mRNA_C-australica_Contig_10306.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10306.1.1 vs. uniprot
Match: A3UGF2_9PROT (Trk system potassium uptake protein n=3 Tax=Oceanicaulis TaxID=153232 RepID=A3UGF2_9PROT) HSP 1 Score: 506 bits (1304), Expect = 2.120e-177 Identity = 253/276 (91.67%), Postives = 266/276 (96.38%), Query Frame = 1 Query: 1 LDISWTDALFEATSGITTTGATVLTGLQDMPAGILLWRSILQWIGGVGIIVTAMAIWPLLGIGGMQLFRLESSDNSEKALPRAGQIAAAVGLVYLVLTFLCFLAYLGADMTPFQAINHAMTTVATGGFSTHDGSIGAFVDGGADLVALVFMVLAALPFVLFLRAAQGRPDLLVFDPQARAFLMVALTASILLTLWLVVHDPHDHGHLPAWRIAAVNGVSVLTGTGYASVDFWLWGGGAAGIFFVLMFIGGCAGSTTCSVKIFRYQIAASAMNAYIA 828 LDISWTDALFEATSGITTTGATVLTGLQD+PAGILLWRSILQWIGGVGIIVTAMAIWPLLGIGGMQLFRLESSD SEKALPRAGQIAAAVG++YLVLTFLCFLAYLGA+MTPF+AINHAMTTVATGGFSTHD SIGAF +GGAD+VALVFMVLA LPFVLFLRAAQGRPDLL+FDPQARAFLMVA TA++LLT WLV+HDPHDH HLPAWR+AAVN VSVLTGTGYA DFWLWGGGAAGIFFVLMFIGGCAGST+CSVKIFRYQIAASAMNAYIA Sbjct: 95 LDISWTDALFEATSGITTTGATVLTGLQDLPAGILLWRSILQWIGGVGIIVTAMAIWPLLGIGGMQLFRLESSDKSEKALPRAGQIAAAVGVIYLVLTFLCFLAYLGAEMTPFEAINHAMTTVATGGFSTHDSSIGAFSEGGADIVALVFMVLAGLPFVLFLRAAQGRPDLLIFDPQARAFLMVAFTATVLLTAWLVIHDPHDHTHLPAWRLAAVNSVSVLTGTGYAVTDFWLWGGGAAGIFFVLMFIGGCAGSTSCSVKIFRYQIAASAMNAYIA 370
BLAST of mRNA_C-australica_Contig_10306.1.1 vs. uniprot
Match: A0A4V3RZF4_9PROT (Trk system potassium uptake protein n=1 Tax=Marinicauda pacifica TaxID=1133559 RepID=A0A4V3RZF4_9PROT) HSP 1 Score: 434 bits (1115), Expect = 1.060e-148 Identity = 211/274 (77.01%), Postives = 242/274 (88.32%), Query Frame = 1 Query: 4 DISWTDALFEATSGITTTGATVLTGLQDMPAGILLWRSILQWIGGVGIIVTAMAIWPLLGIGGMQLFRLESSDNSEKALPRAGQIAAAVGLVYLVLTFLCFLAYLGADMTPFQAINHAMTTVATGGFSTHDGSIGAFVDGGADLVALVFMVLAALPFVLFLRAAQGRPDLLVFDPQARAFLMVALTASILLTLWLVVHDPHDHGHLPAWRIAAVNGVSVLTGTGYASVDFWLWGGGAAGIFFVLMFIGGCAGSTTCSVKIFRYQIAASAMNAYI 825 D+SWTDALFEATSG+TTTGATV+T LQD PAG+L+WRSILQWIGG+GIIVTAMAIWP+LGIGGMQLFRLE+SD S+KALPRAGQIAAAVG++YLVLTF+CFLAY+ DMTPF A HAMTTVATGGFSTHDGSIGAF DGG+D+VALVFM+L+ALPFVL+LRA QGRPD L DPQ R FL VA A +LT+W++VH+P G LPAWR+A+VN +S++TGTGYA+ DF LWGGGA GIFF LMFIGGCAGSTTCSVKIFRYQIAA A+ +I Sbjct: 96 DMSWTDALFEATSGMTTTGATVMTNLQDQPAGVLIWRSILQWIGGIGIIVTAMAIWPMLGIGGMQLFRLENSDKSDKALPRAGQIAAAVGIIYLVLTFICFLAYIATDMTPFDAAAHAMTTVATGGFSTHDGSIGAFTDGGSDIVALVFMILSALPFVLYLRAVQGRPDRLWVDPQVRGFLAVAGAAIAVLTVWILVHEPPASGQLPAWRLASVNAISIMTGTGYATADFSLWGGGAVGIFFCLMFIGGCAGSTTCSVKIFRYQIAAGAIGRHI 369
BLAST of mRNA_C-australica_Contig_10306.1.1 vs. uniprot
Match: A0A4V3RXW4_9PROT (Trk system potassium uptake protein n=1 Tax=Marinicauda algicola TaxID=2029849 RepID=A0A4V3RXW4_9PROT) HSP 1 Score: 427 bits (1098), Expect = 4.000e-146 Identity = 214/269 (79.55%), Postives = 235/269 (87.36%), Query Frame = 1 Query: 7 ISWTDALFEATSGITTTGATVLTGLQDMPAGILLWRSILQWIGGVGIIVTAMAIWPLLGIGGMQLFRLESSDNSEKALPRAGQIAAAVGLVYLVLTFLCFLAYLGADMTPFQAINHAMTTVATGGFSTHDGSIGAFVDGGADLVALVFMVLAALPFVLFLRAAQGRPDLLVFDPQARAFLMVALTASILLTLWLVVHDPHDHGHLPAWRIAAVNGVSVLTGTGYASVDFWLWGGGAAGIFFVLMFIGGCAGSTTCSVKIFRYQIAASAM 813 +SWTDALFE+TSG+TTTGATV+TGLQD PAG+L+WRSILQWIGG+GIIVTAMAIWPLLGIGGMQLFRLESSD SEKALPRAGQIAAAVG++YLVLTF+CFLAY+ DMTPF A HAMTTVATGGFSTHDGSIGAF GG+DLVALVFM+LAALPFVLFLRAAQGRPD L DPQ R F+ V L AS LT WL + DP LPAWR+AAVN VSVLTGTGYAS DF LWGG A +FFVLMFIGGCAGSTTCSVK+FRY+IA +A+ Sbjct: 97 MSWTDALFESTSGLTTTGATVMTGLQDQPAGVLIWRSILQWIGGIGIIVTAMAIWPLLGIGGMQLFRLESSDTSEKALPRAGQIAAAVGVIYLVLTFICFLAYIATDMTPFDAAAHAMTTVATGGFSTHDGSIGAFAAGGSDLVALVFMILAALPFVLFLRAAQGRPDYLWTDPQVRGFIGVVLAASAFLTAWLFLTDPPLGQDLPAWRLAAVNAVSVLTGTGYASADFGLWGGAAVAVFFVLMFIGGCAGSTTCSVKLFRYEIAGAAL 365
BLAST of mRNA_C-australica_Contig_10306.1.1 vs. uniprot
Match: A0A2U2BXU1_9PROT (Trk system potassium uptake protein n=1 Tax=Marinicauda salina TaxID=2135793 RepID=A0A2U2BXU1_9PROT) HSP 1 Score: 418 bits (1075), Expect = 1.190e-142 Identity = 215/273 (78.75%), Postives = 240/273 (87.91%), Query Frame = 1 Query: 7 ISWTDALFEATSGITTTGATVLTGLQDMPAGILLWRSILQWIGGVGIIVTAMAIWPLLGIGGMQLFRLESSDNSEKALPRAGQIAAAVGLVYLVLTFLCFLAYLGADMTPFQAINHAMTTVATGGFSTHDGSIGAFVDGGADLVALVFMVLAALPFVLFLRAAQGRPDLLVFDPQARAFLMVALTASILLTLWLVVHDPHDHGHLPAWRIAAVNGVSVLTGTGYASVDFWLWGGGAAGIFFVLMFIGGCAGSTTCSVKIFRYQIAASAMNAYI 825 +SWTDA+FEATSGITTTGATV+TGLQD PAGILLWR+ILQWIGGVGIIVTAMAIWPLLG+GGMQLFRLESS+ +EKALPRAGQIAA VG+ YLVL+F CFLAYL ADMTPF A+ HAMTTVATGGFSTHDGSIGAF GGADLVALVFM+L+ALPF+L+LRAA GRPD+L D QARAFL VAL A+ LT WLV ++ + A R+AAVNGVS+LTGTGYAS D+ LWGGGAA IFF LMF+GGCAGSTTCSVKIFRYQIAA+A+ AYI Sbjct: 97 LSWTDAIFEATSGITTTGATVMTGLQDQPAGILLWRAILQWIGGVGIIVTAMAIWPLLGVGGMQLFRLESSEKTEKALPRAGQIAATVGVAYLVLSFACFLAYLAADMTPFDAVAHAMTTVATGGFSTHDGSIGAFAAGGADLVALVFMILSALPFLLYLRAATGRPDMLFTDSQARAFLGVALVAAASLTGWLVFNEVEPNAG-SALRMAAVNGVSILTGTGYASADYNLWGGGAAAIFFTLMFVGGCAGSTTCSVKIFRYQIAAAALRAYI 368
BLAST of mRNA_C-australica_Contig_10306.1.1 vs. uniprot
Match: A0A550K1Z9_9PROT (Trk system potassium uptake protein n=1 Tax=Glycocaulis profundi TaxID=2518983 RepID=A0A550K1Z9_9PROT) HSP 1 Score: 412 bits (1058), Expect = 4.490e-140 Identity = 201/275 (73.09%), Postives = 241/275 (87.64%), Query Frame = 1 Query: 1 LDISWTDALFEATSGITTTGATVLTGLQDMPAGILLWRSILQWIGGVGIIVTAMAIWPLLGIGGMQLFRLESSDNSEKALPRAGQIAAAVGLVYLVLTFLCFLAYLGADMTPFQAINHAMTTVATGGFSTHDGSIGAFVDGGADLVALVFMVLAALPFVLFLRAAQGRPDLLVFDPQARAFLMVALTASILLTLWLVVHDPHDHGHLPAWRIAAVNGVSVLTGTGYASVDFWLWGGGAAGIFFVLMFIGGCAGSTTCSVKIFRYQIAASAMNAYI 825 L+I+WTDALFE SG+TTTGATVLTGLQD+PAGIL+WR+ILQWIGG+GIIVTAMAIWP+LGIGGMQLFRLESS+ SEKALPRAGQIA A+GL+YL LTF+C LAY+ + M+ F AI HAMTTVATGGFSTHD S+GAF+DGG+D+VALVFMVL+ALPF+++LR QGRPD ++FDPQ R FL +A TAS +LT+WLV+ DP +PAWR AAVN VSV+TGTGYA+ DF LWGGGA IFF LMF+GGCAGS++CSVK+FRYQIAA+A+ +Y+ Sbjct: 95 LEITWTDALFETVSGLTTTGATVLTGLQDLPAGILIWRAILQWIGGIGIIVTAMAIWPMLGIGGMQLFRLESSEKSEKALPRAGQIAGALGLIYLALTFMCHLAYMASGMSAFDAICHAMTTVATGGFSTHDASLGAFIDGGSDVVALVFMVLSALPFLVYLRMLQGRPDRILFDPQVRTFLGIAFTASAILTVWLVL-DPPQQTAIPAWRDAAVNAVSVMTGTGYATTDFSLWGGGAVAIFFALMFVGGCAGSSSCSVKVFRYQIAAAALVSYL 368
BLAST of mRNA_C-australica_Contig_10306.1.1 vs. uniprot
Match: A0A5M6ZMW6_9PROT (Trk system potassium uptake protein n=1 Tax=Alkalicaulis satelles TaxID=2609175 RepID=A0A5M6ZMW6_9PROT) HSP 1 Score: 390 bits (1001), Expect = 2.070e-131 Identity = 197/276 (71.38%), Postives = 227/276 (82.25%), Query Frame = 1 Query: 1 LDISWTDALFEATSGITTTGATVLTGLQDMPAGILLWRSILQWIGGVGIIVTAMAIWPLLGIGGMQLFRLESSDNSEKALPRAGQIAAAVGLVYLVLTFLCFLAYLGADMTPFQAINHAMTTVATGGFSTHDGSIGAFVDGGADLVALVFMVLAALPFVLFLRAAQGRPDLLVFDPQARAFLMVALTASILLTLWLVVHDPHDHGHL-PAWRIAAVNGVSVLTGTGYASVDFWLWGGGAAGIFFVLMFIGGCAGSTTCSVKIFRYQIAASAMNAYI 825 ++ISWTDA+FE TSG+TTTGATVLTGL D+P G+LLWRSILQWIGG+GIIVTAMAIWP+LGIGGMQLFRLE+S+ SEK LPRAGQIA AV L+YL LTF CFLAYLGA + F A+NHAMTT+ATGGFST D S+ AF ADLVA +FMVLA LPFVL++RAAQGRPDLL+ D QAR FLMV + LLTL + + H PAWR+A VN +S+LTGTGYAS DFW WGG +A +FF+LMFIGGCAGSTTCSVKIFRYQIA SA+ +YI Sbjct: 95 MEISWTDAIFETTSGLTTTGATVLTGLDDLPRGLLLWRSILQWIGGIGIIVTAMAIWPMLGIGGMQLFRLENSEKSEKVLPRAGQIALAVLLIYLALTFACFLAYLGAGLGAFDAVNHAMTTIATGGFSTRDASLSAFAGTNADLVAALFMVLAGLPFVLYVRAAQGRPDLLLTDVQARGFLMVIAAFAALLTLIITLSPEIAHDSAKPAWRLALVNVISILTGTGYASADFWAWGGASAAVFFMLMFIGGCAGSTTCSVKIFRYQIAFSALTSYI 370
BLAST of mRNA_C-australica_Contig_10306.1.1 vs. uniprot
Match: A0A0P7VFL7_9PROT (Trk system potassium uptake protein n=3 Tax=Maricaulaceae TaxID=2800061 RepID=A0A0P7VFL7_9PROT) HSP 1 Score: 387 bits (994), Expect = 2.230e-130 Identity = 196/275 (71.27%), Postives = 230/275 (83.64%), Query Frame = 1 Query: 1 LDISWTDALFEATSGITTTGATVLTGLQDMPAGILLWRSILQWIGGVGIIVTAMAIWPLLGIGGMQLFRLESSDNSEKALPRAGQIAAAVGLVYLVLTFLCFLAYLGADMTPFQAINHAMTTVATGGFSTHDGSIGAFVDGGADLVALVFMVLAALPFVLFLRAAQGRPDLLVFDPQARAFLMVALTASILLTLWLVVHDPHDHGHLPAWRIAAVNGVSVLTGTGYASVDFWLWGGGAAGIFFVLMFIGGCAGSTTCSVKIFRYQIAASAMNAYI 825 + +SWTDA+FE+ SGITTTGATVLTGLQD+PAG+L+WR+ILQWIGG+GIIVTAMAIWP+LGIGGMQLFRLESSD ++KALPRAG+IA AVGL+YLVLTF CF+AY A M A HAMTTVATGGFSTHDGSIGA+ D GADLVALVFM+L+ALPF++FLRA QGRPD ++ DPQ RAFL+ A A LTL L+V+ G LPAWR+AAVN VSV+TGTGY S DF WG +FF+LMF+GGCAGS+TCS+KIFR+QIAASAM Y+ Sbjct: 95 IGMSWTDAIFESVSGITTTGATVLTGLQDLPAGVLIWRAILQWIGGIGIIVTAMAIWPVLGIGGMQLFRLESSDKTDKALPRAGEIAGAVGLIYLVLTFTCFIAYGFAGMNALDAAAHAMTTVATGGFSTHDGSIGAWADQGADLVALVFMLLSALPFLVFLRAVQGRPDRIITDPQVRAFLVTAFVACAALTLLLIVNGVDTEG-LPAWRVAAVNAVSVMTGTGYGSADFAGWGTMPVMVFFLLMFVGGCAGSSTCSIKIFRHQIAASAMLTYL 368
BLAST of mRNA_C-australica_Contig_10306.1.1 vs. uniprot
Match: UPI000363E0F4 (TrkH family potassium uptake protein n=1 Tax=Woodsholea maritima TaxID=240237 RepID=UPI000363E0F4) HSP 1 Score: 362 bits (929), Expect = 1.520e-120 Identity = 194/274 (70.80%), Postives = 215/274 (78.47%), Query Frame = 1 Query: 7 ISWTDALFEATSGITTTGATVLTGLQDMPAGILLWRSILQWIGGVGIIVTAMAIWPLLGIGGMQLFRLESSDNSEKALPRAGQIAAAVGLVYLVLTFLCFLAYLGADMTPFQAINHAMTTVATGGFSTHDGSIGAFVDGGADLVALVFMVLAALPFVLFLRAAQGRPDLLVFDPQARAFLMVALTASILLTLWLVVHDP-HDHGHLPAWRIAAVNGVSVLTGTGYASVDFWLWGGGAAGIFFVLMFIGGCAGSTTCSVKIFRYQIAASAMNAYI 825 +SWTDALFEATSGITTTGATV+TGLQ PAGILLWR ILQWIGG+GIIVTAMAI+P LGIGGMQLFR+ESSD S+KALP+AGQIAA+V LVYL L+ LC Y A M P AI H MTTVATGGFSTHDGSIGAF D GADL+ALVFM+ A LPF+L+LRA QGRP L D QARAF +VA A ++LWL D D G AWR+A+VN VSVLTGTG+AS DF WGG MF+GGCAGSTTCSVKIFRYQIAASA+ AYI Sbjct: 97 LSWTDALFEATSGITTTGATVMTGLQTQPAGILLWRGILQWIGGIGIIVTAMAIFPFLGIGGMQLFRMESSDQSDKALPKAGQIAASVALVYLGLSVLCMFTYSVAGMKPLDAIIHGMTTVATGGFSTHDGSIGAFADQGADLIALVFMIAAGLPFLLYLRALQGRPLDLFKDSQARAFCLVAFGACAFMSLWLATQDILPDPGS--AWRVASVNVVSVLTGTGFASADFATWGGXXXXXXXXXMFVGGCAGSTTCSVKIFRYQIAASALRAYI 368
BLAST of mRNA_C-australica_Contig_10306.1.1 vs. uniprot
Match: UPI001F2576BA (TrkH family potassium uptake protein n=1 Tax=Hyphobacterium sp. SN044 TaxID=2912575 RepID=UPI001F2576BA) HSP 1 Score: 338 bits (867), Expect = 3.560e-111 Identity = 173/275 (62.91%), Postives = 211/275 (76.73%), Query Frame = 1 Query: 1 LDISWTDALFEATSGITTTGATVLTGLQDMPAGILLWRSILQWIGGVGIIVTAMAIWPLLGIGGMQLFRLESSDNSEKALPRAGQIAAAVGLVYLVLTFLCFLAYLGADMTPFQAINHAMTTVATGGFSTHDGSIGAFVDGGADLVALVFMVLAALPFVLFLRAAQGRPDLLVFDPQARAFLMVALTASILLTLWLVVHDPHDHGHLPAWRIAAVNGVSVLTGTGYASVDFWLWGGGAAGIFFVLMFIGGCAGSTTCSVKIFRYQIAASAMNAYI 825 + + WTDA+FE+ SG+TTTGATV+TGL P G+L+WR+ILQWIGG+GIIVTAMA+WPLLG+GGMQLFRLESSDNSEK LPRA QIAAA+ +YL LT +C L Y ++ F +I HAMTT+ATGGFST D SIGAF+D G DLVALVFM++AALPFV +L A +GRP L DPQ R FL + + A+++LT+ L+ H G+ +WR AAVN VSV+TGTGYA+ DF WG A F LMF GGCAGSTTCSVKIFRYQIA A+ ++ Sbjct: 96 IGLDWTDAIFESMSGLTTTGATVITGLDTQPRGLLMWRAILQWIGGIGIIVTAMAVWPLLGVGGMQLFRLESSDNSEKILPRAAQIAAAIAALYLGLTVICALCYSAVGLSAFDSIAHAMTTIATGGFSTRDASIGAFLDQGGDLVALVFMIVAALPFVAWLVALRGRPSALWNDPQVRGFLTLVVVATLVLTVLLMATGVH--GNESSWRFAAVNTVSVITGTGYATADFNAWGPIAQASLFALMFAGGCAGSTTCSVKIFRYQIAILAIRRHL 368
BLAST of mRNA_C-australica_Contig_10306.1.1 vs. uniprot
Match: A0A3C2E2Q9_9PROT (Trk system potassium uptake protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A3C2E2Q9_9PROT) HSP 1 Score: 335 bits (859), Expect = 5.740e-110 Identity = 172/273 (63.00%), Postives = 209/273 (76.56%), Query Frame = 1 Query: 7 ISWTDALFEATSGITTTGATVLTGLQDMPAGILLWRSILQWIGGVGIIVTAMAIWPLLGIGGMQLFRLESSDNSEKALPRAGQIAAAVGLVYLVLTFLCFLAYLGADMTPFQAINHAMTTVATGGFSTHDGSIGAFVDGGADLVALVFMVLAALPFVLFLRAAQGRPDLLVFDPQARAFLMVALTASILLTLWLVVHDPHDHGHLPAWRIAAVNGVSVLTGTGYASVDFWLWGGGAAGIFFVLMFIGGCAGSTTCSVKIFRYQIAASAMNAYI 825 + WTDA+FE+ SG+TTTGATV+TGL P G+L+WR+ILQWIGG+GIIVTAMA+WPLLG+GGMQLFRLESSD SEK LPRA QIAAA+ +Y LT C L+Y ++ F AI HAMTT+ATGG+ST D SIGAF+D G DLVALVFM+ +ALPFV +L A +GRP +L DPQ R F MV +TA+ +LT+ L++ H G+ AWR AAVN VSV+TGTG+A+ DF WG A F LMF GGCAGSTTCSVKIFRYQIA A+ ++ Sbjct: 98 LDWTDAIFESMSGLTTTGATVITGLDSQPRGLLMWRAILQWIGGIGIIVTAMAVWPLLGVGGMQLFRLESSDTSEKILPRAAQIAAAIAALYFGLTVACALSYSAVGLSTFDAIAHAMTTIATGGYSTRDASIGAFLDQGGDLVALVFMLASALPFVAYLVALRGRPSVLWNDPQVRGFAMVVVTATAVLTVLLMLTQVH--GNESAWRFAAVNTVSVITGTGFATADFNAWGPIAQASMFALMFAGGCAGSTTCSVKIFRYQIALLAIRRHL 368 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10306.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10306.1.1 >prot_C-australica_Contig_10306.1.1 ID=prot_C-australica_Contig_10306.1.1|Name=mRNA_C-australica_Contig_10306.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=276bp LDISWTDALFEATSGITTTGATVLTGLQDMPAGILLWRSILQWIGGVGIIback to top mRNA from alignment at C-australica_Contig_10306:1..828- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10306.1.1 ID=mRNA_C-australica_Contig_10306.1.1|Name=mRNA_C-australica_Contig_10306.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=828bp|location=Sequence derived from alignment at C-australica_Contig_10306:1..828- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10306:1..828- >mRNA_C-australica_Contig_10306.1.1 ID=mRNA_C-australica_Contig_10306.1.1|Name=mRNA_C-australica_Contig_10306.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=828bp|location=Sequence derived from alignment at C-australica_Contig_10306:1..828- (Chrysoparadoxa australica CS_1217)back to top |