mRNA_C-australica_Contig_10343.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10343.1.1 vs. uniprot
Match: UPI0003B4857B (TonB-dependent receptor n=1 Tax=Oceanicaulis alexandrii TaxID=153233 RepID=UPI0003B4857B) HSP 1 Score: 484 bits (1246), Expect = 4.970e-166 Identity = 239/247 (96.76%), Postives = 246/247 (99.60%), Query Frame = 1 Query: 1 GSGSIFSRPSDAWFLAATLSRTERAPTDAEVFSDGPHAATRAYERGDLNLDTEVAWSGEVTARYAQGRISAETNLFLADYDGFIGLFPTGEEEDGFDVFEYRQADAQLYGFEAQVNAELGEVRGWALSGEASLDYVRGELDDGGNLPRIPPLSSNLALIAERGMWSVRGEAHLVAEQDETTSFETETEGYAMFNADLEVTPFVERDVRVILGVRNLTDEEGRVHSSFLKDMVPLPGRSFRIAVRAGF 741 GSGSIF+RP+DAWFLAATLSRTERAPTDAEVF+DGPHAATRAYERGDL+LDTEVAWSGEVTARYAQGRISAETNLF ADYDGFIGLFPTGEEEDGFDVFEYRQA+A+LYGFEAQVNAELGEVRGWALSGEASLDYVRGELDDGGNLPRIPPLSSNLALIAERG+WSVRGEAHLVAEQDETTSFETETEGYAMFNADLEVTPFVERDVRVILGVRNLTDEEGRVHSSFLKDMVPLPGRSFRIAVRAGF Sbjct: 456 GSGSIFTRPADAWFLAATLSRTERAPTDAEVFADGPHAATRAYERGDLDLDTEVAWSGEVTARYAQGRISAETNLFFADYDGFIGLFPTGEEEDGFDVFEYRQANAELYGFEAQVNAELGEVRGWALSGEASLDYVRGELDDGGNLPRIPPLSSNLALIAERGVWSVRGEAHLVAEQDETTSFETETEGYAMFNADLEVTPFVERDVRVILGVRNLTDEEGRVHSSFLKDMVPLPGRSFRIAVRAGF 702
BLAST of mRNA_C-australica_Contig_10343.1.1 vs. uniprot
Match: A3UG17_9PROT (TonB-dependent receptor n=2 Tax=unclassified Oceanicaulis TaxID=2632123 RepID=A3UG17_9PROT) HSP 1 Score: 426 bits (1095), Expect = 3.630e-143 Identity = 205/247 (83.00%), Postives = 226/247 (91.50%), Query Frame = 1 Query: 1 GSGSIFSRPSDAWFLAATLSRTERAPTDAEVFSDGPHAATRAYERGDLNLDTEVAWSGEVTARYAQGRISAETNLFLADYDGFIGLFPTGEEEDGFDVFEYRQADAQLYGFEAQVNAELGEVRGWALSGEASLDYVRGELDDGGNLPRIPPLSSNLALIAERGMWSVRGEAHLVAEQDETTSFETETEGYAMFNADLEVTPFVERDVRVILGVRNLTDEEGRVHSSFLKDMVPLPGRSFRIAVRAGF 741 GSGS+F RP + WFLAATLSRTERAPTDAEVF+DGPHAATRAYERG L+LDTEVAWSGE+TARY+ R+SAE N+F ADYDGFIGLFPTGEEE+GFDVFEYRQAD LYGFEAQ+ A LG VRGWA SGEASLDYVRG +DDGG+LPRIPPLSSN+ALIAERG+WSVRGEAHLVA+QDET +FETET+GYAMFNADLEVTPF +RDVRVILGVRN+TDEEGRVH+SFLKD VPLPGR+ RIAVR F Sbjct: 462 GSGSVFVRPREDWFLAATLSRTERAPTDAEVFADGPHAATRAYERGSLDLDTEVAWSGELTARYSGARVSAEGNVFYADYDGFIGLFPTGEEEEGFDVFEYRQADTALYGFEAQLTAALGAVRGWAFSGEASLDYVRGTVDDGGDLPRIPPLSSNIALIAERGVWSVRGEAHLVADQDETAAFETETDGYAMFNADLEVTPFADRDVRVILGVRNITDEEGRVHTSFLKDQVPLPGRNVRIAVRTSF 708
BLAST of mRNA_C-australica_Contig_10343.1.1 vs. uniprot
Match: A0A4S2H8L4_9PROT (TonB-dependent receptor n=1 Tax=Marinicauda pacifica TaxID=1133559 RepID=A0A4S2H8L4_9PROT) HSP 1 Score: 337 bits (864), Expect = 1.520e-108 Identity = 167/247 (67.61%), Postives = 190/247 (76.92%), Query Frame = 1 Query: 1 GSGSIFSRPSDAWFLAATLSRTERAPTDAEVFSDGPHAATRAYERGDLNLDTEVAWSGEVTARYAQGRISAETNLFLADYDGFIGLFPTGEEEDGFDVFEYRQADAQLYGFEAQVNAELGEVRGWALSGEASLDYVRGELDDGGNLPRIPPLSSNLALIAERGMWSVRGEAHLVAEQDETTSFETETEGYAMFNADLEVTPFVERDVRVILGVRNLTDEEGRVHSSFLKDMVPLPGRSFRIAVRAGF 741 GS S+F+RP+D WF TLS TERAPTDAEVFS+G H ATRA+E G+L+L TE AWSGE T R GR SAE F ADYDGFIGLFPTGEEEDG DVFEYRQ DA LYGFEA+ ELG V + LS EA+ DYVRGELD+GG+LPRIPPLS LALIA+ + S+R E VAEQDE SFET TEG+A+FNAD +TPF E DV I+GVRN+TDEE R+H+SFLKD VPLPGRS+R AV F Sbjct: 458 GSVSLFARPADGWFTGITLSHTERAPTDAEVFSNGAHVATRAFEVGNLDLGTETAWSGEATLRREAGRFSAEATAFYADYDGFIGLFPTGEEEDGLDVFEYRQEDAALYGFEAKFETELGRVAMFDLSAEATADYVRGELDNGGDLPRIPPLSGTLALIADHRLVSLRAEGRFVAEQDEVASFETSTEGFALFNADARITPFDEHDVAFIVGVRNITDEEARLHTSFLKDQVPLPGRSYRAAVSVRF 704
BLAST of mRNA_C-australica_Contig_10343.1.1 vs. uniprot
Match: A0A4S2H2X6_9PROT (TonB-dependent receptor n=1 Tax=Marinicauda algicola TaxID=2029849 RepID=A0A4S2H2X6_9PROT) HSP 1 Score: 334 bits (857), Expect = 1.690e-107 Identity = 163/247 (65.99%), Postives = 190/247 (76.92%), Query Frame = 1 Query: 1 GSGSIFSRPSDAWFLAATLSRTERAPTDAEVFSDGPHAATRAYERGDLNLDTEVAWSGEVTARYAQGRISAETNLFLADYDGFIGLFPTGEEEDGFDVFEYRQADAQLYGFEAQVNAELGEVRGWALSGEASLDYVRGELDDGGNLPRIPPLSSNLALIAERGMWSVRGEAHLVAEQDETTSFETETEGYAMFNADLEVTPFVERDVRVILGVRNLTDEEGRVHSSFLKDMVPLPGRSFRIAVRAGF 741 GS S+F+RP + WF TLSRTERAPTDAEVF++GPH ATRA+E G+L+L TE AWSGE T R R E F A YDGFIGLFPTGEEEDG DVFEYRQ DA LYGFEA+ +A LGE G+ S EAS DYVRGELDDGGNLPRIPPLS LALIA+RG S+R E VAEQDE TSFE T+ +A+FNAD +TPF ++D+ +++GVRN+TDEE R+H+SFLKD VPLPGRS R A+ A F Sbjct: 458 GSLSLFARPGEGWFTGFTLSRTERAPTDAEVFANGPHIATRAFEVGNLDLGTETAWSGEATVRRDMDRFGFEATGFYAAYDGFIGLFPTGEEEDGLDVFEYRQEDATLYGFEAKADARLGEAGGFDFSAEASADYVRGELDDGGNLPRIPPLSGTLALIADRGNVSLRAEGRFVAEQDEITSFEMPTDSFALFNADARITPFADKDIAILVGVRNITDEEARLHTSFLKDQVPLPGRSVRAAISARF 704
BLAST of mRNA_C-australica_Contig_10343.1.1 vs. uniprot
Match: A0A550KGG5_9PROT (TonB-dependent receptor n=2 Tax=Glycocaulis profundi TaxID=2518983 RepID=A0A550KGG5_9PROT) HSP 1 Score: 308 bits (788), Expect = 1.130e-97 Identity = 149/247 (60.32%), Postives = 181/247 (73.28%), Query Frame = 1 Query: 1 GSGSIFSRPSDAWFLAATLSRTERAPTDAEVFSDGPHAATRAYERGDLNLDTEVAWSGEVTARYAQGRISAETNLFLADYDGFIGLFPTGEEEDGFDVFEYRQADAQLYGFEAQVNAELGEVRGWALSGEASLDYVRGELDDGGNLPRIPPLSSNLALIAERGMWSVRGEAHLVAEQDETTSFETETEGYAMFNADLEVTPFVERDVRVILGVRNLTDEEGRVHSSFLKDMVPLPGRSFRIAVRAGF 741 GSG++F RP + WF++ LSR+ERAPTD EVF+DG H AT YE GDL+L TE AWSGEV+AR+ G + AET F A YDGFI L TGEE +GF +FEYRQ DA LYGFEA + A LG G+ L EAS DYVR E+D GG+LPRIPP+S+ LAL AERG+WS+RGE VAEQ T + E T+GY + NA EVTPF RD+R+I GVRN+ DEE R H+SF+K+ VPLPGR+ R+AV F Sbjct: 414 GSGTVFLRPDENWFVSVNLSRSERAPTDLEVFADGVHVATNTYELGDLDLGTESAWSGEVSARWRSGGVRAETTAFYAKYDGFIALTATGEEREGFPLFEYRQQDADLYGFEASIEAPLGRAAGFDLIAEASADYVRAEIDAGGSLPRIPPMSATLALNAERGIWSLRGEGRFVAEQTRTGAEERPTDGYTLVNASAEVTPFAYRDIRIIAGVRNIFDEEARSHASFVKERVPLPGRNVRLAVSTRF 660
BLAST of mRNA_C-australica_Contig_10343.1.1 vs. uniprot
Match: A0A0P7VH17_9PROT (TonB-dependent zinc receptor n=1 Tax=Oceanicaulis sp. HLUCCA04 TaxID=1666904 RepID=A0A0P7VH17_9PROT) HSP 1 Score: 306 bits (785), Expect = 1.400e-96 Identity = 151/247 (61.13%), Postives = 191/247 (77.33%), Query Frame = 1 Query: 4 SGSIFSRPSDAWFLAATLSRTERAPTDAEVFSDGPHAATRAYERGDLNLDTEVAWSGEVTARYA-QGRISAETNLFLADYDGFIGLFPTGEEEDGFDVFEYRQADAQLYGFEAQVNAELGEVRGWALSGEASLDYVRGELDDGGNLPRIPPLSSNLALIAERGMWSVRGEAHLVAEQDETTSFETETEGYAMFNADLEVTPFVERDVRVILGVRNLTDEEGRVHSSFLKDMVPLPGRSFRIAVRAGF 741 SG++F RP+ WFLA TLSR+ERAP+D EVF++GPH AT+A+E G+LNL TEVAWS E TAR+ QG +SAE +F ADYDGFI LFPTG +EDG V EYRQ DA LYGFEA+++A L + G+ +GEAS DYVRGE+D GGNLPRI P+S++L++ A+ G S+RGEA LVAEQ + + E T+GY +FNAD PF ERDV++I VRN+TDEE R+HSSFLKD +PLPGR+ R+A+ A F Sbjct: 477 SGALFLRPAQGWFLAGTLSRSERAPSDVEVFANGPHLATQAFEIGNLNLSTEVAWSLEGTARFTGQGGLSAEAAVFYADYDGFIELFPTGAQEDGLPVLEYRQEDATLYGFEARISAPLFALSGFDFTGEASADYVRGEIDGGGNLPRISPMSASLSVTADNGPLSLRGEARLVAEQTDVFTNELPTDGYTLFNADARWRPFDERDVQLIFAVRNITDEEARIHSSFLKDFIPLPGRNVRVALSARF 723
BLAST of mRNA_C-australica_Contig_10343.1.1 vs. uniprot
Match: UPI001EDF21E9 (TonB-dependent receptor n=1 Tax=Shewanella sp. ER-Te-42B-Light TaxID=2872342 RepID=UPI001EDF21E9) HSP 1 Score: 290 bits (743), Expect = 2.760e-94 Identity = 150/247 (60.73%), Postives = 183/247 (74.09%), Query Frame = 1 Query: 4 SGSIFSRPSDAWFLAATLSRTERAPTDAEVFSDGPHAATRAYERGDLNLDTEVAWSGEVTARYAQGRISAETNLFLADYDGFIGLFPTGEEEDGFDVFEYRQADAQLYGFEAQVNAELGEVRGWALSGEASLDYVRGELDDGGNLPRIPPLSSNLALIAERGMWSVRGEAHLVAEQDETTSFETETEGYAMFNADLEVTPFVE-RDVRVILGVRNLTDEEGRVHSSFLKDMVPLPGRSFRIAVRAGF 741 SGS+F RP+D FLA TLSRTERAPTD E+FS+GPH AT +E GDL+L E AWS E TAR++ R SA+ N+F +DYDGFIGLF TG EED DVFEYRQ DA L GFE ELG+ G A S +A++DYV+G+ D GG+LPRIPPLSS + + A+ G S RGEA LV EQD+ +FE T+GY + NA +E PF E RDV +I GVRN+ DEE R H+SFLKD+VPLPGR+ R+A+RAGF Sbjct: 135 SGSLFFRPADQAFLAVTLSRTERAPTDTELFSNGPHLATETFEVGDLDLGVETAWSLEGTARWSGERWSAQANVFHSDYDGFIGLFGTGAEEDELDVFEYRQTDASLTGFEVSGRLELGDAFGAAWSMDAAVDYVQGDTD-GGDLPRIPPLSSLIGIEADFGSLSARGEARLVDEQDDVAAFELPTDGYTLLNASVEWRPFAEARDVALIAGVRNIADEEARAHTSFLKDLVPLPGRNVRLAIRAGF 380
BLAST of mRNA_C-australica_Contig_10343.1.1 vs. uniprot
Match: A0A3T0EC23_9PROT (TonB-dependent receptor n=1 Tax=Glycocaulis alkaliphilus TaxID=1434191 RepID=A0A3T0EC23_9PROT) HSP 1 Score: 299 bits (766), Expect = 5.750e-94 Identity = 147/247 (59.51%), Postives = 186/247 (75.30%), Query Frame = 1 Query: 4 SGSIFSRPSDAWFLAATLSRTERAPTDAEVFSDGPHAATRAYERGDLNLDTEVAWSGEVTARYAQ-GRISAETNLFLADYDGFIGLFPTGEEEDGFDVFEYRQADAQLYGFEAQVNAELGEVRGWALSGEASLDYVRGELDDGGNLPRIPPLSSNLALIAERGMWSVRGEAHLVAEQDETTSFETETEGYAMFNADLEVTPFVERDVRVILGVRNLTDEEGRVHSSFLKDMVPLPGRSFRIAVRAGF 741 SG++F RP++ WFLA TLSR+ERAP+D EV++DGPH AT+AYE G+L+L TEVAWS E TARY G +SAE ++F ADYDGFI LFPTG EEDG V E+RQ DA+LYGFEA+V+A L + G+ +GEAS+DYVRGE+D GGNLPRI P+S L++ A+ G S+R EA V+EQ E T+GY + NAD PF ERDV++I VRN+TDEE R+HSSFLKD +PLPGR+ R+A+ F Sbjct: 456 SGAVFLRPAEGWFLAGTLSRSERAPSDVEVYADGPHLATQAYEVGNLDLSTEVAWSIEGTARYTSAGGLSAEASVFYADYDGFIELFPTGAEEDGLPVLEFRQEDARLYGFEARVSAPLFALSGFDFTGEASIDYVRGEIDGGGNLPRISPMSGALSVTADNGPLSLRTEARFVSEQTRVFENELPTDGYTLLNADARWRPFAERDVQLIFAVRNITDEEARIHSSFLKDYIPLPGRNVRVALATRF 702
BLAST of mRNA_C-australica_Contig_10343.1.1 vs. uniprot
Match: UPI001667177E (TonB-dependent receptor n=1 Tax=Glycocaulis albus TaxID=1382801 RepID=UPI001667177E) HSP 1 Score: 298 bits (763), Expect = 1.720e-93 Identity = 149/249 (59.84%), Postives = 190/249 (76.31%), Query Frame = 1 Query: 4 SGSIFSRPSDAWFLAATLSRTERAPTDAEVFSDGPHAATRAYERGDLNLDTEVAWSGEVTARY-AQGRISAETNLFLADYDGFIGLFPTGEEEDGFDVFEYRQADAQLYGFEAQVNAELGEVRGWALSGEASLDYVRGELDDGGNLPRIPPLSSNLALIAERGMWSVRGEAHLVAEQDETTSFETE--TEGYAMFNADLEVTPFVERDVRVILGVRNLTDEEGRVHSSFLKDMVPLPGRSFRIAVRAGF 741 SG++F RP++ WFLA TLSR+ERAP+D E+F+DGPH AT+AYE G+L+L TE+AWS E TARY A +SAE +F ADYDGFI LFPTG EEDG V E+RQ DA+LYGFEA+++A L + G+ +GEAS+DYVRGE+D GGNLPRI P+S L++ A+ G S+R EA VAEQ T FETE T+GY + NAD PF +RD+++I VRN+TDEE R+HSSFLKD +PLPGR+ R+A+ A F Sbjct: 459 SGALFLRPAEGWFLAGTLSRSERAPSDVEMFADGPHLATQAYEIGNLDLSTEIAWSLEGTARYSAANGLSAEAAVFYADYDGFIELFPTGAEEDGLPVLEFRQEDARLYGFEARISAPLFAMSGFDFTGEASVDYVRGEIDSGGNLPRISPMSGTLSVTADNGPLSLRTEARFVAEQ--TRVFETELPTDGYTLLNADARWRPFAQRDLQIIFAVRNITDEEARIHSSFLKDFIPLPGRNVRLALAARF 705
BLAST of mRNA_C-australica_Contig_10343.1.1 vs. uniprot
Match: A0A550KIX3_9PROT (TonB-dependent receptor n=1 Tax=Glycocaulis profundi TaxID=2518983 RepID=A0A550KIX3_9PROT) HSP 1 Score: 287 bits (734), Expect = 7.520e-89 Identity = 143/248 (57.66%), Postives = 182/248 (73.39%), Query Frame = 1 Query: 1 GSGSIFSRPSDAWFLAATLSRTERAPTDAEVFSDGPHAATRAYERGDLNLDTEVAWSGEVTARYAQGR-ISAETNLFLADYDGFIGLFPTGEEEDGFDVFEYRQADAQLYGFEAQVNAELGEVRGWALSGEASLDYVRGELDDGGNLPRIPPLSSNLALIAERGMWSVRGEAHLVAEQDETTSFETETEGYAMFNADLEVTPFVERDVRVILGVRNLTDEEGRVHSSFLKDMVPLPGRSFRIAVRAGF 741 GSGS+F RP++ WF AATLSRTERAP+D EVF+DGPH ATRAYE GDL+L TE AWS E T+RY G + E + F ADYDGFI LFPT + + G V+E+RQ DA+LYG EA+V+A LGE+ G+ L+G AS+D VRGEL DG +LPRIPPLS + L +RG S+R + LVAEQ+ T FE T GYA++NAD+ P D+ + GVRN+TDEE RVH+S+LK+ +PLPGR+FR+ + F Sbjct: 495 GSGSVFVRPTEGWFAAATLSRTERAPSDVEVFADGPHLATRAYEVGDLDLGTETAWSIEGTSRYTAGNGVRLELSAFYADYDGFIELFPTDDFDHGLRVYEFRQQDAKLYGGEARVSAPLGELAGFGLTGAASVDIVRGELSDGHDLPRIPPLSGTVELRGDRGPLSLRTDVRLVAEQNRTFDFEYPTGGYALWNADVTWQPIEGNDLTLFAGVRNITDEEARVHTSYLKEFIPLPGRNFRLGLSTRF 742 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10343.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10343.1.1 >prot_C-australica_Contig_10343.1.1 ID=prot_C-australica_Contig_10343.1.1|Name=mRNA_C-australica_Contig_10343.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=248bp GSGSIFSRPSDAWFLAATLSRTERAPTDAEVFSDGPHAATRAYERGDLNLback to top mRNA from alignment at C-australica_Contig_10343:1..744+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10343.1.1 ID=mRNA_C-australica_Contig_10343.1.1|Name=mRNA_C-australica_Contig_10343.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=744bp|location=Sequence derived from alignment at C-australica_Contig_10343:1..744+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10343:1..744+ >mRNA_C-australica_Contig_10343.1.1 ID=mRNA_C-australica_Contig_10343.1.1|Name=mRNA_C-australica_Contig_10343.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=744bp|location=Sequence derived from alignment at C-australica_Contig_10343:1..744+ (Chrysoparadoxa australica CS_1217)back to top |