mRNA_C-australica_Contig_10353.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10353.1.1
Unique NamemRNA_C-australica_Contig_10353.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10353.1.1 vs. uniprot
Match: A0A2E9HUI3_9RHOB (Uncharacterized protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A2E9HUI3_9RHOB)

HSP 1 Score: 253 bits (645), Expect = 4.240e-85
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 
Query:    1 MIDRMKQMQADLDHLPHLHRMGALFSETVLIKVDGQEFYLVFEKGRIAQLLEGPSKKTPYRFSFITDGAAFEEFWTATPKPGFHDIFAMVKIGRAEIMGDMLLLVKNLRFLKEVLALPRARREVVE 378
            MIDRMKQMQADLDHLPHLHRMGALFSETVLIKVDGQEFYLVFEKGRIAQLLEGPSKKTPYRFSFITDGAAFEEFWTATPKPGFHDIFAMVKIGRAEIMGDMLLLVKNLRFLKEVLALPRARREVVE
Sbjct:    1 MIDRMKQMQADLDHLPHLHRMGALFSETVLIKVDGQEFYLVFEKGRIAQLLEGPSKKTPYRFSFITDGAAFEEFWTATPKPGFHDIFAMVKIGRAEIMGDMLLLVKNLRFLKEVLALPRARREVVE 126
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BLAST of mRNA_C-australica_Contig_10353.1.1 vs. uniprot
Match: A0A2T8HPX3_9RHOB (Uncharacterized protein n=1 Tax=Pararhodobacter oceanensis TaxID=2172121 RepID=A0A2T8HPX3_9RHOB)

HSP 1 Score: 233 bits (594), Expect = 2.550e-77
Identity = 113/126 (89.68%), Postives = 121/126 (96.03%), Query Frame = 1 
Query:    1 MIDRMKQMQADLDHLPHLHRMGALFSETVLIKVDGQEFYLVFEKGRIAQLLEGPSKKTPYRFSFITDGAAFEEFWTATPKPGFHDIFAMVKIGRAEIMGDMLLLVKNLRFLKEVLALPRARREVVE 378
            MIDRMK+MQADL+HLPHLHRMGALFSETVL+KVDGQEFYLVF+KGRIAQLLEGPSKKTPYRF  ITDGAA  EFWTATPKPGFHDIFAMV+IGRAEI+GDMLLLVKNLRFLKEVLALPRAR EV++
Sbjct:    1 MIDRMKRMQADLEHLPHLHRMGALFSETVLVKVDGQEFYLVFDKGRIAQLLEGPSKKTPYRFGLITDGAALTEFWTATPKPGFHDIFAMVRIGRAEIIGDMLLLVKNLRFLKEVLALPRARHEVIK 126
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BLAST of mRNA_C-australica_Contig_10353.1.1 vs. uniprot
Match: A3U0R9_PSEBH (Uncharacterized protein n=1 Tax=Pseudooceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / KCTC 12145 / HTCC2597) TaxID=252305 RepID=A3U0R9_PSEBH)

HSP 1 Score: 212 bits (539), Expect = 6.210e-69
Identity = 103/126 (81.75%), Postives = 115/126 (91.27%), Query Frame = 1 
Query:    1 MIDRMKQMQADLDHLPHLHRMGALFSETVLIKVDGQEFYLVFEKGRIAQLLEGPSKKTPYRFSFITDGAAFEEFWTATPKPGFHDIFAMVKIGRAEIMGDMLLLVKNLRFLKEVLALPRARREVVE 378
            M++RM+++QA LD  PHLHR+GALFSETVLIKVDG EFYLVF+KGRI +++EGPSKKTPYRF FITDGAA EEFWTATP PG HDIFAMVKIGRAEI+GDMLLLV+NLRF KEVLALPRARRE VE
Sbjct:    1 MMERMRRIQAMLDAAPHLHRLGALFSETVLIKVDGDEFYLVFDKGRIDRVVEGPSKKTPYRFGFITDGAALEEFWTATPAPGLHDIFAMVKIGRAEIVGDMLLLVRNLRFFKEVLALPRARREAVE 126
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BLAST of mRNA_C-australica_Contig_10353.1.1 vs. uniprot
Match: A0A165PIH8_9RHOB (Uncharacterized protein n=1 Tax=Sulfitobacter sp. HI0054 TaxID=1822238 RepID=A0A165PIH8_9RHOB)

HSP 1 Score: 199 bits (506), Expect = 7.340e-64
Identity = 96/126 (76.19%), Postives = 108/126 (85.71%), Query Frame = 1 
Query:    1 MIDRMKQMQADLDHLPHLHRMGALFSETVLIKVDGQEFYLVFEKGRIAQLLEGPSKKTPYRFSFITDGAAFEEFWTATPKPGFHDIFAMVKIGRAEIMGDMLLLVKNLRFLKEVLALPRARREVVE 378
            MID M+Q++  LD  PHLHR+GALFSETVLIK+DG E+YLVF+KGRI +++EGPSKKTPYRF F+TDG A  EFW ATPKPGFHDIFAMVKIGRAEI+GDMLLLVKNLRF KEVLALPR  R   E
Sbjct:    1 MIDTMRQIETRLDGAPHLHRLGALFSETVLIKIDGLEYYLVFDKGRIDRVVEGPSKKTPYRFGFVTDGEALREFWRATPKPGFHDIFAMVKIGRAEIVGDMLLLVKNLRFFKEVLALPRDARTTQE 126
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BLAST of mRNA_C-australica_Contig_10353.1.1 vs. uniprot
Match: A0A7W6DQN5_9RHOB (Uncharacterized protein n=1 Tax=Sagittula marina TaxID=943940 RepID=A0A7W6DQN5_9RHOB)

HSP 1 Score: 188 bits (477), Expect = 1.640e-59
Identity = 91/119 (76.47%), Postives = 102/119 (85.71%), Query Frame = 1 
Query:    1 MIDRMKQMQADLDHLPHLHRMGALFSETVLIKVDGQEFYLVFEKGRIAQLLEGPSKKTPYRFSFITDGAAFEEFWTATPKPGFHDIFAMVKIGRAEIMGDMLLLVKNLRFLKEVLALPR 357
            M D +K++QA LD  PHLHR+GALFSETVL+KVDGQEFYLVFEKGRI +++EGPSKKTPYRF F+TD  A   FW + P PGFHDIFAMVKIGRAEI+GDMLLLVKNLRF KEVLAL R
Sbjct:    1 MHDTLKEIQAGLDRSPHLHRIGALFSETVLLKVDGQEFYLVFEKGRIDRIVEGPSKKTPYRFGFVTDAEALRAFWQSLPAPGFHDIFAMVKIGRAEIVGDMLLLVKNLRFFKEVLALGR 119
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BLAST of mRNA_C-australica_Contig_10353.1.1 vs. uniprot
Match: A3K7C9_9RHOB (Uncharacterized protein n=2 Tax=Sagittula TaxID=58842 RepID=A3K7C9_9RHOB)

HSP 1 Score: 179 bits (455), Expect = 3.690e-56
Identity = 86/119 (72.27%), Postives = 102/119 (85.71%), Query Frame = 1 
Query:    1 MIDRMKQMQADLDHLPHLHRMGALFSETVLIKVDGQEFYLVFEKGRIAQLLEGPSKKTPYRFSFITDGAAFEEFWTATPKPGFHDIFAMVKIGRAEIMGDMLLLVKNLRFLKEVLALPR 357
            M + + +++A+L+  PHLHR+GALFSETVL+KV+GQE+YLVFEKGRI +++EGPSKKTPYRF F+TD  A   FWTA P PGFHDIFAMVKIGRAEI+GDML LVKNLRF KEVLAL R
Sbjct:    1 MHETLARIRAELERSPHLHRLGALFSETVLLKVNGQEYYLVFEKGRIDRIVEGPSKKTPYRFGFLTDTEALSAFWTARPAPGFHDIFAMVKIGRAEIVGDMLCLVKNLRFFKEVLALGR 119
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BLAST of mRNA_C-australica_Contig_10353.1.1 vs. uniprot
Match: UPI001109EDF4 (hypothetical protein n=1 Tax=Poseidonocella sp. HB161398 TaxID=2320855 RepID=UPI001109EDF4)

HSP 1 Score: 173 bits (438), Expect = 1.580e-53
Identity = 81/122 (66.39%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:    1 MIDRMKQMQADLDHLPHLHRMGALFSETVLIKVDGQEFYLVFEKGRIAQLLEGPSKKTPYRFSFITDGAAFEEFWTATPKPGFHDIFAMVKIGRAEIMGDMLLLVKNLRFLKEVLALPRARR 366
            M+++ +++QA L+  PHLHR+GALFSETVL++VDG+E YLVFEKG +  +  GPSKKTP+RF+ +TD AA E FW   P  GFHDIFA+VKIGRA I+GDML LVKNLRF+KEVLALPRA R
Sbjct:    1 MLEKFREIQAALETRPHLHRIGALFSETVLVEVDGEEIYLVFEKGHLVSVTPGPSKKTPWRFALVTDRAALEAFWQPVPAAGFHDIFALVKIGRARILGDMLALVKNLRFIKEVLALPRAAR 122
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BLAST of mRNA_C-australica_Contig_10353.1.1 vs. uniprot
Match: UPI000E28457E (hypothetical protein n=1 Tax=Tropicimonas sp. IMCC34043 TaxID=2248760 RepID=UPI000E28457E)

HSP 1 Score: 167 bits (424), Expect = 2.140e-51
Identity = 76/119 (63.87%), Postives = 96/119 (80.67%), Query Frame = 1 
Query:    1 MIDRMKQMQADLDHLPHLHRMGALFSETVLIKVDGQEFYLVFEKGRIAQLLEGPSKKTPYRFSFITDGAAFEEFWTATPKPGFHDIFAMVKIGRAEIMGDMLLLVKNLRFLKEVLALPR 357
            M +R++ MQA L+  PHL R+G LFSETVL+ VDG E+YL F+KGR+ Q++ GPS+KTPYRF  ITD AA +EFW   P+PGFHDIF +VK+GRA+I GD+L+LVKNLRF KE +ALPR
Sbjct:    1 MFERLQGMQARLNETPHLQRLGRLFSETVLLSVDGDEYYLSFDKGRLVQVMPGPSRKTPYRFGLITDAAALDEFWQPLPRPGFHDIFGLVKLGRAQISGDILVLVKNLRFFKEFMALPR 119
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BLAST of mRNA_C-australica_Contig_10353.1.1 vs. uniprot
Match: UPI001557B7C7 (hypothetical protein n=1 Tax=Mangrovicoccus sp. HB161399 TaxID=2720392 RepID=UPI001557B7C7)

HSP 1 Score: 164 bits (416), Expect = 3.540e-50
Identity = 77/120 (64.17%), Postives = 95/120 (79.17%), Query Frame = 1 
Query:    1 MIDRMKQMQADLDHLPHLHRMGALFSETVLIKVDGQEFYLVFEKGRIAQLLEGPSKKTPYRFSFITDGAAFEEFWTATPKPGFHDIFAMVKIGRAEIMGDMLLLVKNLRFLKEVLALPRA 360
            M++R ++M   ++  PHL R+GALFSETVL++VDG E+YL FEKG +  + EGPSKKTP+RF+  TD AA E FW   P PGFHDIFA+ KIGR +I+GDML LVKNLRF+KEVLALPRA
Sbjct:    1 MLERFEEMAEAIEARPHLLRLGALFSETVLVEVDGSEYYLAFEKGHLVSVTEGPSKKTPWRFALATDAAALETFWQPVPPPGFHDIFAIAKIGRLKILGDMLALVKNLRFVKEVLALPRA 120
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BLAST of mRNA_C-australica_Contig_10353.1.1 vs. uniprot
Match: A0A2I7KG94_9RHOB (Uncharacterized protein n=1 Tax=Phaeobacter inhibens TaxID=221822 RepID=A0A2I7KG94_9RHOB)

HSP 1 Score: 162 bits (410), Expect = 2.550e-49
Identity = 76/121 (62.81%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:    1 MIDRMKQMQADLDHLPHLHRMGALFSETVLIKVDGQEFYLVFEKGRIAQLLEGPSKKTPYRFSFITDGAAFEEFWTATPKPGFHDIFAMVKIGRAEIMGDMLLLVKNLRFLKEVLALPRAR 363
            MIDR+KQMQ  LD  PH+ RMG LFSETVL+++DG EFYL FEKG++A + +GPSKKTPYRF++ T+  A  +FW   P+ GFHD+FAM KIG+AEI GD+L+LVKNLRF KE +AL R +
Sbjct:    1 MIDRLKQMQTRLDATPHMVRMGRLFSETVLLEIDGDEFYLTFEKGQLAAITQGPSKKTPYRFAYKTNADALHKFWQWRPEAGFHDLFAMAKIGQAEIAGDILILVKNLRFFKEFMALGRTQ 121
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10353.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E9HUI3_9RHOB4.240e-85100.00Uncharacterized protein n=2 Tax=Rhodobacterales Ta... [more]
A0A2T8HPX3_9RHOB2.550e-7789.68Uncharacterized protein n=1 Tax=Pararhodobacter oc... [more]
A3U0R9_PSEBH6.210e-6981.75Uncharacterized protein n=1 Tax=Pseudooceanicola b... [more]
A0A165PIH8_9RHOB7.340e-6476.19Uncharacterized protein n=1 Tax=Sulfitobacter sp. ... [more]
A0A7W6DQN5_9RHOB1.640e-5976.47Uncharacterized protein n=1 Tax=Sagittula marina T... [more]
A3K7C9_9RHOB3.690e-5672.27Uncharacterized protein n=2 Tax=Sagittula TaxID=58... [more]
UPI001109EDF41.580e-5366.39hypothetical protein n=1 Tax=Poseidonocella sp. HB... [more]
UPI000E28457E2.140e-5163.87hypothetical protein n=1 Tax=Tropicimonas sp. IMCC... [more]
UPI001557B7C73.540e-5064.17hypothetical protein n=1 Tax=Mangrovicoccus sp. HB... [more]
A0A2I7KG94_9RHOB2.550e-4962.81Uncharacterized protein n=1 Tax=Phaeobacter inhibe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10353contigC-australica_Contig_10353:368..748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog388399.SSE37_00415
Model size381
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.05e-57
EggNOG OGsCOG3255@1|root,COG3255@2|Bacteria,1RM64@1224|Proteobacteria,2U7YK@28211|Alphaproteobacteria
DescriptionSterol carrier protein
Cds size381
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586772.4728138-CDS-C-australica_Contig_10353:367..7481682586772.4728138-CDS-C-australica_Contig_10353:367..748Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10353 368..748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10353.1.1prot_C-australica_Contig_10353.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10353 368..748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10353.1.1

>prot_C-australica_Contig_10353.1.1 ID=prot_C-australica_Contig_10353.1.1|Name=mRNA_C-australica_Contig_10353.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=127bp
MIDRMKQMQADLDHLPHLHRMGALFSETVLIKVDGQEFYLVFEKGRIAQL
LEGPSKKTPYRFSFITDGAAFEEFWTATPKPGFHDIFAMVKIGRAEIMGD
MLLLVKNLRFLKEVLALPRARREVVE*
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mRNA from alignment at C-australica_Contig_10353:368..748+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10353.1.1 ID=mRNA_C-australica_Contig_10353.1.1|Name=mRNA_C-australica_Contig_10353.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=381bp|location=Sequence derived from alignment at C-australica_Contig_10353:368..748+ (Chrysoparadoxa australica CS_1217)
ATGATAGACCGAATGAAGCAAATGCAGGCGGATCTGGATCATCTGCCGCA
TTTGCACCGAATGGGAGCGTTGTTTTCGGAGACGGTGTTGATCAAAGTGG
ACGGGCAGGAATTCTACCTCGTTTTCGAGAAGGGCCGGATTGCGCAGCTG
CTGGAGGGACCGTCGAAAAAGACGCCCTATCGCTTCAGCTTTATCACCGA
TGGGGCCGCCTTCGAGGAATTCTGGACCGCGACACCTAAGCCGGGATTTC
ATGACATCTTTGCGATGGTCAAGATCGGGCGGGCTGAAATCATGGGCGAC
ATGCTGTTGCTGGTCAAAAACTTGAGATTTCTCAAAGAAGTGCTGGCACT
GCCGCGCGCGCGCCGGGAGGTGGTGGAATGA
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Coding sequence (CDS) from alignment at C-australica_Contig_10353:368..748+

>mRNA_C-australica_Contig_10353.1.1 ID=mRNA_C-australica_Contig_10353.1.1|Name=mRNA_C-australica_Contig_10353.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=381bp|location=Sequence derived from alignment at C-australica_Contig_10353:368..748+ (Chrysoparadoxa australica CS_1217)
ATGATAGACCGAATGAAGCAAATGCAGGCGGATCTGGATCATCTGCCGCA
TTTGCACCGAATGGGAGCGTTGTTTTCGGAGACGGTGTTGATCAAAGTGG
ACGGGCAGGAATTCTACCTCGTTTTCGAGAAGGGCCGGATTGCGCAGCTG
CTGGAGGGACCGTCGAAAAAGACGCCCTATCGCTTCAGCTTTATCACCGA
TGGGGCCGCCTTCGAGGAATTCTGGACCGCGACACCTAAGCCGGGATTTC
ATGACATCTTTGCGATGGTCAAGATCGGGCGGGCTGAAATCATGGGCGAC
ATGCTGTTGCTGGTCAAAAACTTGAGATTTCTCAAAGAAGTGCTGGCACT
GCCGCGCGCGCGCCGGGAGGTGGTGGAATGA
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