mRNA_C-australica_Contig_1034.2.3 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1034.2.3 vs. uniprot
Match: D8LSE1_ECTSI (Nitrite transporter NAR1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSE1_ECTSI) HSP 1 Score: 323 bits (829), Expect = 4.880e-100 Identity = 155/263 (58.94%), Postives = 204/263 (77.57%), Query Frame = 1 Query: 142 RGGEVLPPPAVYANVVGIGTKKASLPLFDLSLLSVLSGIHISFGGLLALTVGGNMPGIASANPGLQKILLGVCGLPFGLYMVLLNAGELFTGNTSLLSAAYIEKTASFTGVSRVWIVSFLGNLLGSLFMVKIADLAGIITSPAGSAGVALAKVSESFLTCFLRGMLCNWMVCMAIWIAVASSTLTEKFLAMVLPVSAFVAFGGEHSVANMFLVPMGMAMGAD--VTWADFLTKNLLPVTLGNIVGGVVCQTMPFAAIFGSLVS 924 RGG V PPP +YAN V +G +KA+ D+ LL +LSG HI FGGLLA+TVGG++P I SANPGLQK+L G+ GLPFGL+MVL+ GELFTGNT+L++AA +E A+ + + W S+ GNLLGS+ + K+ AGI +P +A +A++KVS FL FL+G++CNWMVCMA+W+A +++LTEK+LAM+LPVSAFVAFG EHSVANMFL+P+G+ GA V+W D KN+LPVTLGNIVGG +CQTMP+AA++GSL+ Sbjct: 67 RGGLVKPPPGLYANAVDLGARKAAASPVDIVLLGILSGFHIGFGGLLAVTVGGSIPAIKSANPGLQKLLFGLFGLPFGLFMVLVAGGELFTGNTALVTAALVEGKATVANLVKNWTCSWAGNLLGSVLLAKLVVAAGINAAPGTAAAIAVSKVSSPFLPTFLKGIVCNWMVCMAVWVAAGATSLTEKYLAMILPVSAFVAFGAEHSVANMFLLPLGLFSGASKSVSWQDLFVKNILPVTLGNIVGGALCQTMPYAAVYGSLLK 329
BLAST of mRNA_C-australica_Contig_1034.2.3 vs. uniprot
Match: A0A835ZQ31_9STRA (Formate/nitrite transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ31_9STRA) HSP 1 Score: 309 bits (791), Expect = 1.710e-95 Identity = 148/254 (58.27%), Postives = 194/254 (76.38%), Query Frame = 1 Query: 157 LPPPAVYANVVGIGTKKASLPLFDLSLLSVLSGIHISFGGLLALTVGGNMPGIASANPGLQKILLGVCGLPFGLYMVLLNAGELFTGNTSLLSAAYIEKTASFTGVSRVWIVSFLGNLLGSLFMVKIADLAGIITSPAGSAGVALAKVSESFLTCFLRGMLCNWMVCMAIWIAVASSTLTEKFLAMVLPVSAFVAFGGEHSVANMFLVPMGMAMGADVTWADFLTKNLLPVTLGNIVGGVVCQTMPFAAIFGSL 918 +PP A+YAN V IG KKA+ + LSV+SG HI+FG LLAL VG N+ + + NPGLQK+ G GLPFGL+MVL+ GELFTGN +++SAA+ E AS G+ + W +SF+GN +G++ + K+ AG++T PA + +A+AKV++ FLT FLRG++CNWMVCMA+W+A STL EK+LAMVLPVSAFVAFG EHS+ANM L+P+GMA GA V W DFLTKNLLPVTLGNIVGG +CQ P+ +++G+L Sbjct: 1 MPPAALYANAVAIGEKKAAAAPATIFKLSVVSGAHIAFGALLALVVGANVANMKTLNPGLQKLFFGAFGLPFGLFMVLVAGGELFTGNVAMVSAAFFEGKASLEGLLKSWSISFIGNFIGTILVCKLIVAAGMLTVPAIATEIAVAKVAKPFLTTFLRGIVCNWMVCMAVWVASGCSTLGEKYLAMVLPVSAFVAFGAEHSIANMALIPLGMAGGAKVKWIDFLTKNLLPVTLGNIVGGALCQAAPYGSVYGTL 254
BLAST of mRNA_C-australica_Contig_1034.2.3 vs. uniprot
Match: D7G4R6_ECTSI (Nitrite transporter NAR1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4R6_ECTSI) HSP 1 Score: 292 bits (748), Expect = 5.760e-88 Identity = 140/259 (54.05%), Postives = 188/259 (72.59%), Query Frame = 1 Query: 154 VLPPPAVYANVVGIGTKKASLPLFDLSLLSVLSGIHISFGGLLALTVGGNMPGIASANPGLQKILLGVCGLPFGLYMVLLNAGELFTGNTSLLSAAYIEKTASFTGVSRVWIVSFLGNLLGSLFMVKIADLAGIITSPAGSAGVALAKVSESFLTCFLRGMLCNWMVCMAIWIAVASSTLTEKFLAMVLPVSAFVAFGGEHSVANMFLVPMGMAMGADVTWADFLTKNLLPVTLGNIVGGVVCQTMPFAAIFGSLVSGK 930 V PPP +Y N V IG KKAS + L L+ ++SG HI FG LLA+++GGN PG+ + NPGLQKI+ G GLPFGL+M ++ GELFTGNT++++AA IE AS G+ + W+ S+LGN +GSL +V +A G++ +P + G+A AK S +F+ F RG+LCNW+VCMA+W++V++S KF A+ LP+SAFVA G +HSVANMFL+P+GMA+GA VTW+ FL NLLPVTLGNIVGG V ++ FGSL K Sbjct: 85 VKPPPQMYQNAVDIGQKKASGSVAKLFLMGIISGCHIGFGALLAVSIGGNCPGLLATNPGLQKIIFGAFGLPFGLFMTVVGGGELFTGNTAVVTAAVIEGKASIGGLLKNWVFSYLGNFVGSLLLVFLAVQGGVVVNPGSAMGIATAKTSLTFVQAFARGILCNWLVCMAVWMSVSASDAAGKFFAIFLPISAFVALGLDHSVANMFLIPLGMALGAGVTWSQFLLANLLPVTLGNIVGGAVAVCGLYSGAFGSLFGKK 343
BLAST of mRNA_C-australica_Contig_1034.2.3 vs. uniprot
Match: R1B4P7_EMIHU (Putative formate/nitrite transporter n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B4P7_EMIHU) HSP 1 Score: 266 bits (680), Expect = 8.910e-79 Identity = 145/295 (49.15%), Postives = 198/295 (67.12%), Query Frame = 1 Query: 37 IAALFALLLASAQASRGNTWTSLRAPGSGQAVKTLRGGEVLP-PPAVYANVVGIGTKKASLPLFDLSLLSVLSGIHISFGGLLALTVGGNMPGIASANPGLQKILLGVCGLPFGLYMVLLNAGELFTGNTSLLSAAYIEKTASFTGVSRVWIVSFLGNLLGSLFMVKIADLAGIITSP-AGSAGVALAKVSESFLTCFLRGMLCNWMVCMAIWIAVASSTLTEKFLAMVLPVSAFVAFGGEHSVANMFLVPMGMAMGADVTWADFLTKNLLPVTLGNIVGGVVCQTMPFAAIFGS 915 +++L ALL+A+A A+ G T + P + ++ LRGG VL PP + V G+KKA++P + L V SG+HI FG LL LTVGG PG+A +NPGL K++LG GLPFGL M LL+ ELFTGNT+L++ A IE A+ G+ + W+ S+ GNL GSL + + AG++ A +A VA+AK S +FL L+G+LCNW+VCMA+++A + K + + +S+FVA G EHSVANMFL+P+G+ GADV+W FL KNLLPVTLGNIVGG VC F ++FGS Sbjct: 1 MSSLRALLIAAAAATSGAR-TVVPQPAALTRLQRLRGGNVLATPPDGFDGAVAAGSKKAAMPADKVFRLGVFSGVHIGFGALLMLTVGGACPGLAESNPGLHKLVLGAFGLPFGLMMTLLSGAELFTGNTALVTMALIEGKATTAGLVKSWVSSYAGNLAGSLLLAGLVSAAGVLAGGGAAAAKVAVAKTSGAFLPTLLKGVLCNWLVCMAVYLASFAKDAAGKMVIIGFIISSFVAMGLEHSVANMFLIPLGILSGADVSWKAFLLKNLLPVTLGNIVGGAVCVGAAFCSVFGS 294
BLAST of mRNA_C-australica_Contig_1034.2.3 vs. uniprot
Match: A0A6U5HVT6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5HVT6_9STRA) HSP 1 Score: 266 bits (679), Expect = 4.280e-78 Identity = 132/257 (51.36%), Postives = 174/257 (67.70%), Query Frame = 1 Query: 160 PPPAVYANVVGIGTKKASLPLFDLSLLSVLSGIHISFGGLLALTVGGNMPGIASANPGLQKILLGVCGLPFGLYMVLLNAGELFTGNTSLLSAAYIEKTASFTGVSRVWIVSFLGNLLGSLFMVKIADLAGIITSPAGSAGVALAKVSESFLTCFLRGMLCNWMVCMAIWIAVASSTLTEKFLAMVLPVSAFVAFGGEHSVANMFLVPMGMAMGADVTWADFLTKNLLPVTLGNIVGGVVCQTMPFAAIFGSLVSGK 930 PP ++Y V G KAS P + L ++SG HI+FG LA+TVGG PG+AS+NPGLQKI+ G GLPFGL M L+ GELFTGNT+L++AAY E S + + + W S+LGN +GSL + +A G + S SA +A AK S FLT F+RG+LCNW+VCMA+++A ST+ K +A+ P+SAFVA G +HS+ANMFL+P+GM GA+VT A KNL+PVTLGNIVGG +C F + FG+ K Sbjct: 76 PPASLYQGAVAAGAAKASAPFGKIFKLGIVSGAHIAFGAFLAVTVGGACPGLASSNPGLQKIIFGSFGLPFGLIMTLITGGELFTGNTALVTAAYAEGKTSMSDLIKNWSASYLGNFVGSLLLAYLAYTGGTLGSAPASAAIATAKCSMPFLTAFVRGILCNWLVCMAVYMASGISTMGGKMVAVYFPISAFVALGLDHSIANMFLIPLGMMRGAEVTIAQMFMKNLIPVTLGNIVGGALCVAGGFGSAFGNWFEKK 332
BLAST of mRNA_C-australica_Contig_1034.2.3 vs. uniprot
Match: A0A448ZQ46_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQ46_9STRA) HSP 1 Score: 262 bits (670), Expect = 4.400e-77 Identity = 139/296 (46.96%), Postives = 194/296 (65.54%), Query Frame = 1 Query: 28 MRGIAALFALLLASAQASRGNTWTSLRAPGSGQAVKTLRGGEVLPPPAVYANVVGIGTKKASLPLFDLSLLSVLSGIHISFGGLLALTVGGNMPGIASANPGLQKILLGVCGLPFGLYMVLLNAGELFTGNTSLLSAAYIEKTASFTGVSRVWIVSFLGNLLGSLFMVKIADLAGIITSPAGSAGVALAKVSESFLTCFLRGMLCNWMVCMAIWIAVASSTLTEKFLAMVLPVSAFVAFGGEHSVANMFLVPMGMAMGADVTWADFLTKNLLPVTLGNIVGGVVCQTMPFAAIFGS 915 + G ++ FA++ ++ ++ T TS SG AV E+ PPP++Y V G KAS D+ L ++SG HI+FG LA+TVGG GIA+ NPGLQKI+ G GLPFGL M L+ GELFTGNT+L++AAY E S + + W+ S+ GNL+GSL + +A +G + + SA +A AK S + F+RG+LCNW+VCMA+++A +++ K A+ P+SAFVA G +HSVANMF++P+GM GAD+T FL KNL+PVTLGNIVGG +C PF ++FGS Sbjct: 13 LAGTSSAFAVIQPASSIAKATT-TSTILKLSGGAVGAGTAPELKPPPSLYQGAVAAGVGKASKTWGDIFKLGIVSGCHIAFGAYLAITVGGACSGIAAENPGLQKIIFGSFGLPFGLIMTLVTGGELFTGNTALVTAAYKEGKISGKDLIKNWVSSYTGNLVGSLLLAYLAYKSGTLAASPASAAIATAKCSLPWDVAFVRGILCNWLVCMAVYMASGCASMAGKMTAVYFPISAFVALGLDHSVANMFIIPLGMLRGADITIKAFLMKNLIPVTLGNIVGGALCVMAPFGSVFGS 307
BLAST of mRNA_C-australica_Contig_1034.2.3 vs. uniprot
Match: A0A7S0GAY3_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAY3_9STRA) HSP 1 Score: 259 bits (663), Expect = 4.090e-76 Identity = 145/310 (46.77%), Postives = 194/310 (62.58%), Query Frame = 1 Query: 25 DMRGIAALFALLLASAQASRGNTWTSLRAPGS----GQAVKTLRGGEVLP----PPAVYANVVGIGTKKASLPLFDLSLLSVLSGIHISFGGLLALTVGGNMPGIASANPGLQKILLGVCGLPFGLYMVLLNAGELFTGNTSLLSAAYIEKTASFTGVSRVWIVSFLGNLLGSLFMVKIADLAGIITSPAGSAGVALAKVSESFLTCFLRGMLCNWMVCMAIWIAVASSTLTEKFLAMVLPVSAFVAFGGEHSVANMFLVPMGMAMGADVTWADFLTKNLLPVTLGNIVGGVVCQTMPFAAIFGSLVSGK 930 R + ALF LL A+ A+ + S+ AP + A+K G + +P PPA+YA V GT KA P + L ++SG HI+FG LAL VGG P IA+ANPGLQKI+ G GLPFGL M L+ ELFTGNT+L++AA +E + + + W+ S+LGN +GSL + +A G + + +A +A AK S F F+RG+LCNW+VCMA+ +A S++ K A+ P+SAFVA G +HSVANMFL+P+GM GA++T AD KNL+PVTLGNIVGG VC P+ FGS S K Sbjct: 3 SQRILFALFGLLAAAPAAAFAS---SVIAPSATFARATAIKMSGGADAVPELKAPPALYAGAVAAGTAKALAPAEKIFTLGIVSGAHIAFGAFLALAVGGACPEIAAANPGLQKIIFGAFGLPFGLIMTLVTGAELFTGNTALVTAARMEGKITTKDLIKSWVSSYLGNFVGSLLLAYLAFNGGTLGNGPAAAAIATAKCSLPFKVAFIRGILCNWLVCMAVLMASGCSSMIGKMTAVWFPISAFVALGLDHSVANMFLIPLGMMRGAEITIADMFIKNLIPVTLGNIVGGAVCVMAPYGKTFGSWFSKK 309
BLAST of mRNA_C-australica_Contig_1034.2.3 vs. uniprot
Match: A0A835YP49_9STRA (Nitrite transporter NAR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP49_9STRA) HSP 1 Score: 260 bits (665), Expect = 4.610e-76 Identity = 134/250 (53.60%), Postives = 174/250 (69.60%), Query Frame = 1 Query: 166 PAVYANVVGIGTKKASLPLFDLSLLSVLSGIHISFGGLLALTVGGNMPGIASANPGLQKILLGVCGLPFGLYMVLLNAGELFTGNTSLLSAAYIEKTASFTGVSRVWIVSFLGNLLGSLFMVKIADLAGIITSPAGSAGVALAKVSESFLTCFLRGMLCNWMVCMAIWIAVASSTLTEKFLAMVLPVSAFVAFGGEHSVANMFLVPMGMAMGADVTWADFLTKNLLPVTLGNIVGGVVCQTMPFAAIFGS 915 PA+Y N V +G KKA++P+ + L +LSG HI FG LLA+TVGGN+P +A+ANPG QK LLG GLPFGL+M L+ GELFTGNT+L++AA +EK AS G+ + W +S+LGN LGSL + IA AGII PA GVA AK + + F RG+LCNW+VCMA++++ +S K A+ LP+SAFVA G +H VANMFL+P M +GAD+ FL +LLPVTLGNIVGG ++ FGS Sbjct: 77 PALYQNAVELGAKKAAMPINKILTLGILSGCHIGFGALLAVTVGGNVPEMAAANPGAQKFLLGAVGLPFGLFMTLVGGGELFTGNTALVTAALLEKRASLKGLLKSWSISYLGNFLGSLLLAAIAVNAGIIAVPALK-GVACAKAAVYPVQSFFRGLLCNWLVCMAVYMSAGASDAGGKLAAIFLPISAFVALGTDHCVANMFLLPAAMMVGADIGLGRFLFGHLLPVTLGNIVGGAAAVAGMYSLAFGS 325
BLAST of mRNA_C-australica_Contig_1034.2.3 vs. uniprot
Match: A0A8J9ST54_9CHLO (Probable formate transporter 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9ST54_9CHLO) HSP 1 Score: 258 bits (658), Expect = 4.550e-75 Identity = 130/256 (50.78%), Postives = 176/256 (68.75%), Query Frame = 1 Query: 151 EVLPPPAVYANVVGIGTKKASLPLFDLSLLSVLSGIHISFGGLLALTVGGNMPGIASANPGLQKILLGVCGLPFGLYMVLLNAGELFTGNTSLLSAAYIEKTASFTGVSRVWIVSFLGNLLGSLFMVKIADLAGIITSPAGSAGVALAKVSESFLTCFLRGMLCNWMVCMAIWIAVASSTLTEKFLAMVLPVSAFVAFGGEHSVANMFLVPMGMAMGADVTWADFLTKNLLPVTLGNIVGGVVCQTMPFAAIFGSL 918 E+ PPPA +A + G KA+L + + +L G I FG LAL+VGG PG+AS NPGLQKI+ G GLPFGL +VL+ ELFTGNT+L++A+ +E AS +++ W S+LGN GSL MV + G++ + A VA+AK S +F F RG+LCNW+V A+++A A+S+ K +A+ P+SAFVA G EHSVANMF+VP+G+A+GA V++A FLT NLLPVTLGNIVGG VC + +AA FG + Sbjct: 74 ELSPPPAAFAKAIAAGQSKAALSISKTFFMGILGGAFIGFGSFLALSVGGACPGLASTNPGLQKIVYGAFGLPFGLLLVLMCGAELFTGNTALVTASVLEGKASLEQLAKNWFFSYLGNFAGSLLMVTLVVSTGLLATAAAPLNVAVAKTSLTFAQAFSRGILCNWLVSAAVYMANAASSAPGKAVAVWFPISAFVALGLEHSVANMFMVPLGIALGAKVSFATFLTANLLPVTLGNIVGGAVCIALAYAACFGKM 329
BLAST of mRNA_C-australica_Contig_1034.2.3 vs. uniprot
Match: A0A1E7F978_9STRA (Form_Nir_trans-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F978_9STRA) HSP 1 Score: 256 bits (655), Expect = 7.700e-75 Identity = 127/255 (49.80%), Postives = 172/255 (67.45%), Query Frame = 1 Query: 151 EVLPPPAVYANVVGIGTKKASLPLFDLSLLSVLSGIHISFGGLLALTVGGNMPGIASANPGLQKILLGVCGLPFGLYMVLLNAGELFTGNTSLLSAAYIEKTASFTGVSRVWIVSFLGNLLGSLFMVKIADLAGIITSPAGSAGVALAKVSESFLTCFLRGMLCNWMVCMAIWIAVASSTLTEKFLAMVLPVSAFVAFGGEHSVANMFLVPMGMAMGADVTWADFLTKNLLPVTLGNIVGGVVCQTMPFAAIFGS 915 E+ PP A+Y V G KAS D+ L ++SG HI+FG LA+TVGG PGIA+ NPGLQKI+ G GLPFGL M L+ GELFTGNT+L++AAY E + + W+ S+ GN +GSL + +A +G + S SA +A AK S + F+RG+LCNW+VCMA+++A +++ K A+ P+SAFVA G +HSVANMF++P+GM GA++T FL KNL+PVTLGNIVGG +C PF +FG+ Sbjct: 58 ELKPPAALYQGAVAAGVAKASKSWIDIFKLGIVSGCHIAFGAYLAITVGGACPGIAAENPGLQKIIFGSFGLPFGLIMTLVTGGELFTGNTALVTAAYKEGKIEGKALIKNWVASYAGNFVGSLLLAYLAFKSGTLASGPASAAIATAKCSLPWDVAFVRGILCNWLVCMAVYMASGCTSMIGKMTAVYFPISAFVALGLDHSVANMFIIPLGMLRGAEITTQAFLFKNLIPVTLGNIVGGALCVMAPFGDVFGT 312 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1034.2.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1034.2.3 >prot_C-australica_Contig_1034.2.3 ID=prot_C-australica_Contig_1034.2.3|Name=mRNA_C-australica_Contig_1034.2.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=302bp MRGIAALFALLLASAQASRGNTWTSLRAPGSGQAVKTLRGGEVLPPPAVYback to top mRNA from alignment at C-australica_Contig_1034:9742..14736+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1034.2.3 ID=mRNA_C-australica_Contig_1034.2.3|Name=mRNA_C-australica_Contig_1034.2.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4995bp|location=Sequence derived from alignment at C-australica_Contig_1034:9742..14736+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1034:9742..14736+ >mRNA_C-australica_Contig_1034.2.3 ID=mRNA_C-australica_Contig_1034.2.3|Name=mRNA_C-australica_Contig_1034.2.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=906bp|location=Sequence derived from alignment at C-australica_Contig_1034:9742..14736+ (Chrysoparadoxa australica CS_1217)back to top |