mRNA_C-australica_Contig_10313.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10313.1.1 vs. uniprot
Match: UPI0014734C1C (DUF4375 domain-containing protein n=1 Tax=Roseovarius confluentis TaxID=1852027 RepID=UPI0014734C1C) HSP 1 Score: 522 bits (1344), Expect = 8.470e-186 Identity = 258/262 (98.47%), Postives = 260/262 (99.24%), Query Frame = 1 Query: 40 MAQENNCPATHSLVYPLDDVLQSAAIALQYDFNDTSGAEFGSEAHLAQTHRNVLGNLAGKSQAERDALILARLDWSTTATVPMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAFPVWDTTARNRYEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFDDYMARRSNAPDDRKLYFMLDELAACVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFNTTGALAPDMIAA 825 MAQE+ CPA HSLVYPLDDVLQSAAIALQYDFNDTSGAEFGSEAHLAQTHRNVLGNLAGKSQAERDALILARLDWSTTATVPMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAFPVWDTTARNRYEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFDDYMARRSNAPDDRKLYFMLDELAACVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFN+TGALAPDMIAA Sbjct: 1 MAQEHTCPAPHSLVYPLDDVLQSAAIALQYDFNDTSGAEFGSEAHLAQTHRNVLGNLAGKSQAERDALILARLDWSTTATVPMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAFPVWDTTARNRYEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFDDYMARRSNAPDDRKLYFMLDELAACVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFNSTGALAPDMIAA 262
BLAST of mRNA_C-australica_Contig_10313.1.1 vs. uniprot
Match: UPI001375887E (DUF4375 domain-containing protein n=1 Tax=Roseibium sediminis TaxID=1775174 RepID=UPI001375887E) HSP 1 Score: 221 bits (563), Expect = 4.160e-67 Identity = 111/254 (43.70%), Postives = 159/254 (62.60%), Query Frame = 1 Query: 58 CPATHSLVYPLDDVLQSAAIALQYDFNDTSGAEFGSEAHLAQTHRNVLGNLAGKSQAERDALILARLDWSTTATVPMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAFPVWDTTARNRYEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFDDYMARRSNAPDDRKLYFMLDELAACVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFNTTGALAPDMI 819 CP + YP+ +L++ + L D + + +E+GS +H+ +T VLG L GKSQAERDAL+L+RL W T + +L L T AGL+ +++E LDR L HA ALRA + AFP W+ R RY QWSDG G IR+ LD L EQS RF SA+P LL+ A L+ D S+DDY A+ + + ++L ++A+CVP + D AL +P +AD +V H++ LE NGGFHQY++N++G AP++I Sbjct: 21 CPEPDKVYYPMTKLLKTEGLLLDSDVSISDISEYGSASHVRKTRETVLGKLDGKSQAERDALLLSRLAWETNGSYALLLLATGPEAGLYEIYIEVLDRAGLVAHADALRAVKAAFPNWNFPPRERYYQWSDGSGTIRNLKLDAELEEQSRRFNSAQPDLLETAQKLIEGDGSYDDYSAKLRAIDEYSRFDYLLWQIASCVPDWESPDEALHALATLPQALADLHVFHLMFLEGGNGGFHQYLYNSSGTFAPELI 274
BLAST of mRNA_C-australica_Contig_10313.1.1 vs. uniprot
Match: A0A841A2D6_9HYPH (DUF4375 domain-containing protein n=2 Tax=Methylorubrum TaxID=2282523 RepID=A0A841A2D6_9HYPH) HSP 1 Score: 108 bits (269), Expect = 6.820e-24 Identity = 82/222 (36.94%), Postives = 110/222 (49.55%), Query Frame = 1 Query: 169 AHLAQTHRNVLGNLAGKSQAERDALILARLD-WSTTATVPMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAF-PVWDTTARNRYEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFDD-YMARRSNAPDDRKLYFMLDELAACVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFNTTGALAPDMIAA 825 A A+ + LA AER L+LA LD W+ AT +D L + L+ LD L HAA LR F P + T RY++WSDG G+IRDA LD AL S RF+ A P LL +AA ++ P Y RS A +D +L F+ L C+ +A L +PP A V+ + E +NG HQ FN++G LAPD++ A Sbjct: 35 AGAAEMRAALARGLATFKPAERSVLVLAALDHWTGGATGLKGFFVLSDSVFLEDA-LQALDAEGLAGHAALLRKGAALFGPGYGGTQARRYDRWSDGHGEIRDAALDAALDRLSERFR-ALPRLLDEAAARIARSPELAALYEPLRSGADEDDRLAFLTGGLWTCLNHYDAPAAVAARLAALPPAHARIIVVRIFEAEMLNGSVHQAFFNSSGVLAPDVVDA 254
BLAST of mRNA_C-australica_Contig_10313.1.1 vs. uniprot
Match: A0A2V3TZ17_9HYPH (Uncharacterized protein DUF4375 n=1 Tax=Methylobacterium sp. B4 TaxID=1938755 RepID=A0A2V3TZ17_9HYPH) HSP 1 Score: 90.9 bits (224), Expect = 2.570e-17 Identity = 80/275 (29.09%), Postives = 113/275 (41.09%), Query Frame = 1 Query: 31 ALAMAQENNCPATHSLVYPLDDVLQSAAIALQYD---FNDTSGAEFGSE------AHLAQTHRNVLGNLAGKSQAERDALILARLDWSTTATVPMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAFPVWDTTARNRYEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFD-DYMARRSNAPDDRKLYFMLDELAACVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFNTTGALAPDMIAA 825 A A +C YPL +++ A+ L+ F D +G + G + A A+ + LAG ER L+LA D T + + LETLD L +HAA +R F T RY +WSDG G+IRD LD AL + RF+ A P L +A + P Y R+ D +L F+ L C+ L +P V + E +NG HQ+ FN++G LAPD+ A Sbjct: 30 ACAPTPTASCDLERLRHYPLAMAVENRALPLRLPDVFFPDPAGRDPGLDRDSLDAAGAAKLRAALERGLAGFRPGERPVLMLAAFDHWTAQGAGLKGFFVLPEGVFLDDVLETLDGAGLSEHAALVREGAALFGPRYGTQAERYARWSDGGGEIRDPALDAALDRLAERFR-ALPRPLDEAVRRVERSPDLAASYETLRAGTDADDRLRFLTGGLWRCLDHYGTPPAVAARLAALPTAHGRIIVTEIFQAEMLNGSVHQFFFNSSGGLAPDVADA 303
BLAST of mRNA_C-australica_Contig_10313.1.1 vs. uniprot
Match: UPI001AE93211 (DUF4375 domain-containing protein n=1 Tax=Rhizobium herbae TaxID=508661 RepID=UPI001AE93211) HSP 1 Score: 84.7 bits (208), Expect = 2.010e-15 Identity = 66/220 (30.00%), Postives = 98/220 (44.55%), Query Frame = 1 Query: 166 EAHLAQTHRNVLGNLAGKSQAERDALILARLDWSTTATVPMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAFPVWDTTARNR-YEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFDD-YMARRSNAPDDRKLYFMLDELAACVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFNTTGALAPDMI 819 E + ++ LA + ER L+L +D T M D ++TL+ L HAA R R A WD +A + S+G G I D ++ L + S R+ +A P L++ AA LSD Y + RS A DD KL F+ L C+ +L +PP I++ + E NG HQ+ +N +GALAPD++ Sbjct: 15 EEEAVKARASLADILAAFAPTERPILMLTAVDRWTDGPEGMRNFFFLDKGVFLGEVIKTLETAGLEAHAALFREGR-ALLDWDHSAPGENHSPLSNGNGDIVDPVVGARLDDLSRRY-NALPSLIEVAAQRLSDSTELSSMYESLRSEASDDLKLEFLASGLMNCLASPERPTNLLHSLAELPPAYTRLIAIYLFVAELENGSMHQFFYNDSGALAPDIV 232
BLAST of mRNA_C-australica_Contig_10313.1.1 vs. uniprot
Match: UPI00135A1FED (DUF4375 domain-containing protein n=1 Tax=Rhodobacter flagellatus TaxID=2593021 RepID=UPI00135A1FED) HSP 1 Score: 67.8 bits (164), Expect = 2.070e-9 Identity = 49/182 (26.92%), Postives = 77/182 (42.31%), Query Frame = 1 Query: 283 PMLTLTTTDHAGLFNVFLETLDRHDLHDHAAALRATRDAFPVWDTTARNRYEQWSDGRGQIRDALLDKALREQSHRFKSARPGLLQKAAVLLSDDPSFD-DYMARRSNAPDDRKLYFMLDELAA-CVPVGNAFDPDPDALTRVPPTIADFYVIHMLMLESMNGGFHQYIFNTTGALAPDMIA 822 P+ +LT + + + + +RH L A LR +P WD R R + L ALR S + P +L L++ DP ++ ARR A R++ + L C+ D A + P AD ++H + ES NG HQY +N++G +AP + A Sbjct: 69 PLYSLTYLEPSTVLPEIVAAAERHGLSAEARYLRTPLTLWPDWDAGPAERMAD----RAVLDGGLRGLALRAASTALHGSEPRILAATEALIASDPGLAAEFEARRQGADRHRRVDHLAWRLITECLAGWWTPDEADAAFAEMGPAQADILLMHFFLAESFNGSAHQYFYNSSGTMAPQLAA 246 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10313.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10313.1.1 >prot_C-australica_Contig_10313.1.1 ID=prot_C-australica_Contig_10313.1.1|Name=mRNA_C-australica_Contig_10313.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=275bp LVIIAFLSIPALAMAQENNCPATHSLVYPLDDVLQSAAIALQYDFNDTSGback to top mRNA from alignment at C-australica_Contig_10313:3..827+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10313.1.1 ID=mRNA_C-australica_Contig_10313.1.1|Name=mRNA_C-australica_Contig_10313.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=825bp|location=Sequence derived from alignment at C-australica_Contig_10313:3..827+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10313:3..827+ >mRNA_C-australica_Contig_10313.1.1 ID=mRNA_C-australica_Contig_10313.1.1|Name=mRNA_C-australica_Contig_10313.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=825bp|location=Sequence derived from alignment at C-australica_Contig_10313:3..827+ (Chrysoparadoxa australica CS_1217)back to top |