14073.78TonB-dependent receptor n=2 Tax=Cytophagales TaxID... [more]
A0A2E8MVZ0_9RICK2.340e-13973.13TonB-dependent receptor n=1 Tax=Rickettsiales bact... [more]
A0A654E7M9_9BACT5.910e-13369.66TonB-dependent receptor n=2 Tax=Marinoscillum sp. ... [more]
UPI001917A0ED3.530e-10960.29TonB-dependent receptor n=1 Tax=Marivirga sp. S37H... [more]
A0A7C5QYV4_9BACT4.930e-10859.62TonB-dependent receptor n=1 Tax=Flammeovirgaceae b... [more]
UPI00191D315C8.590e-10859.41TonB-dependent receptor n=1 Tax=Marivirga atlantic... [more]
A0A5E7ZEG3_9BACT1.650e-10357.09TonB-dependent receptor n=1 Tax=Imperialibacter sp... [more]
A0A514CJA6_9BACT3.060e-10355.60TonB-dependent receptor n=1 Tax=Echinicola soli Ta... [more]
A0A3M1AMI9_9BACT6.440e-10355.47TonB-dependent receptor (Fragment) n=1 Tax=Bactero... [more]
A0A401UFD3_9BACT1.120e-10258.96TonB-dependent receptor n=2 Tax=Chryseotalea sanar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10355contigC-australica_Contig_10355:3..806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog880070.Cycma_3561
PFAMsCarbopepD_reg_2,Plug,TonB_dep_Rec
Model size804
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.6e-100
EggNOG OGsCOG1629@1|root,COG4771@2|Bacteria,4NF4B@976|Bacteroidetes,47MDX@768503|Cytophagia
DescriptionPFAM TonB-dependent Receptor Plug
Cds size804
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586772.5006483-CDS-C-australica_Contig_10355:2..8061682586772.5006483-CDS-C-australica_Contig_10355:2..806Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10355 3..806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10355.1.1prot_C-australica_Contig_10355.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10355 3..806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10355.1.1

>prot_C-australica_Contig_10355.1.1 ID=prot_C-australica_Contig_10355.1.1|Name=mRNA_C-australica_Contig_10355.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=268bp
FSITDKLRGNIGTHYSSFFVENRFYHSLQPRLSFRYLVRNDLSVKASYAT
MNQYIHLLTNSGIGLPTDLWVPATDQVNPQSSWQVALGIAKTLKGFEASV
ELYYKEMNNLIEYQEGASFFNLGTDWQDKVTSGDGESYGAELFLQKKTGR
LSGWIGYTLSWTYRQFEELNFGERYPYKYDRRHDLSVVGIYEFSRSFSLS
STWVYGTGNAITLPRASYPANNQNDQFYYSNEIRSYGSRNDYRMASYHRL
DIGLTWDKEKKWGVRSW*
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mRNA from alignment at C-australica_Contig_10355:3..806+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10355.1.1 ID=mRNA_C-australica_Contig_10355.1.1|Name=mRNA_C-australica_Contig_10355.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=804bp|location=Sequence derived from alignment at C-australica_Contig_10355:3..806+ (Chrysoparadoxa australica CS_1217)
TTTTCAATAACAGACAAACTAAGGGGGAATATAGGCACACATTATTCCTC CTTCTTTGTTGAAAATAGGTTCTATCATTCGCTCCAGCCAAGATTATCTT TCAGGTACTTGGTTCGCAATGACCTTTCTGTAAAAGCTTCATATGCCACT ATGAATCAATACATACACCTCTTGACCAATAGTGGTATTGGACTCCCAAC AGACTTATGGGTCCCCGCAACAGATCAGGTGAACCCACAATCTAGCTGGC AGGTAGCACTAGGTATTGCAAAAACACTTAAAGGGTTTGAAGCAAGTGTA GAACTTTATTACAAGGAAATGAATAACCTGATTGAATACCAGGAAGGTGC TTCCTTTTTTAATTTGGGTACCGATTGGCAAGATAAAGTCACTTCCGGTG ATGGAGAAAGCTATGGAGCTGAACTTTTCCTTCAGAAAAAAACAGGTCGA CTTTCGGGTTGGATCGGATATACACTTTCATGGACCTATCGACAATTTGA AGAACTCAATTTTGGTGAAAGATATCCCTATAAGTATGACCGGAGGCATG ATTTAAGTGTGGTAGGTATTTATGAGTTCTCAAGAAGTTTCTCATTATCA AGTACTTGGGTATATGGTACAGGGAATGCCATCACATTACCCAGGGCTTC CTATCCTGCAAATAATCAGAATGACCAATTCTATTATAGCAATGAAATCA GGAGCTATGGCAGTAGAAATGATTACCGGATGGCTTCCTATCATCGGCTT GACATTGGCTTAACCTGGGATAAAGAAAAAAAATGGGGGGTACGGTCCTG GTGA
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Coding sequence (CDS) from alignment at C-australica_Contig_10355:3..806+

>mRNA_C-australica_Contig_10355.1.1 ID=mRNA_C-australica_Contig_10355.1.1|Name=mRNA_C-australica_Contig_10355.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=804bp|location=Sequence derived from alignment at C-australica_Contig_10355:3..806+ (Chrysoparadoxa australica CS_1217)
TTTTCAATAACAGACAAACTAAGGGGGAATATAGGCACACATTATTCCTC
CTTCTTTGTTGAAAATAGGTTCTATCATTCGCTCCAGCCAAGATTATCTT
TCAGGTACTTGGTTCGCAATGACCTTTCTGTAAAAGCTTCATATGCCACT
ATGAATCAATACATACACCTCTTGACCAATAGTGGTATTGGACTCCCAAC
AGACTTATGGGTCCCCGCAACAGATCAGGTGAACCCACAATCTAGCTGGC
AGGTAGCACTAGGTATTGCAAAAACACTTAAAGGGTTTGAAGCAAGTGTA
GAACTTTATTACAAGGAAATGAATAACCTGATTGAATACCAGGAAGGTGC
TTCCTTTTTTAATTTGGGTACCGATTGGCAAGATAAAGTCACTTCCGGTG
ATGGAGAAAGCTATGGAGCTGAACTTTTCCTTCAGAAAAAAACAGGTCGA
CTTTCGGGTTGGATCGGATATACACTTTCATGGACCTATCGACAATTTGA
AGAACTCAATTTTGGTGAAAGATATCCCTATAAGTATGACCGGAGGCATG
ATTTAAGTGTGGTAGGTATTTATGAGTTCTCAAGAAGTTTCTCATTATCA
AGTACTTGGGTATATGGTACAGGGAATGCCATCACATTACCCAGGGCTTC
CTATCCTGCAAATAATCAGAATGACCAATTCTATTATAGCAATGAAATCA
GGAGCTATGGCAGTAGAAATGATTACCGGATGGCTTCCTATCATCGGCTT
GACATTGGCTTAACCTGGGATAAAGAAAAAAAATGGGGGGTACGGTCCTG
GTGA
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