mRNA_C-australica_Contig_1031.3.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1031.3.1 vs. uniprot
Match: A0A7S1XLN8_9STRA (Kinetochore protein SPC25 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLN8_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 2.610e-16 Identity = 46/99 (46.46%), Postives = 61/99 (61.62%), Query Frame = 3 Query: 546 LTRGVIFYKALGLEFQRLDNGGDGAFLRMIFTQIDPSDAERAYSFSLCVDTSDRYHVSESQPALPAAAISRMLSKLNHDNDLSYFVRGMRRQFCSMAAA 842
LTRGV+ YK LGL+F+R + LR+IFTQ+DP + R +SF + VD + YHVSE P LPA I ML+ LN N+ FV G+RR + + A
Sbjct: 22 LTRGVLLYKRLGLDFERAHDDR----LRLIFTQLDPREPLRPFSFCVHVDDNSTYHVSECSPPLPADVIDPMLAALNAQNNFGAFVCGLRRHWRAQVNA 116
BLAST of mRNA_C-australica_Contig_1031.3.1 vs. uniprot
Match: W7TNF4_9STRA (Kinetochore protein SPC25 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNF4_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 3.400e-16 Identity = 48/114 (42.11%), Postives = 69/114 (60.53%), Query Frame = 3 Query: 483 LESKRVEASNRHQLKEEELLSLTRGVIFYKALGLEFQRLDNGGDGAFLRMIFTQIDPSDAERAYSFSLCVDTSDRYHVSESQPALPAAAISRMLSKLNHDNDLSYFVRGMRRQF 824
L SKR S + + + LTRGV+ YK LGL+F+R D+ LR+IFTQ+D ++ R Y FS+ +D +DRY V E P L A + ++++LN ND + FV+ MRR F
Sbjct: 130 LASKRAALSELSSRQGDYINDLTRGVVMYKHLGLDFERADDNK----LRLIFTQLDATNPSREYFFSVHIDEADRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAF 239
BLAST of mRNA_C-australica_Contig_1031.3.1 vs. uniprot
Match: A0A7S1G7N0_9STRA (Kinetochore protein SPC25 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G7N0_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 3.330e-14 Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 3 Query: 546 LTRGVIFYKALGLEFQRLDNGGDGAFLRMIFTQIDPSDAERAYSFSLCVDTSDRYHVSESQPALPAAAISRMLSKLNHDNDLSYFVRGMRRQFCSMAA 839
LT+GV FYK LGL+F L G D LR+ FTQIDP+ +R ++F++ V + Y V + P P A + M +LN ND S+FVR MRR+FC++ A
Sbjct: 107 LTKGVAFYKRLGLDFDGL--GED--VLRLTFTQIDPAAPDREFTFTVNVTDDNVYVVRDVSP--PVAGVEEMCEELNETNDFSFFVRRMRREFCALVA 198
BLAST of mRNA_C-australica_Contig_1031.3.1 vs. uniprot
Match: A0A7S2C3P1_9STRA (Kinetochore protein SPC25 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3P1_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.280e-13 Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 3 Query: 477 VELESKRVEASNRHQLKEEELLSLTRGVIFYKALGLEFQRLDNGGDGAFLRMIFTQIDPSDAERAYSFSLCVDTSDRYHVSESQPALPAAAISRMLSKLNHDNDLSYFVRGMRRQFCSMA 836
VE E RV+A ++KE LTRGV+ YK LGLEF+R + +L + FTQIDP+D R + F + V + D Y V P + A + +++++N ND FVR MR+ F +A
Sbjct: 53 VEAERARVDAEAGRKMKE-----LTRGVLMYKCLGLEFERANED----WLCVRFTQIDPADHNREFIFWISVGSDDSYQVQGCTPEINAGRLGGLVAEVNQTNDFGRFVRQMRKAFKELA 163
BLAST of mRNA_C-australica_Contig_1031.3.1 vs. uniprot
Match: A0A482REE4_9ARCH (Spindle_Spc25 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482REE4_9ARCH) HSP 1 Score: 70.9 bits (172), Expect = 4.230e-11 Identity = 42/119 (35.29%), Postives = 74/119 (62.18%), Query Frame = 3 Query: 486 ESKRVEASNRHQLKEEELLSLTRGVIFYKALGLEFQRLDNGGDGAFLRMIFTQIDPSDAERAYSFSLCVDTSDRYHVSESQPALPAAAISRMLSKLNHDNDLSYFVRGMRRQFCSMAAA 842
E +R E+ R Q++E LT+GV +YK LGL FQ +++ +R++FT IDP+ ++ + F + + +++ + V E QP P + +S ++++LN N+ S FV+ MR++F AAA
Sbjct: 14 EYERRESEVRFQMQE-----LTKGVSYYKRLGLTFQTIEHDR----VRLVFTLIDPTAVDKPFFFDIRLASNEAFEVLEVQP--PVSGLSALVAELNETNNFSRFVQLMRQKFVETAAA 121
BLAST of mRNA_C-australica_Contig_1031.3.1 vs. uniprot
Match: A0A484DWY7_BRELC (Kinetochore protein SPC25 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DWY7_BRELC) HSP 1 Score: 72.0 bits (175), Expect = 4.000e-10 Identity = 62/224 (27.68%), Postives = 113/224 (50.45%), Query Frame = 3 Query: 162 TGRLREILQKTQTELDVWTKEQYCVLDGIGDAHYRQMQECARTVVAIRHNEADVQRQAQAGEELERSHAKKLEEMRLQVEELLAKAHGPLPRLLKDLKERKEEHIVELESKRVEASNRHQLKEEELLSLTRGVIFYKALGLEFQRLDNGGDGAFLRMI--FTQIDPSDAERAYSFSLCVDT-SDRYHVSESQPALPAAAISRMLSKLNHDNDLSYFVRGMRRQF 824
T L ++ ++EL+ W + Q ++ A +Q QE AR + +Q + Q + ++L ++++E L A+ P ++K L ER + V L+ ++ + +E +L L G+ Y+ LGL F+ + R+I FTQIDP D+ R +SF + +D +D+Y + +P+ +S+++++LN DL+ F+R MRRQF
Sbjct: 16 TEALVQLNLSARSELEAWAESQKTLILDDKRADQQQSQEHARASDEAQRKREMLQIEHQKLSADTHAKERELNSCQMEIEVLQAEKRRREP-VVKHLFERTVKEDVNLKQLVEDSQKQRATQEYQLQELKVGLAMYQRLGLFFEPAEEN------RIIVKFTQIDPQDSNRVFSFRITIDPITDKYIIDSCSEVVPS--LSQLVTELNESGDLARFIRSMRRQF 230
BLAST of mRNA_C-australica_Contig_1031.3.1 vs. uniprot
Match: B7FVW8_PHATC (Kinetochore protein SPC25 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVW8_PHATC) HSP 1 Score: 70.1 bits (170), Expect = 7.580e-10 Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 3 Query: 495 RVEASNRHQLKEEELLSLTRGVIFYKALGLEFQRLDNGGDGAFLRMIFTQIDPSDAERAYSFSLCVD-TSDRYHVSESQPALPAAAISRMLSKLNHDNDLSYFVRGMRRQF 824
RV+AS + L++ LT+G++ Y+ LG++FQ+ + ++ FTQ+DP+ +R +SF L VD D+Y V P +P ++ +LS LN D+D+ FV GMR F
Sbjct: 143 RVQASKQTTLED-----LTKGIVNYQYLGIDFQKAQDN----HMKFYFTQLDPTQPKRQFSFLLQVDDVDDQYIVDVCDPPIPEHILNELLSDLNADDDMLPFVIGMRHAF 244
BLAST of mRNA_C-australica_Contig_1031.3.1 vs. uniprot
Match: A0A1Z5KGE6_FISSO (Kinetochore protein SPC25 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGE6_FISSO) HSP 1 Score: 65.9 bits (159), Expect = 2.200e-8 Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 3 Query: 525 KEEELLSLTRGVIFYKALGLEFQRLDNGGDGAFLRMIFTQIDPSDAERAYSFSLCVDTSDRYHVSESQPALPAAAISRMLSKLNHDNDLSYFVRGMRRQFCSMAAAEGVSP 857
KE + LTRG+I YK LGL+F+R+ N LR FTQ+DPS+ R + F + V D + +P + + +++ N + D+ FV GMRR F + A + +P
Sbjct: 140 KETTIDDLTRGIINYKYLGLDFERVPNDK----LRFCFTQLDPSNPSRKFWFEMDVTELD-CSIPNCEPPIRSETREQLVQAFNKNEDMQEFVLGMRRAFLEVLAGQVHTP 245
BLAST of mRNA_C-australica_Contig_1031.3.1 vs. uniprot
Match: A0A0D2WKP7_CAPO3 (Kinetochore protein SPC25 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WKP7_CAPO3) HSP 1 Score: 63.9 bits (154), Expect = 6.740e-8 Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 3 Query: 546 LTRGVIFY-KALGLEFQRLDNGGDGAFLRMIFTQIDPSDAERAYSFSLCVDTSDRYHVSESQPALPAAAISRMLSKLNHDNDLSYFVRGMRRQFCSM 833
LTRGV F+ + LGL+ QR L+ IF IDP + R +SFS+ +D + YHV +P + A M+++LN DN LS F++ +R++F +M
Sbjct: 137 LTRGVQFFSERLGLKIQRTGKH----HLQFIFRYIDPYNVNREFSFSVRIDEKNMYHVDVCEPMVEDLA--GMVAQLNDDNQLSVFIKNIRKKFKAM 227
BLAST of mRNA_C-australica_Contig_1031.3.1 vs. uniprot
Match: C1E1X1_MICCC (Kinetochore protein SPC25 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E1X1_MICCC) HSP 1 Score: 63.9 bits (154), Expect = 1.430e-7 Identity = 65/231 (28.14%), Postives = 111/231 (48.05%), Query Frame = 3 Query: 171 LREILQKTQTELDVWTKEQYCVLDGIGDAHYRQMQECARTVVAIRHNEADVQRQAQAGEELERSHAKKLEEM-RLQVEELLAKAHGP-LPRLLKDLKERKEEHIVELESKRVEASNRHQLKEEELLSLTRGVIFYKA-LGLEFQRLDNGGDGAFLRMIFTQIDPSDAERAYSFSLCVDTSDRYHVSESQPALPAAAISRMLSKLNHDNDLSYFVRGMRRQFCSMAAAEGVS 854
L + L++ ++ +++W + + H M V++ E D+ A A EEL R + E+ LQ E AK G LP+ L+ L+E+ ELE + + + +K + L + V Y+ LGL F+ GD LR + +DP+D ER + ++ V + Y + + P + AA R+L++ N ++LS FVRG+R+ F + A E V+
Sbjct: 26 LHKELEQARSNVEMWMARRELSMKEQVAVHKTNMAVAEEEYVSLVEREKDL---ATAAEELARRQEYQQAELDALQEEAAQAKELGEDLPQQLQVLREQVTTEKDELERESTKVTGDEMVKAQMLQAHLSAVDLYRTRLGLRFEI----GDAEELRFFYRHVDPADHEREFMVAVRVVDAGGYELMDCDPDMGDAA-QRLLAECNRTDNLSGFVRGVRKLFRASVAEEEVA 248 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1031.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1031.3.1 >prot_C-australica_Contig_1031.3.1 ID=prot_C-australica_Contig_1031.3.1|Name=mRNA_C-australica_Contig_1031.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=253bp MLASYGREGAPSSHADLTGRLREILQKTQTELDVWTKEQYCVLDGIGDAHback to top mRNA from alignment at C-australica_Contig_1031:4380..7210+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1031.3.1 ID=mRNA_C-australica_Contig_1031.3.1|Name=mRNA_C-australica_Contig_1031.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2831bp|location=Sequence derived from alignment at C-australica_Contig_1031:4380..7210+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1031:4380..7210+ >mRNA_C-australica_Contig_1031.3.1 ID=mRNA_C-australica_Contig_1031.3.1|Name=mRNA_C-australica_Contig_1031.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=759bp|location=Sequence derived from alignment at C-australica_Contig_1031:4380..7210+ (Chrysoparadoxa australica CS_1217)back to top |