mRNA_C-australica_Contig_1032.9.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1032.9.1
Unique NamemRNA_C-australica_Contig_1032.9.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1032.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1032contigC-australica_Contig_1032:14452..15321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size871
Hectar predicted targeting categoryother localisation
Exons1
Cds size843
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586769.9930475-UTR-C-australica_Contig_1032:14451..144781682586769.9930475-UTR-C-australica_Contig_1032:14451..14478Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1032 14452..14478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586770.0035043-CDS-C-australica_Contig_1032:14478..153211682586770.0035043-CDS-C-australica_Contig_1032:14478..15321Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 14479..15321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1032.9.1prot_C-australica_Contig_1032.9.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1032 14479..15321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1032.9.1

>prot_C-australica_Contig_1032.9.1 ID=prot_C-australica_Contig_1032.9.1|Name=mRNA_C-australica_Contig_1032.9.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=281bp
MRVVDLREHLDRLGLSVKGNKAALLERLREAVLSSEAEAAPEAEVMAKSD
VQEAGDEIASHEVADGIDVGGPRRGSRGFLGFIFGSTQAGSDAAAAEPAR
VKADAMHEEEKEPVVASEMNDIAIAIDDMKVSDLREELIQRSLSTSGRKA
DLQARLREALSASPAGGGEPEQEASDAEEGGGEEEADAGLPFESAYYKGE
LMTGMTVRELKGHLKGLGVTLPGKRLLKAELIEMLMEAAAGGGATLSEQG
EEEGERQGGDRKVLEGIDAAAVKGMAVVELR
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mRNA from alignment at C-australica_Contig_1032:14452..15321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1032.9.1 ID=mRNA_C-australica_Contig_1032.9.1|Name=mRNA_C-australica_Contig_1032.9.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=870bp|location=Sequence derived from alignment at C-australica_Contig_1032:14452..15321+ (Chrysoparadoxa australica CS_1217)
TTACTGACACCAGCTGAGATCGACTCCATGAGGGTCGTTGACCTTCGTGA
GCATCTTGATCGGCTTGGGCTCTCTGTGAAAGGGAACAAGGCTGCTCTGT
TGGAGCGCCTGAGGGAGGCCGTGCTGTCATCAGAAGCAGAAGCGGCTCCG
GAGGCTGAGGTTATGGCCAAGTCAGATGTTCAGGAGGCTGGCGATGAAAT
AGCTAGCCATGAGGTTGCTGATGGCATTGATGTTGGTGGGCCAAGGAGAG
GTTCCCGGGGGTTTCTAGGGTTCATATTTGGCTCAACGCAAGCAGGTAGT
GATGCAGCTGCAGCAGAGCCTGCTCGTGTGAAAGCTGATGCAATGCATGA
GGAGGAAAAGGAGCCGGTTGTTGCGAGTGAGATGAATGACATTGCCATTG
CCATTGATGACATGAAGGTCTCTGACCTGCGAGAAGAGTTGATACAACGT
AGTCTAAGCACATCCGGAAGGAAGGCTGACCTGCAGGCAAGGCTGCGTGA
AGCTTTGTCTGCTAGTCCTGCTGGTGGAGGTGAACCAGAGCAAGAAGCTA
GTGATGCTGAGGAGGGTGGAGGTGAGGAGGAAGCTGATGCAGGCTTACCT
TTTGAGTCAGCATATTATAAGGGCGAGTTGATGACAGGCATGACCGTGCG
GGAGCTAAAGGGCCACTTGAAAGGGCTAGGTGTTACGTTGCCTGGCAAGC
GGCTGCTCAAGGCTGAGCTGATTGAGATGCTTATGGAGGCAGCAGCAGGG
GGCGGTGCTACTTTGAGTGAGCAAGGAGAGGAGGAGGGGGAACGGCAGGG
AGGTGATAGGAAGGTGCTTGAAGGGATAGATGCAGCTGCGGTGAAAGGCA
TGGCAGTGGTGGAGCTTCGG
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Coding sequence (CDS) from alignment at C-australica_Contig_1032:14452..15321+

>mRNA_C-australica_Contig_1032.9.1 ID=mRNA_C-australica_Contig_1032.9.1|Name=mRNA_C-australica_Contig_1032.9.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=843bp|location=Sequence derived from alignment at C-australica_Contig_1032:14452..15321+ (Chrysoparadoxa australica CS_1217)
ATGAGGGTCGTTGACCTTCGTGAGCATCTTGATCGGCTTGGGCTCTCTGT
GAAAGGGAACAAGGCTGCTCTGTTGGAGCGCCTGAGGGAGGCCGTGCTGT
CATCAGAAGCAGAAGCGGCTCCGGAGGCTGAGGTTATGGCCAAGTCAGAT
GTTCAGGAGGCTGGCGATGAAATAGCTAGCCATGAGGTTGCTGATGGCAT
TGATGTTGGTGGGCCAAGGAGAGGTTCCCGGGGGTTTCTAGGGTTCATAT
TTGGCTCAACGCAAGCAGGTAGTGATGCAGCTGCAGCAGAGCCTGCTCGT
GTGAAAGCTGATGCAATGCATGAGGAGGAAAAGGAGCCGGTTGTTGCGAG
TGAGATGAATGACATTGCCATTGCCATTGATGACATGAAGGTCTCTGACC
TGCGAGAAGAGTTGATACAACGTAGTCTAAGCACATCCGGAAGGAAGGCT
GACCTGCAGGCAAGGCTGCGTGAAGCTTTGTCTGCTAGTCCTGCTGGTGG
AGGTGAACCAGAGCAAGAAGCTAGTGATGCTGAGGAGGGTGGAGGTGAGG
AGGAAGCTGATGCAGGCTTACCTTTTGAGTCAGCATATTATAAGGGCGAG
TTGATGACAGGCATGACCGTGCGGGAGCTAAAGGGCCACTTGAAAGGGCT
AGGTGTTACGTTGCCTGGCAAGCGGCTGCTCAAGGCTGAGCTGATTGAGA
TGCTTATGGAGGCAGCAGCAGGGGGCGGTGCTACTTTGAGTGAGCAAGGA
GAGGAGGAGGGGGAACGGCAGGGAGGTGATAGGAAGGTGCTTGAAGGGAT
AGATGCAGCTGCGGTGAAAGGCATGGCAGTGGTGGAGCTTCGG
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