mRNA_C-australica_Contig_10302.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10302.1.1 vs. uniprot
Match: A0A7V1BEK8_9RHOB (DUF1236 domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7V1BEK8_9RHOB) HSP 1 Score: 194 bits (494), Expect = 4.350e-59 Identity = 135/216 (62.50%), Postives = 167/216 (77.31%), Query Frame = 1 Query: 25 MKRVNFALMAAATAMATLPAIASATTASAVTDLNIRSGPGSQYEVLGVIDGGANAEVDGCMDGQSWCKVNYEGTSGWAYAPYLAVNVDNQAYVLPERPRTVEISTVTYENTEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPTTESITYIESNPVEPVYLEGEVAVGAGVPTEVTTYELPENNLRYANVNGQTVVIDA 672 M+ L++A P++AS+ A A TDLNIRSGPG Q+ V+GVI GGA+A VDGC+ Q WCKV+++G +GW+Y+ YLAV+V+ QA L RP ++E++TVTYENTEE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV+PTTE++TYI+SNPVE VYL+GEV VGAG+P VTTYELP+ LRY NVN QTV+++A Sbjct: 1 MRNAKLGLISAIALATAAPSLASSAEAIAATDLNIRSGPGPQFSVVGVIPGGADANVDGCLAEQRWCKVSHDGVAGWSYSDYLAVDVEKQAVALTTRPASIEVNTVTYENTEETQSDKNAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPTTETVTYIKSNPVETVYLDGEVVVGAGLPEMVTTYELPQGELRYVNVNSQTVLVNA 216
BLAST of mRNA_C-australica_Contig_10302.1.1 vs. uniprot
Match: A0A166Q0D4_9RHOB (SH3b domain-containing protein n=3 Tax=unclassified Sulfitobacter TaxID=196795 RepID=A0A166Q0D4_9RHOB) HSP 1 Score: 182 bits (463), Expect = 2.100e-54 Identity = 114/216 (52.78%), Postives = 146/216 (67.59%), Query Frame = 1 Query: 25 MKRVNFALMAAATAMATLPAIASATTASAVTDLNIRSGPGSQYEVLGVIDGGANAEVDGCMDGQSWCKVNYEGTSGWAYAPYLAVNVDNQAYVLPERPRTVEISTVTYENTEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPTTESITYIESNPVEPVYLEGEVAVGAGVPTEVTTYELPENNLRYANVNGQTVVIDA 672 M+ V +++A + P A + A A TDLN+RS PG Q+EV+ VI GG A + GC++ + WCKV Y+G GW+Y+ YLAVNVD QA L RP +E+ T+TYEN E+ XXXXXXXXXXXXXXXXXXXXXX +EPTTE+IT++++NPVE VYL+GEV VGAGVP VTTYE+P+ LRY N+N QTV++DA Sbjct: 1 MRIVKLGMISAIALTSAAPVFAQSAEAMAATDLNVRSDPGPQFEVVDVIPGGETAAIQGCLEERRWCKVTYDGNEGWSYSDYLAVNVDEQAVALTTRPAVIEVETLTYENVEQTENDTNTGVAAGATAGALXXXXXXXXXXXXXXXXXXXXXXGGAVIEPTTETITFVKANPVETVYLDGEVVVGAGVPQTVTTYEVPQEGLRYVNINSQTVLVDA 216
BLAST of mRNA_C-australica_Contig_10302.1.1 vs. uniprot
Match: A0A2E7Q3R0_9RHOB (SH3b domain-containing protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2E7Q3R0_9RHOB) HSP 1 Score: 182 bits (462), Expect = 2.980e-54 Identity = 124/216 (57.41%), Postives = 161/216 (74.54%), Query Frame = 1 Query: 25 MKRVNFALMAAATAMATLPAIASATTASAVTDLNIRSGPGSQYEVLGVIDGGANAEVDGCMDGQSWCKVNYEGTSGWAYAPYLAVNVDNQAYVLPERPRTVEISTVTYENTEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPTTESITYIESNPVEPVYLEGEVAVGAGVPTEVTTYELPENNLRYANVNGQTVVIDA 672 M+ V +++A + P A + A A TDLN+RSGPG ++V+ VI GG A ++GC++ Q WCKV++ G GW+Y+ YLAVNVD+QA + RP +++ T+TYENTE+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPTTE+IT++ES+PVE VYL+GEV VGAG+P VTT+E+P+ LRY N+NGQTV++DA Sbjct: 1 MRIVKLGMISAIALTSAAPVFADSVEAMAATDLNVRSGPGPHFDVIHVIPGGETAAIEGCLEEQRWCKVSFGGHEGWSYSDYLAVNVDDQAVAVTARPAIIDVQTITYENTEKTQSDRNVGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPTTETITFVESHPVETVYLDGEVVVGAGIPETVTTHEVPQEGLRYVNINGQTVLVDA 216
BLAST of mRNA_C-australica_Contig_10302.1.1 vs. uniprot
Match: UPI00187EA605 (SH3 domain-containing protein n=2 Tax=Marivivens TaxID=1759396 RepID=UPI00187EA605) HSP 1 Score: 181 bits (458), Expect = 1.230e-53 Identity = 92/198 (46.46%), Postives = 114/198 (57.58%), Query Frame = 1 Query: 79 PAIASATTASAVTDLNIRSGPGSQYEVLGVIDGGANAEVDGCMDGQSWCKVNYEGTSGWAYAPYLAVNVDNQAYVLPERPRTVEISTVTYENTEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPTTESITYIESNPVEPVYLEGEVAVGAGVPTEVTTYELPENNLRYANVNGQTVVIDA 672 PA+A A A+A TDLN+RSGPG+ YE +GVI G A ++GC+DG WC+V+Y+GT GW+YAPYL V + + +P VEI TVTY N EE VEPTTE++TYIESNPVEPV L GE+ VGAG+P E+ TYE P+ LRY N+NGQ V IDA Sbjct: 20 PAMAQAADATAATDLNVRSGPGAWYESVGVIPAGEMATIEGCLDGYEWCEVSYDGTEGWSYAPYLTVQAGDNVATIDTQPEQVEIKTVTYVNEEETDEDKGVAAIAGGTAGALIAYALGGPTTAIVASGLLGSAGAAEVVEPTTETMTYIESNPVEPVNLSGEIVVGAGIPAEIVTYETPQEGLRYLNINGQYVAIDA 217
BLAST of mRNA_C-australica_Contig_10302.1.1 vs. uniprot
Match: UPI001110271F (DUF1236 domain-containing protein n=1 Tax=Sulfitobacter sp. BSw21498 TaxID=664426 RepID=UPI001110271F) HSP 1 Score: 179 bits (453), Expect = 5.670e-53 Identity = 127/201 (63.18%), Postives = 153/201 (76.12%), Query Frame = 1 Query: 70 ATLPAIASATTASAVTDLNIRSGPGSQYEVLGVIDGGANAEVDGCMDGQSWCKVNYEGTSGWAYAPYLAVNVDNQAYVLPERPRTVEISTVTYENTEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPTTESITYIESNPVEPVYLEGEVAVGAGVPTEVTTYELP-ENNLRYANVNGQTVVID 669 A LP A A ASA TDLNIRSGP + Y +LGVI GG A +DGC+ +WCKV+Y G GW+YAPYL V+ + +AYV+ ERP VE++TVTYE+T E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EPT E++TYIESNPVE VYL+GEVAVGAGVP +V YE+P ++ RY ++NGQTV+++ Sbjct: 9 AVLPVSAMAMDASAATDLNIRSGPANNYTILGVIPGGEAATLDGCVADGTWCKVSYNGVEGWSYAPYLTVSAEEEAYVVTERPAAVEVTTVTYEDTGETLKDERQGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTVETVTYIESNPVETVYLDGEVAVGAGVPQDVVLYEIPSQSEYRYVDINGQTVIVN 209
BLAST of mRNA_C-australica_Contig_10302.1.1 vs. uniprot
Match: A0A341EDV7_9RHOB (SH3b domain-containing protein n=4 Tax=Sulfitobacter TaxID=60136 RepID=A0A341EDV7_9RHOB) HSP 1 Score: 178 bits (451), Expect = 1.360e-52 Identity = 127/215 (59.07%), Postives = 154/215 (71.63%), Query Frame = 1 Query: 25 MKRVNFALMAAATAMATLPAIASATTASAVTDLNIRSGPGSQYEVLGVIDGGANAEVDGCMDGQSWCKVNYEGTSGWAYAPYLAVNVDNQAYVLPERPRTVEISTVTYENTEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPTTESITYIESNPVEPVYLEGEVAVGAGVPTEVTTYELPENNLRYANVNGQTVVID 669 M V +++A A P A + A A TDLNIRSGPG QY+++GVI GG V+GC+DGQSWC+VN+ T GW+Y+ YLAV+V+ QA L RP TVE+ TVTYE+ + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EP +ITY+ NPV+ VYL+GEV VGAG+PT VTTYE+PE RY N+NG TV++D Sbjct: 1 MNIVKLGMVSAIALGAAAPVYAQSAEAYAATDLNIRSGPGPQYDIVGVIPGGEATMVEGCLDGQSWCRVNFGDTMGWSYSDYLAVDVEEQAVALTTRPATVEVGTVTYEDPDGTAENETAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEPEESTITYVRENPVDTVYLDGEVVVGAGIPTTVTTYEVPETTYRYVNINGATVIVD 215
BLAST of mRNA_C-australica_Contig_10302.1.1 vs. uniprot
Match: UPI001581956F (DUF1236 domain-containing protein n=1 Tax=Sulfitobacter maritimus TaxID=2741719 RepID=UPI001581956F) HSP 1 Score: 177 bits (449), Expect = 2.730e-52 Identity = 126/215 (58.60%), Postives = 155/215 (72.09%), Query Frame = 1 Query: 25 MKRVNFALMAAATAMATLPAIASATTASAVTDLNIRSGPGSQYEVLGVIDGGANAEVDGCMDGQSWCKVNYEGTSGWAYAPYLAVNVDNQAYVLPERPRTVEISTVTYENTEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPTTESITYIESNPVEPVYLEGEVAVGAGVPTEVTTYELPENNLRYANVNGQTVVID 669 M + +++A A P A A A TDLN+RSGPG QY+++GVI GG A VDGC+D SWC+V+++GT GW+Y+ YLAV V+ QA L ERP +VEI TVTYE+ E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EP +++TY+ NPVE VYL+GEV VGAG+PT V TYE+PE+ RY N+NG TV++D Sbjct: 1 MNIMKLGMVSAIALGAAAPVYAQTAEAIAATDLNVRSGPGPQYDIVGVIPGGEAAMVDGCLDSASWCQVSFDGTQGWSYSDYLAVEVEEQAVALTERPASVEIGTVTYEDPEGTAKNETAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEPDEKTVTYVRENPVETVYLDGEVVVGAGIPTTVETYEVPESEYRYVNINGATVLVD 215
BLAST of mRNA_C-australica_Contig_10302.1.1 vs. uniprot
Match: A0A073J1B7_9RHOB (Uncharacterized protein n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A073J1B7_9RHOB) HSP 1 Score: 176 bits (447), Expect = 5.470e-52 Identity = 134/217 (61.75%), Postives = 162/217 (74.65%), Query Frame = 1 Query: 19 VTMKRVNFALMAAATAMATLPAIASATTASAVTDLNIRSGPGSQYEVLGVIDGGANAEVDGCMDGQSWCKVNYEGTSGWAYAPYLAVNVDNQAYVLPERPRTVEISTVTYENTEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPTTESITYIESNPVEPVYLEGEVAVGAGVPTEVTTYELPENNLRYANVNGQTVVID 669 +++ ++ A + A TA A PA A + A A TDLNIRSGPG QYE+LGVI G + VDGC+ SWCKV ++G +GW+ A YLAV V +QA L RP TVE+++VTYENT + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PTTE+ITY+ +NPVE VYL+GEVAVGA VP VTTYE+P++ LRYA +NGQ VV+D Sbjct: 1 MSITKLGMASIIALTAAA--PAFAQSAEAIAATDLNIRSGPGPQYEILGVIPAGQSTAVDGCLAEASWCKVVFDGKTGWSSADYLAVGVQDQAVALSTRPATVEVNSVTYENTAKTQADQNAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTTETITYVTTNPVETVYLDGEVAVGAVVPQNVTTYEVPQDGLRYATINGQAVVVD 215
BLAST of mRNA_C-australica_Contig_10302.1.1 vs. uniprot
Match: UPI000DF1C152 (DUF1236 domain-containing protein n=1 Tax=Pseudosulfitobacter sp. DSM 107133 TaxID=2883100 RepID=UPI000DF1C152) HSP 1 Score: 174 bits (442), Expect = 3.110e-51 Identity = 127/201 (63.18%), Postives = 150/201 (74.63%), Query Frame = 1 Query: 70 ATLPAIASATTASAVTDLNIRSGPGSQYEVLGVIDGGANAEVDGCMDGQSWCKVNYEGTSGWAYAPYLAVNVDNQAYVLPERPRTVEISTVTYENTEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPTTESITYIESNPVEPVYLEGEVAVGAGVPTEVTTYELPENNLRYANVNGQTVVIDA 672 A P +A T A A TDLNIRSGPG QY++LGVI GG +A VDGC+ +WCKV ++G SGW+ + YLAV VD QA L RP TVE+++VTYE+T + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TTE++TYI +NPVE VYL+GEVAVGA VP V TYE+P+ LRY +NGQTVV+DA Sbjct: 16 AAAPVLAQNTAAVAATDLNIRSGPGPQYDILGVIPGGESAVVDGCLTDAAWCKVVFDGKSGWSSSDYLAVAVDEQAVALSTRPATVEVNSVTYEDTAQTQADKNTGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTETVTYITTNPVETVYLDGEVAVGATVPANVPTYEVPQEGLRYLTINGQTVVVDA 216
BLAST of mRNA_C-australica_Contig_10302.1.1 vs. uniprot
Match: A0A1I1XH98_9RHOB (Uncharacterized conserved protein YraI n=1 Tax=Sulfitobacter brevis TaxID=74348 RepID=A0A1I1XH98_9RHOB) HSP 1 Score: 174 bits (442), Expect = 3.200e-51 Identity = 141/216 (65.28%), Postives = 170/216 (78.70%), Query Frame = 1 Query: 25 MKRVNFALMAAATAMATLPAIASATTASAVTDLNIRSGPGSQYEVLGVIDGGANAEVDGCMDGQSWCKVNYEGTSGWAYAPYLAVNVDNQAYVLPERPRTVEISTVTYENTEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPTTESITYIESNPVEPVYLEGEVAVGAGVPTEVTTYELP-ENNLRYANVNGQTVVID 669 M+ V +++A A +PA+A ++ A AVTDLNIRSGPG YEV+GVI G A VDGC+ SWCKV++EG SGW+ + YLAV V+ QA L RP V+I TVTYENT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPTTE++TY++SNPV+ VYL+GEV VGA VP VT Y++P + LRY N+NGQTV+++ Sbjct: 1 MRIVKLGMISAIALSAAVPALAQSSEAIAVTDLNIRSGPGPHYEVVGVIPGSKAAMVDGCLAESSWCKVSFEGASGWSSSDYLAVGVEEQAVALTARPEAVKIETVTYENTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPTTETVTYVQSNPVDTVYLDGEVVVGAVVPETVTYYDVPAQPELRYLNINGQTVLVE 216 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10302.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10302.1.1 >prot_C-australica_Contig_10302.1.1 ID=prot_C-australica_Contig_10302.1.1|Name=mRNA_C-australica_Contig_10302.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=216bp MKRVNFALMAAATAMATLPAIASATTASAVTDLNIRSGPGSQYEVLGVIDback to top mRNA from alignment at C-australica_Contig_10302:3..674- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10302.1.1 ID=mRNA_C-australica_Contig_10302.1.1|Name=mRNA_C-australica_Contig_10302.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=672bp|location=Sequence derived from alignment at C-australica_Contig_10302:3..674- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10302:3..674- >mRNA_C-australica_Contig_10302.1.1 ID=mRNA_C-australica_Contig_10302.1.1|Name=mRNA_C-australica_Contig_10302.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=648bp|location=Sequence derived from alignment at C-australica_Contig_10302:3..674- (Chrysoparadoxa australica CS_1217)back to top |