mRNA_C-australica_Contig_1032.3.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A7S4JP54_9STRA (Protein xylosyltransferase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JP54_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 8.420e-16 Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 1 Query: 1 LHVGSQWFVIPPSYAAWLLNDT--ALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFSS---NKEH-------CLMPSPTHCGRSP 255
L SQWF++ +A +L + LV +YA+H+VVADE FF T+L+H+ +CH H N NFL+ F +KE C+MP P HCGRSP
Sbjct: 253 LMTSSQWFILSREFAKYLADAAPGTLVHDMLEYAEHMVVADEQFFGTVLRHTKYCHKHHNGNFLFLEFGKWEDSKEEEARDPRKCVMPDPNHCGRSP 349
BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A7S2UAF3_9STRA (Protein xylosyltransferase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAF3_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 4.030e-15 Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1 Query: 1 LHVGSQWFVIPPSYAAWLLNDT--ALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFSS----------NKEHCLMPSPTHCGRSP 255
L+ SQWFV+ +A +L + V F Y +H+ +ADE FF T+L ++P CH H N+NFL+ F + CLMP P HCGRSP
Sbjct: 391 LYTASQWFVLSREFAKYLADPLPGTFVFDFLPYVEHVAIADETFFGTVLMNTPFCHKHHNDNFLHLQFDRWENEVDEEKRDPRKCLMPKPDHCGRSP 487
BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A1Z5KH39_FISSO (Protein xylosyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KH39_FISSO) HSP 1 Score: 77.4 bits (189), Expect = 1.400e-14 Identity = 38/97 (39.18%), Postives = 53/97 (54.64%), Query Frame = 1 Query: 1 LHVGSQWFVIPPSYAAWLLNDT--ALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFSS----------NKEHCLMPSPTHCGRSP 255
+ SQWF+I +A +L + V + Y +H+VVADE FF T+L+H+ CH H N NFL+ F ++ C MP+P HCGRSP
Sbjct: 372 MFTSSQWFIISRDFAEYLATPEPGSFVHDYLTYIEHVVVADETFFGTVLRHTSFCHQHHNRNFLHLQFDRWESELPAGLRDERKCPMPNPDHCGRSP 468
BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: B7FSV5_PHATC (Protein xylosyltransferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSV5_PHATC) HSP 1 Score: 75.9 bits (185), Expect = 4.870e-14 Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 1 Query: 1 LHVGSQWFVIPPSYAAWLLNDTA--LVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASF--------SSNKE--HCLMPSPTHCGRSPKASPGD 273
L SQWF+I +A +L A V + Y +H+VVADE FF T+L+H+P C H N NFL+ F S++++ C+M P HCGRSP D
Sbjct: 341 LFTSSQWFIISREFAEYLARAEAGTFVHQYLDYIEHVVVADETFFGTVLRHTPFCLKHHNRNFLHLQFDRWESELPSNDRDPRKCMMLDPNHCGRSPTTLTAD 443
BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A7S3V934_9STRA (Protein xylosyltransferase (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V934_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 5.520e-14 Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 1 Query: 1 LHVGSQWFVIPPSYAAWLLNDT----ALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFSS----------NKEHCLMPSPTHCGRSP 255
LH SQWF+I +A + + V + QYA+H+VVADE FF T+L+H+ C H N NFLY +F + C+M P CGRSP
Sbjct: 70 LHTSSQWFIISREFAEYFATASDQPGTFVHEYIQYAEHVVVADEHFFGTVLRHTEFCTKHHNSNFLYLTFDRWESDMPNFERDPRKCIMVDPDKCGRSP 168
BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A8J2SSV4_9STRA (Protein xylosyltransferase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSV4_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 8.960e-14 Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 1 Query: 1 LHVGSQWFVIPPSYAAWLLNDTA------LVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASF-----------SSNKEHCLMPSPTHCGRSP 255
+++GSQW VI +AA+ + + Y ++ +VADE FF+T+LK+SP CH H N+NFL+ F + NK CL P P HCGRSP
Sbjct: 289 MYMGSQWMVITRDFAAYATGRESPRQRRSFASQYAPYGRYTMVADENFFTTVLKNSPMCHKHYNQNFLHVQFDQWESDKVEGPAQNK--CLQPDPRHCGRSP 388
BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A1Z5KSA0_FISSO (Protein xylosyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSA0_FISSO) HSP 1 Score: 74.3 bits (181), Expect = 1.690e-13 Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 1 Query: 1 LHVGSQWFVIPPSYAAWLLNDT--ALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFSS----------NKEHCLMPSPTHCGRSP 255
+ SQWF+I +A +L + V + Y +H+VVADE FF T+L+H+ C H N NFL+ F ++ C MP+P HCGRSP
Sbjct: 365 MFTSSQWFIISRDFAEYLATPEPGSFVHDYLTYIEHVVVADETFFGTVLRHTSFCRQHHNRNFLHLQFDRWESELPAGLRDERKCPMPNPDHCGRSP 461
BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A7S2L4F4_9STRA (Protein xylosyltransferase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L4F4_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.070e-12 Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = 1 Query: 1 LHVGSQWFVIPPSYAAWLLND--TALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFSS-----------NKEHCLMPSPTHCGRSP 255
+H SQWF+I +A ++ N +LV + Y +H+VVADE FF T+L+++ C N+NFL+ F S + C+M +P HCGRSP
Sbjct: 74 IHTSSQWFIISREFAWYIANPPKNSLVDYLRDYMEHVVVADESFFGTVLRNTHFCSTLHNDNFLHIQFGSWENEDKSANQRDPRKCVMRNPDHCGRSP 171
BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: B8LEP4_THAPS (Protein xylosyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEP4_THAPS) HSP 1 Score: 63.5 bits (153), Expect = 1.490e-10 Identity = 32/96 (33.33%), Postives = 53/96 (55.21%), Query Frame = 1 Query: 1 LHVGSQWFVIPPSYAAWLLNDT--ALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFSS---------NKEHCLMPSPTHCGRSP 255
++ SQWF+I +A +L + + V ++ Y +H+VVADE FF T+++++ C N+NFL+ F ++ CL + HCGRSP
Sbjct: 27 IYTSSQWFIISRDFAWYLASPPKDSFVDYYLDYIEHVVVADEAFFGTVIRNTHFCSTLHNDNFLHIQFDRWENEAEGERDQRKCLFKNRDHCGRSP 122
BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Match: A0A7S4RM73_9STRA (Protein xylosyltransferase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RM73_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 2.030e-10 Identity = 35/97 (36.08%), Postives = 49/97 (50.52%), Query Frame = 1 Query: 1 LHVGSQWFVIPPSYAAWLLNDT--ALVPHFTQYAQHIVVADEVFFSTLLKHSPHCHDHVNENFLYASFS--SNKEH--------CLMPSPTHCGRSP 255
++ SQWF+ +A ++ + +Y +H+VVADE FF TLL+HSP C H N NFL+ F N+E C+ CGRSP
Sbjct: 186 IYTASQWFIASREFAKYIAEAVPGTIAHSLIEYMKHVVVADESFFGTLLRHSPFCRKHHNSNFLHLHFDRWENEEENAKRDERKCIFRDRERCGRSP 282 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1032.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1032.3.1 >prot_C-australica_Contig_1032.3.1 ID=prot_C-australica_Contig_1032.3.1|Name=mRNA_C-australica_Contig_1032.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=93bp LHVGSQWFVIPPSYAAWLLNDTALVPHFTQYAQHIVVADEVFFSTLLKHSback to top mRNA from alignment at C-australica_Contig_1032:4597..5042+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1032.3.1 ID=mRNA_C-australica_Contig_1032.3.1|Name=mRNA_C-australica_Contig_1032.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=446bp|location=Sequence derived from alignment at C-australica_Contig_1032:4597..5042+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1032:4597..5042+ >mRNA_C-australica_Contig_1032.3.1 ID=mRNA_C-australica_Contig_1032.3.1|Name=mRNA_C-australica_Contig_1032.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=279bp|location=Sequence derived from alignment at C-australica_Contig_1032:4597..5042+ (Chrysoparadoxa australica CS_1217)back to top |