mRNA_C-australica_Contig_10319.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_10319.1.1 vs. uniprot
Match: A0A2E5AHL0_9PROT (Replication-associated recombination protein A n=3 Tax=Oceanicaulis TaxID=153232 RepID=A0A2E5AHL0_9PROT) HSP 1 Score: 389 bits (998), Expect = 2.200e-132 Identity = 193/227 (85.02%), Postives = 206/227 (90.75%), Query Frame = 1 Query: 1 DGRYLLNLAEEVFALAPEEPLEVSDLAGVLQRRAPAYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLNAGEDPMYLARRIVRMANEDIGLADAGAVHAALAAKDVYEFLGSPEGDLALAQAVVHLACAPKSNAVYKAWKGALRTAKDTGSLMPPKHILNAPTKLMKSEGYGKGYEYDHDAEGGVSGQNYFPDEMRERPVFYEPTERGREAALKERLERFRAIR 681
DGRY+LNLAEE+ AL PE PL++ DL+ VLQ+RAP YDKDREEHYNLISALHKSVRGSDPDAALYWLARML+AGEDP+YLARRIVRMANE+IGLAD GAVHAALAAKDVYEFLGSPEGDLALAQAVVH+ACAPKSNAVY AWK ALRTAK TGSLMPP HILNAPTKLMK GYGKGYEYDHD EGGVSGQNYFP EM + P FYEP +GREAAL ERLERFRA+R
Sbjct: 204 DGRYMLNLAEELIALKPETPLDLKDLSSVLQKRAPVYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLSAGEDPLYLARRIVRMANEEIGLADPGAVHAALAAKDVYEFLGSPEGDLALAQAVVHIACAPKSNAVYTAWKAALRTAKGTGSLMPPAHILNAPTKLMKEVGYGKGYEYDHDVEGGVSGQNYFPTEMGKPPTFYEPKPQGREAALLERLERFRAVR 430
BLAST of mRNA_C-australica_Contig_10319.1.1 vs. uniprot
Match: UPI001F1EC238 (replication-associated recombination protein A n=1 Tax=Hyphobacterium sp. SN044 TaxID=2912575 RepID=UPI001F1EC238) HSP 1 Score: 388 bits (997), Expect = 3.010e-132 Identity = 189/227 (83.26%), Postives = 212/227 (93.39%), Query Frame = 1 Query: 1 DGRYLLNLAEEVFALAPEEPLEVSDLAGVLQRRAPAYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLNAGEDPMYLARRIVRMANEDIGLADAGAVHAALAAKDVYEFLGSPEGDLALAQAVVHLACAPKSNAVYKAWKGALRTAKDTGSLMPPKHILNAPTKLMKSEGYGKGYEYDHDAEGGVSGQNYFPDEMRERPVFYEPTERGREAALKERLERFRAIR 681
DGRYLLNLAEEVF P+ PL+ +++A +LQ+RAPAYDKDREEHYNLISALHK+VRGSDPDAALYWLARML AGEDP++LARRIVRMA EDIGLAD A+HAALAAKDVY+FLGSPEG+LALAQAVVHLACAPKSNAVY AWKGA++TA++TGSLMPPKHILNAPTKLMKSEGYG GYEYDHDAEGGVSGQ+YFPDEM+ERPVFY PT+RGREA + ERLER+R+IR
Sbjct: 204 DGRYLLNLAEEVFESEPDHPLDPAEIAELLQKRAPAYDKDREEHYNLISALHKAVRGSDPDAALYWLARMLGAGEDPLFLARRIVRMAIEDIGLADPTAIHAALAAKDVYDFLGSPEGELALAQAVVHLACAPKSNAVYTAWKGAMKTARETGSLMPPKHILNAPTKLMKSEGYGSGYEYDHDAEGGVSGQDYFPDEMKERPVFYRPTDRGREAVIAERLERWRSIR 430
BLAST of mRNA_C-australica_Contig_10319.1.1 vs. uniprot
Match: A0A2U2BRQ3_9PROT (Replication-associated recombination protein A n=1 Tax=Marinicauda salina TaxID=2135793 RepID=A0A2U2BRQ3_9PROT) HSP 1 Score: 377 bits (967), Expect = 1.000e-127 Identity = 188/230 (81.74%), Postives = 207/230 (90.00%), Query Frame = 1 Query: 1 DGRYLLNLAEEVFALAPEEPLEVSDLAGVLQRRAPAYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLNAGEDPMYLARRIVRMANEDIGLADAGAVHAALAAKDVYEFLGSPEGDLALAQAVVHLACAPKSNAVYKAWKGALRTAKDTGSLMPPKHILNAPTKLMKSEGYGKGYEYDHDAEGGVSGQNYFPDEMRERPVFYEPTERGREAALKERLERFRAIRRGR 690
DGRYLLNLAEEV AL E+PLE++DL VLQRRAP YDKDREEHYNLISALHKSVRGSDPDAALYWLARML GEDP++LARRIVRMANEDIGLAD AVHAALAAK+VY+FLGSPEG+LALAQAVVHLACAPKSNAVYKA+ A+R AK TGSLMPPKHILNAPTKLMKSEGYG GYEYDH EGGVSGQ+YFP+ M +RPVFY PT+ GREAA++ERLER+R +R+ R
Sbjct: 204 DGRYLLNLAEEVLALDAEQPLELADLGEVLQRRAPVYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLAGGEDPLFLARRIVRMANEDIGLADPTAVHAALAAKEVYDFLGSPEGELALAQAVVHLACAPKSNAVYKAYGAAMRAAKQTGSLMPPKHILNAPTKLMKSEGYGSGYEYDHAVEGGVSGQDYFPEAMTDRPVFYSPTDHGREAAIRERLERWRGLRKDR 433
BLAST of mRNA_C-australica_Contig_10319.1.1 vs. uniprot
Match: UPI001EDDCC42 (replication-associated recombination protein A n=1 Tax=Shewanella sp. ER-Te-42B-Light TaxID=2872342 RepID=UPI001EDDCC42) HSP 1 Score: 376 bits (966), Expect = 1.470e-127 Identity = 185/230 (80.43%), Postives = 210/230 (91.30%), Query Frame = 1 Query: 1 DGRYLLNLAEEVFALAPEEPLEVSDLAGVLQRRAPAYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLNAGEDPMYLARRIVRMANEDIGLADAGAVHAALAAKDVYEFLGSPEGDLALAQAVVHLACAPKSNAVYKAWKGALRTAKDTGSLMPPKHILNAPTKLMKSEGYGKGYEYDHDAEGGVSGQNYFPDEMRERPVFYEPTERGREAALKERLERFRAIRRGR 690
DGRYLLNLAE+VFA AP+ PL+ + L ++QRRAP+YDK + HYNLISALHKS+RGSDPDAALYWLARML AGEDP++LARR+VRMANEDIGLAD GAVHAALAAKDVY+FLGSPEG+LALAQAVVHLACAPKSNAVYKAWK A+R+AK TGSL PPKHILNAPTKLMK+EGYG+GYEYDHDA GGVSGQ+YFPDEM +RPVFYEP + GREA LKERL+R+RA+R+ R
Sbjct: 204 DGRYLLNLAEQVFAAAPDAPLDPAGLGQLVQRRAPSYDKAGDSHYNLISALHKSIRGSDPDAALYWLARMLEAGEDPLFLARRLVRMANEDIGLADPGAVHAALAAKDVYDFLGSPEGELALAQAVVHLACAPKSNAVYKAWKAAVRSAKATGSLSPPKHILNAPTKLMKAEGYGQGYEYDHDAAGGVSGQDYFPDEMTDRPVFYEPKDGGREAQLKERLDRWRALRKER 433
BLAST of mRNA_C-australica_Contig_10319.1.1 vs. uniprot
Match: A0A3C2E430_9PROT (Replication-associated recombination protein A n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A3C2E430_9PROT) HSP 1 Score: 375 bits (963), Expect = 4.330e-127 Identity = 184/227 (81.06%), Postives = 204/227 (89.87%), Query Frame = 1 Query: 1 DGRYLLNLAEEVFALAPEEPLEVSDLAGVLQRRAPAYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLNAGEDPMYLARRIVRMANEDIGLADAGAVHAALAAKDVYEFLGSPEGDLALAQAVVHLACAPKSNAVYKAWKGALRTAKDTGSLMPPKHILNAPTKLMKSEGYGKGYEYDHDAEGGVSGQNYFPDEMRERPVFYEPTERGREAALKERLERFRAIR 681
DGRYLLNLAEEVF P LE ++A +LQ+RAPAYDKDR+EHYNLISALHKS+RGSDPDAALYWLARML AGEDP+YLARR+VRMANEDIGLAD A+HAALAAKDVY+FLGSPEG+LALAQAVVHLA APKSNAVY AWKGA+R A++TGSLMPPKHILNAPTKLMKSEGYG GYEYDHDA GG+SGQ+YFPDEMR+RPV Y PT+RGREAA+ ERL +R IR
Sbjct: 204 DGRYLLNLAEEVFESPPGHNLEPGEIAELLQKRAPAYDKDRDEHYNLISALHKSIRGSDPDAALYWLARMLGAGEDPLYLARRLVRMANEDIGLADPTAIHAALAAKDVYDFLGSPEGELALAQAVVHLAAAPKSNAVYTAWKGAMRLARETGSLMPPKHILNAPTKLMKSEGYGSGYEYDHDAAGGISGQDYFPDEMRDRPVLYSPTDRGREAAIAERLAHWRGIR 430
BLAST of mRNA_C-australica_Contig_10319.1.1 vs. uniprot
Match: A0A5M6ZI18_9PROT (Replication-associated recombination protein A n=1 Tax=Alkalicaulis satelles TaxID=2609175 RepID=A0A5M6ZI18_9PROT) HSP 1 Score: 374 bits (961), Expect = 8.430e-127 Identity = 188/230 (81.74%), Postives = 204/230 (88.70%), Query Frame = 1 Query: 1 DGRYLLNLAEEVFALAPEEPLEVSDLAGVLQRRAPAYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLNAGEDPMYLARRIVRMANEDIGLADAGAVHAALAAKDVYEFLGSPEGDLALAQAVVHLACAPKSNAVYKAWKGALRTAKDTGSLMPPKHILNAPTKLMKSEGYGKGYEYDHDAEGGVSGQNYFPDEMRERPVFYEPTERGREAALKERLERFRAIRRGR 690
DGRYLLNLAE+VF PE L+ + L ++QRRAP YDKDRE HYNLISALHKSVRGSDPDAALYWLARML AGEDP+YLARR+VRMANEDIGLAD GAVHAALAAKDVY+FLGSPEG+LALAQAVVHLACAPKSNAVY AWK A RTAK TGSL PPKHILNAPTKLMK+EGYG GYEYDHDA GVSGQ+YFPDEM ERPVFY+P +RGREA LKERL R+RA+R+ R
Sbjct: 204 DGRYLLNLAEQVFTAEPEAALDPAGLGALVQRRAPVYDKDREGHYNLISALHKSVRGSDPDAALYWLARMLEAGEDPLYLARRLVRMANEDIGLADPGAVHAALAAKDVYDFLGSPEGELALAQAVVHLACAPKSNAVYAAWKAAQRTAKATGSLNPPKHILNAPTKLMKAEGYGAGYEYDHDAPDGVSGQDYFPDEMGERPVFYQPGDRGREAQLKERLARWRALRKER 433
BLAST of mRNA_C-australica_Contig_10319.1.1 vs. uniprot
Match: A0A4S2H3A3_9PROT (Replication-associated recombination protein A n=1 Tax=Marinicauda algicola TaxID=2029849 RepID=A0A4S2H3A3_9PROT) HSP 1 Score: 373 bits (958), Expect = 1.980e-126 Identity = 189/227 (83.26%), Postives = 203/227 (89.43%), Query Frame = 1 Query: 1 DGRYLLNLAEEVFALAPEEPLEVSDLAGVLQRRAPAYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLNAGEDPMYLARRIVRMANEDIGLADAGAVHAALAAKDVYEFLGSPEGDLALAQAVVHLACAPKSNAVYKAWKGALRTAKDTGSLMPPKHILNAPTKLMKSEGYGKGYEYDHDAEGGVSGQNYFPDEMRERPVFYEPTERGREAALKERLERFRAIR 681
DGRYLLNLAEEV AL P+ PL ++DL+GVLQRRAP YDKDREEHYNLISALHKSVRGSDPDAALYWLARML GEDP+YLARRIVRMANEDIGLAD AVHAALAAKDVY+FLGSPEG+LALAQAVVHLA APKSNAVY AWK A R AK+TGSLMPPKHILNAPT+LMK EGYGKGY YDHD EGGVSGQNYFP+EM ERP FY P + GREAA+KERLER+ +R
Sbjct: 204 DGRYLLNLAEEVLALQPDAPLGLADLSGVLQRRAPVYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLAGGEDPLYLARRIVRMANEDIGLADPTAVHAALAAKDVYDFLGSPEGELALAQAVVHLASAPKSNAVYTAWKAAQRAAKETGSLMPPKHILNAPTRLMKEEGYGKGYRYDHDVEGGVSGQNYFPEEM-ERPRFYAPKDVGREAAIKERLERWGKLR 429
BLAST of mRNA_C-australica_Contig_10319.1.1 vs. uniprot
Match: A0A550K784_9PROT (Replication-associated recombination protein A n=1 Tax=Glycocaulis profundi TaxID=2518983 RepID=A0A550K784_9PROT) HSP 1 Score: 372 bits (955), Expect = 6.850e-126 Identity = 186/227 (81.94%), Postives = 204/227 (89.87%), Query Frame = 1 Query: 1 DGRYLLNLAEEVFALAPEEPLEVSDLAGVLQRRAPAYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLNAGEDPMYLARRIVRMANEDIGLADAGAVHAALAAKDVYEFLGSPEGDLALAQAVVHLACAPKSNAVYKAWKGALRTAKDTGSLMPPKHILNAPTKLMKSEGYGKGYEYDHDAEGGVSGQNYFPDEMRERPVFYEPTERGREAALKERLERFRAIR 681
DGRY+LNLAEE AL P PL +DLA +LQ+RAP YDKDREEHYNLISALHKSVRGSDPDAALYWLARML GEDP+YLARRIVRMANEDIGLAD AVHAALAAKDVY+FLGSPEG+LALAQAVVHLA APKSNAVY AWK A+R+A++TGSLMPPKHILNAPTKLMKSEGYGKGYEYDHDAEGGVSGQ+YFP+EM++RP FY+P GREAA+KERLE + IR
Sbjct: 204 DGRYILNLAEEALALDPPAPLTPADLARMLQKRAPVYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLAGGEDPLYLARRIVRMANEDIGLADPTAVHAALAAKDVYDFLGSPEGELALAQAVVHLAAAPKSNAVYVAWKAAMRSARETGSLMPPKHILNAPTKLMKSEGYGKGYEYDHDAEGGVSGQDYFPEEMKDRPRFYDPKPVGREAAIKERLEAWGKIR 430
BLAST of mRNA_C-australica_Contig_10319.1.1 vs. uniprot
Match: A0A4S2H806_9PROT (Replication-associated recombination protein A n=1 Tax=Marinicauda pacifica TaxID=1133559 RepID=A0A4S2H806_9PROT) HSP 1 Score: 366 bits (939), Expect = 1.500e-123 Identity = 186/228 (81.58%), Postives = 206/228 (90.35%), Query Frame = 1 Query: 1 DGRYLLNLAEEVFALAPEEPLEVSDLAGVLQRRAPAYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLNAGEDPMYLARRIVRMANEDIGLADAGAVHAALAAKDVYEFLGSPEGDLALAQAVVHLACAPKSNAVYKAWKGALRTAKDTGSLMPPKHILNAPTKLMKSEGYGKGYEYDHDAEGGVSGQNYFPDEMRERPVFYEPTERGREAALKERLERFRAIRR 684
DGRYLLNLAEE+F+L E+PL ++DLA VLQRRAP YDKDREEHYNLISALHKSVRGSDPDAALYWLARML GEDP++LARRIVRMANEDIGLAD AVHAALAAK+VY+FLGSPEG+LALAQAVVHLACAPKSNAVY A+K A+R+AK TGSLMPPKHILNAPTKLMKSEGYG+GY YDH+ GGVSGQNYFP+ M ER FYEPT+RGREAA+KERLE + +RR
Sbjct: 204 DGRYLLNLAEELFSLKLEKPLGLADLADVLQRRAPVYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLAGGEDPLFLARRIVRMANEDIGLADPTAVHAALAAKEVYDFLGSPEGELALAQAVVHLACAPKSNAVYTAYKAAMRSAKSTGSLMPPKHILNAPTKLMKSEGYGEGYRYDHNEAGGVSGQNYFPEGM-ERERFYEPTDRGREAAIKERLEHWDKLRR 430
BLAST of mRNA_C-australica_Contig_10319.1.1 vs. uniprot
Match: A0A3D5ZV54_9PROT (Replication-associated recombination protein A n=5 Tax=Maricaulaceae TaxID=2800061 RepID=A0A3D5ZV54_9PROT) HSP 1 Score: 359 bits (921), Expect = 9.460e-121 Identity = 178/227 (78.41%), Postives = 196/227 (86.34%), Query Frame = 1 Query: 1 DGRYLLNLAEEVFALAPEEPLEVSDLAGVLQRRAPAYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLNAGEDPMYLARRIVRMANEDIGLADAGAVHAALAAKDVYEFLGSPEGDLALAQAVVHLACAPKSNAVYKAWKGALRTAKDTGSLMPPKHILNAPTKLMKSEGYGKGYEYDHDAEGGVSGQNYFPDEMRERPVFYEPTERGREAALKERLERFRAIR 681
DGRYLLNLAEEV L E PL ++L LQRRAP YDKDREEHYNLISALHKSVRGSDPDAALYWLARML AGEDP++LARRIVRMANEDIGLAD A+HAALAAK+ Y+FLGSPEG+LALAQAVVHLACAPKSNAVY AWK A R A TGSLMPP HILNAPT+LMK +GYGKGYEYDHDA GG+SGQ+Y PD M++RP YEP + GREAA+ ERLER+RA+R
Sbjct: 204 DGRYLLNLAEEVLRLEAETPLSTAELGRFLQRRAPVYDKDREEHYNLISALHKSVRGSDPDAALYWLARMLGAGEDPLFLARRIVRMANEDIGLADPTAIHAALAAKETYDFLGSPEGELALAQAVVHLACAPKSNAVYTAWKAAQRLAGQTGSLMPPAHILNAPTRLMKEQGYGKGYEYDHDAPGGMSGQDYLPDAMKDRPRLYEPKDSGREAAIAERLERWRALR 430 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10319.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10319.1.1 >prot_C-australica_Contig_10319.1.1 ID=prot_C-australica_Contig_10319.1.1|Name=mRNA_C-australica_Contig_10319.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=232bp DGRYLLNLAEEVFALAPEEPLEVSDLAGVLQRRAPAYDKDREEHYNLISAback to top mRNA from alignment at C-australica_Contig_10319:2..697+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10319.1.1 ID=mRNA_C-australica_Contig_10319.1.1|Name=mRNA_C-australica_Contig_10319.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=696bp|location=Sequence derived from alignment at C-australica_Contig_10319:2..697+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10319:2..697+ >mRNA_C-australica_Contig_10319.1.1 ID=mRNA_C-australica_Contig_10319.1.1|Name=mRNA_C-australica_Contig_10319.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=696bp|location=Sequence derived from alignment at C-australica_Contig_10319:2..697+ (Chrysoparadoxa australica CS_1217)back to top |