mRNA_C-australica_Contig_10305.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-australica_Contig_10305.1.1 vs. uniprot
Match: A0A7V8QI96_9GAMM (Tetratricopeptide repeat protein n=1 Tax=Ectothiorhodospiraceae bacterium WFHF3C12 TaxID=1914406 RepID=A0A7V8QI96_9GAMM)

HSP 1 Score: 168 bits (425), Expect = 5.310e-48
Identity = 87/148 (58.78%), Postives = 113/148 (76.35%), Query Frame = 1

Query:    1 KITQALAQVYFDTGRGKAAADVYEKAAAVHPELTHEAAEFHRRAGQLFRALNLNARVRDPKEKMRQRVAILVELERYEQVAGAQASLNRVGLLEDQNIRYALAYSLFKAGKFDAAEAHLSRLTKGDLVRQATQLRQYMQECRSDPWLC 444
            ++T  LA  Y D+G+   AA+++E+AA   PEL  EAAE HRRA QLFRALNLNARV D ++K++QR+AIL+EL+RYE VAG   SL RVGLL+DQN+RYALAY+ FK+G F+ AE HLS+LT  +L R+AT LR+ M+EC+   W C
Sbjct:  239 RVTVELANAYLDSGQVVTAANLFEQAAVDDPELLSEAAELHRRARQLFRALNLNARVADQRKKLKQRLAILIELKRYELVAGMSGSLYRVGLLDDQNVRYALAYAHFKSGDFEIAEQHLSQLTDSELFRRATALRKAMEECQDARWKC 386

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BLAST of mRNA_C-australica_Contig_10305.1.1 vs. uniprot
Match: A0A372BU13_9GAMM (Uncharacterized protein n=2 Tax=unclassified Wenzhouxiangella TaxID=2613841 RepID=A0A372BU13_9GAMM)

HSP 1 Score: 151 bits (381), Expect = 1.920e-41
Identity = 74/148 (50.00%), Postives = 110/148 (74.32%), Query Frame = 1

Query:    1 KITQALAQVYFDTGRGKAAADVYEKAAAVHPELTHEAAEFHRRAGQLFRALNLNARVRDPKEKMRQRVAILVELERYEQVAGAQASLNRVGLLEDQNIRYALAYSLFKAGKFDAAEAHLSRLTKGDLVRQATQLRQYMQECRSDPWLC 444
            ++ + LAQ + +  +   AAD+  +AA + P L  EAAE +RRAG L +AL LNARV D  +K++QR+AI +EL R++Q AG ++ L R GLL +++IRYALAY+LFK G+++ AE+HL+RLT+ DL R+A +LR+ M++CR +PWLC
Sbjct:  242 RLARVLAQTWLELDKVLPAADILHEAARLDPALMAEAAELYRRAGWLMQALTLNARVIDQSKKLKQRLAIFIELGRFDQAAGMESDLVRTGLLNEEDIRYALAYALFKTGRYEQAESHLARLTQDDLFRKANELRRAMEQCRDEPWLC 389

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BLAST of mRNA_C-australica_Contig_10305.1.1 vs. uniprot
Match: A0A3E1KAS4_9GAMM (Uncharacterized protein n=1 Tax=Wenzhouxiangella sediminis TaxID=1792836 RepID=A0A3E1KAS4_9GAMM)

HSP 1 Score: 150 bits (380), Expect = 2.980e-41
Identity = 75/148 (50.68%), Postives = 109/148 (73.65%), Query Frame = 1

Query:    1 KITQALAQVYFDTGRGKAAADVYEKAAAVHPELTHEAAEFHRRAGQLFRALNLNARVRDPKEKMRQRVAILVELERYEQVAGAQASLNRVGLLEDQNIRYALAYSLFKAGKFDAAEAHLSRLTKGDLVRQATQLRQYMQECRSDPWLC 444
            ++ + LAQ + D  +   AAD+  +AA + PEL  EAAE +RRAG L +AL LNA+V D  +K++QR+AI +EL R++Q AG +  L R GLL +++IRYALAY+LFK G+++ AE+HLS LT+ DL R+A +LR+ M++CR +PWLC
Sbjct:  247 RLARVLAQTWLDREQVLPAADILHEAARLDPELMAEAAELYRRAGWLMQALTLNAQVIDQAKKLKQRLAIFIELGRFDQAAGMEPDLVRTGLLSEEDIRYALAYALFKTGRYEQAESHLSLLTRNDLFRKANELRRAMEQCRDEPWLC 394

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BLAST of mRNA_C-australica_Contig_10305.1.1 vs. uniprot
Match: A0A6B3W5J1_9GAMM (Tetratricopeptide repeat protein n=1 Tax=Wenzhouxiangella sp. XN201 TaxID=2710755 RepID=A0A6B3W5J1_9GAMM)

HSP 1 Score: 150 bits (378), Expect = 5.330e-41
Identity = 73/148 (49.32%), Postives = 108/148 (72.97%), Query Frame = 1

Query:    1 KITQALAQVYFDTGRGKAAADVYEKAAAVHPELTHEAAEFHRRAGQLFRALNLNARVRDPKEKMRQRVAILVELERYEQVAGAQASLNRVGLLEDQNIRYALAYSLFKAGKFDAAEAHLSRLTKGDLVRQATQLRQYMQECRSDPWLC 444
            ++ + LAQ + D  +   AAD+   AA + P L  EAAE +RRAG L +AL LNARV D  +K++QR+A+ +EL R++Q AG ++ L R GLL +++IRYALAY+LFK G+++ AE+HL+RLT+ DL R+A +LR+ M++CR +PW C
Sbjct:  242 RLARVLAQTWLDLDKILPAADILHDAARLDPSLMAEAAELYRRAGWLMQALTLNARVIDQPKKLKQRLAVFIELGRFDQAAGMESDLVRTGLLNEEDIRYALAYALFKTGRYEQAESHLTRLTRDDLFRKANELRRAMEQCRDEPWFC 389

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BLAST of mRNA_C-australica_Contig_10305.1.1 vs. uniprot
Match: UPI001CA6F16E (tetratricopeptide repeat protein n=1 Tax=Algiphilus sp. NNCM1 TaxID=2834409 RepID=UPI001CA6F16E)

HSP 1 Score: 145 bits (367), Expect = 1.880e-39
Identity = 74/143 (51.75%), Postives = 101/143 (70.63%), Query Frame = 1

Query:   16 LAQVYFDTGRGKAAADVYEKAAAVHPELTHEAAEFHRRAGQLFRALNLNARVRDPKEKMRQRVAILVELERYEQVAGAQASLNRVGLLEDQNIRYALAYSLFKAGKFDAAEAHLSRLTKGDLVRQATQLRQYMQECRSDPWLC 444
            LA  Y +T R  AAA ++E+AAA +PELT EA+E +R AG    ALNLNAR  D ++K +QR+A+LV+LE++EQVA  +  L RVGL E+ ++RYALAY+ FK G+F+ AE++L+ L+  DL +QAT LR  M  C   PW C
Sbjct:  238 LAHTYLETRRTLAAARLFEQAAAFYPELTSEASELYRDAGHTMHALNLNARTADSQKKFKQRLALLVQLEQFEQVAAMERDLKRVGLTEEGSVRYALAYAFFKTGRFEKAESYLAGLSDPDLFKQATNLRSAMSSCEESPWAC 380

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BLAST of mRNA_C-australica_Contig_10305.1.1 vs. uniprot
Match: UPI001781C8CC (tetratricopeptide repeat protein n=1 Tax=Pseudomarimonas arenosa TaxID=2774145 RepID=UPI001781C8CC)

HSP 1 Score: 145 bits (367), Expect = 1.880e-39
Identity = 76/147 (51.70%), Postives = 102/147 (69.39%), Query Frame = 1

Query:    4 ITQALAQVYFDTGRGKAAADVYEKAAAVHPELTHEAAEFHRRAGQLFRALNLNARVRDPKEKMRQRVAILVELERYEQVAGAQASLNRVGLLEDQNIRYALAYSLFKAGKFDAAEAHLSRLTKGDLVRQATQLRQYMQECRSDPWLC 444
            I++ALAQ + + G   AAA++  + A     L  E+AE  RRAG   RAL LNARV D + K++QRV ILVEL+R+EQVAG ++ L R GLL D+++RYALAY+ F+ G F+A E HLS LT+ DL R+AT+LR+ MQ+C    W C
Sbjct:  234 ISKALAQTWLEKGNAYAAAEILAEVAERERSLFAESAELFRRAGHPMRALMLNARVEDSERKLKQRVGILVELKRFEQVAGMESELYRAGLLADEDLRYALAYAFFRGGNFEAVERHLSALTRSDLFRKATELRRLMQDCSGQRWTC 380

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BLAST of mRNA_C-australica_Contig_10305.1.1 vs. uniprot
Match: A0A5C8A1V3_9RHOO (Tetratricopeptide repeat protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A5C8A1V3_9RHOO)

HSP 1 Score: 145 bits (365), Expect = 3.570e-39
Identity = 73/148 (49.32%), Postives = 104/148 (70.27%), Query Frame = 1

Query:    4 ITQALAQVYFDTGRGKAAADVYEKAAAVHPELTHEAAEFHRRAGQLFRALNLNARVRDPKEKMRQRVAILVELERYEQVAGAQASLNRVGLLEDQNIRYALAYSLFKAGKFDAAEAHLSRLTKGDLVRQATQLRQYMQECRSDPWLCA 447
            I +ALAQ + + G   AAA+V    A   P+L  EAAE +RRAG+  +ALNLNARV DP+ K++QRV + +  +RY+++  A+ +L R GLL+D+++RYALAY+ +K   F A+E HL+ LT+ DL R+AT+LR+ MQEC   PW CA
Sbjct:  232 IAKALAQTWLEQGNPLAAAEVMAAQAEREPDLLSEAAELYRRAGRTSQALNLNARVTDPQRKLKQRVGLWIAAQRYDELTAAEPALARAGLLDDEDVRYALAYAWYKGRDFAASERHLAALTRSDLFRKATELRRLMQECADTPWTCA 379

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BLAST of mRNA_C-australica_Contig_10305.1.1 vs. uniprot
Match: A0A7Y2YDB9_9GAMM (Tetratricopeptide repeat protein n=2 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2YDB9_9GAMM)

HSP 1 Score: 145 bits (365), Expect = 3.710e-39
Identity = 72/147 (48.98%), Postives = 105/147 (71.43%), Query Frame = 1

Query:    4 ITQALAQVYFDTGRGKAAADVYEKAAAVHPELTHEAAEFHRRAGQLFRALNLNARVRDPKEKMRQRVAILVELERYEQVAGAQASLNRVGLLEDQNIRYALAYSLFKAGKFDAAEAHLSRLTKGDLVRQATQLRQYMQECRSDPWLC 444
            + + LA VY D  +  AAAD+  +AA + P L  EAAE +RR+GQ +RAL+LN ++ D  EK RQR+A+ ++L  +EQ A  +  L RVGLLE++++RYA+AY+LFK+G+FD AE HL+ LT+ DL R+A +LR+ +Q+C  D W C
Sbjct:  234 VKKVLAHVYLDRNQLTAAADLIYQAALIDPTLLAEAAELYRRSGQAYRALSLNGQLADQPEKFRQRLALYLQLRYFEQAAAMETPLYRVGLLEEEDLRYAIAYALFKSGEFDRAEVHLAELTRPDLFRKAAELRRAIQDCEEDSWKC 380

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BLAST of mRNA_C-australica_Contig_10305.1.1 vs. uniprot
Match: A0A6M8VWS9_9PROT (Tetratricopeptide repeat protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6M8VWS9_9PROT)

HSP 1 Score: 145 bits (365), Expect = 4.510e-39
Identity = 73/148 (49.32%), Postives = 106/148 (71.62%), Query Frame = 1

Query:    1 KITQALAQVYFDTGRGKAAADVYEKAAAVHPELTHEAAEFHRRAGQLFRALNLNARVRDPKEKMRQRVAILVELERYEQVAGAQASLNRVGLLEDQNIRYALAYSLFKAGKFDAAEAHLSRLTKGDLVRQATQLRQYMQECRSDPWLC 444
            ++ + LAQ + D  +  +AA +   AA   P L  EAAE +RRAG L +AL LNA+V D  +K++QR+AI +EL R++Q +G +  L R GLL+D++IRYALAY+LFK G+++ AEAHL RLT+ DL R+A++LR+ M +C  +PWLC
Sbjct:  243 RLARVLAQTWIDLDQILSAAGILHDAARRDPSLKAEAAELYRRAGWLMQALTLNAQVIDQAKKLKQRLAIFIELGRFDQASGMERDLIRTGLLDDEDIRYALAYALFKTGRYEQAEAHLGRLTRNDLFRKASELRRAMAQCAEEPWLC 390

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BLAST of mRNA_C-australica_Contig_10305.1.1 vs. uniprot
Match: UPI00200366A5 (tetratricopeptide repeat protein n=1 Tax=Lysobacter sp. CAU 1642 TaxID=2933270 RepID=UPI00200366A5)

HSP 1 Score: 142 bits (359), Expect = 2.390e-38
Identity = 78/148 (52.70%), Postives = 101/148 (68.24%), Query Frame = 1

Query:    4 ITQALAQVYFDTGRGKAAADVYEKAAAVHPELTHEAAEFHRRAGQLFRALNLNARVRDPKEKMRQRVAILVELERYEQVAGAQASLNRVGLLEDQNIRYALAYSLFKAGKFDAAEAHLSRLTKGDLVRQATQLRQYMQECRSDPWLCA 447
            I +ALAQ + + G   AAA++    A   P L  EAAE  RRAG   RAL LNAR+ D + K++QRV ILVEL R+EQVAG +A+L R GLL D++IRYALAY+ F+ G F+A E HLS L + +L R+AT+LR+ MQ+C    W CA
Sbjct:  225 IGKALAQTWLEKGNAYAAAEILAIEAEREPALLAEAAELFRRAGHPMRALMLNARISDSERKLKQRVGILVELGRFEQVAGMEAALYRAGLLADEDIRYALAYAHFRGGNFEAVERHLSALKRPELFRKATELRRLMQDCADARWTCA 372

The following BLAST results are available for this feature:

BLAST of mRNA_C-australica_Contig_10305.1.1 vs. uniprot

BLAST of mRNA_C-australica_Contig_10305.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

0


Match Name	E-value	Identity	Description
A0A7V8QI96_9GAMM	5.310e-48	58.78	Tetratricopeptide repeat protein n=1 Tax=Ectothior...	[more]
A0A372BU13_9GAMM	1.920e-41	50.00	Uncharacterized protein n=2 Tax=unclassified Wenzh...	[more]
A0A3E1KAS4_9GAMM	2.980e-41	50.68	Uncharacterized protein n=1 Tax=Wenzhouxiangella s...	[more]
A0A6B3W5J1_9GAMM	5.330e-41	49.32	Tetratricopeptide repeat protein n=1 Tax=Wenzhouxi...	[more]
UPI001CA6F16E	1.880e-39	51.75	tetratricopeptide repeat protein n=1 Tax=Algiphilu...	[more]
UPI001781C8CC	1.880e-39	51.70	tetratricopeptide repeat protein n=1 Tax=Pseudomar...	[more]
A0A5C8A1V3_9RHOO	3.570e-39	49.32	Tetratricopeptide repeat protein n=2 Tax=Proteobac...	[more]
A0A7Y2YDB9_9GAMM	3.710e-39	48.98	Tetratricopeptide repeat protein n=2 Tax=Xanthomon...	[more]
A0A6M8VWS9_9PROT	4.510e-39	49.32	Tetratricopeptide repeat protein n=1 Tax=Proteobac...	[more]
UPI00200366A5	2.390e-38	52.70	tetratricopeptide repeat protein n=1 Tax=Lysobacte...	[more]

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Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-australica_Contig_10305:90..539+
coding sequence from alignment at C-australica_Contig_10305:90..539+

protein sequence of mRNA_C-australica_Contig_10305.1.1

>prot_C-australica_Contig_10305.1.1 ID=prot_C-australica_Contig_10305.1.1|Name=mRNA_C-australica_Contig_10305.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=150bp
KITQALAQVYFDTGRGKAAADVYEKAAAVHPELTHEAAEFHRRAGQLFRA
LNLNARVRDPKEKMRQRVAILVELERYEQVAGAQASLNRVGLLEDQNIRY
ALAYSLFKAGKFDAAEAHLSRLTKGDLVRQATQLRQYMQECRSDPWLCA*

mRNA from alignment at C-australica_Contig_10305:90..539+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-australica_Contig_10305.1.1 ID=mRNA_C-australica_Contig_10305.1.1|Name=mRNA_C-australica_Contig_10305.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=450bp|location=Sequence derived from alignment at C-australica_Contig_10305:90..539+ (Chrysoparadoxa australica CS_1217)
AAGATCACCCAGGCCCTGGCGCAGGTGTACTTCGACACCGGCCGCGGCAA
GGCGGCAGCGGATGTCTATGAAAAGGCCGCTGCCGTGCACCCGGAACTGA
CCCACGAGGCGGCCGAGTTCCACCGGCGCGCCGGGCAGCTGTTCCGGGCG
CTGAACCTGAATGCCCGCGTGCGCGATCCCAAGGAAAAGATGCGCCAGCG
CGTAGCCATCCTGGTCGAGCTGGAACGCTACGAACAGGTCGCCGGCGCCC
AGGCCTCGCTCAATCGCGTGGGCCTGCTGGAAGACCAGAACATTCGCTAC
GCCCTAGCCTATTCGTTGTTCAAGGCCGGCAAGTTCGATGCGGCGGAGGC
GCATCTCAGCCGACTCACCAAGGGGGATCTGGTTCGCCAGGCCACCCAGT
TACGCCAGTACATGCAGGAATGCCGTAGCGATCCCTGGCTGTGCGCGTAA

Coding sequence (CDS) from alignment at C-australica_Contig_10305:90..539+

>mRNA_C-australica_Contig_10305.1.1 ID=mRNA_C-australica_Contig_10305.1.1|Name=mRNA_C-australica_Contig_10305.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=450bp|location=Sequence derived from alignment at C-australica_Contig_10305:90..539+ (Chrysoparadoxa australica CS_1217)
AAGATCACCCAGGCCCTGGCGCAGGTGTACTTCGACACCGGCCGCGGCAA
GGCGGCAGCGGATGTCTATGAAAAGGCCGCTGCCGTGCACCCGGAACTGA
CCCACGAGGCGGCCGAGTTCCACCGGCGCGCCGGGCAGCTGTTCCGGGCG
CTGAACCTGAATGCCCGCGTGCGCGATCCCAAGGAAAAGATGCGCCAGCG
CGTAGCCATCCTGGTCGAGCTGGAACGCTACGAACAGGTCGCCGGCGCCC
AGGCCTCGCTCAATCGCGTGGGCCTGCTGGAAGACCAGAACATTCGCTAC
GCCCTAGCCTATTCGTTGTTCAAGGCCGGCAAGTTCGATGCGGCGGAGGC
GCATCTCAGCCGACTCACCAAGGGGGATCTGGTTCGCCAGGCCACCCAGT
TACGCCAGTACATGCAGGAATGCCGTAGCGATCCCTGGCTGTGCGCGTAA