mRNA_C-australica_Contig_10300.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-australica_Contig_10300.1.1 vs. uniprot
Match: A0A2D4S8F9_9GAMM (Uncharacterized protein n=1 Tax=Salinisphaeraceae bacterium TaxID=2026789 RepID=A0A2D4S8F9_9GAMM)

HSP 1 Score: 182 bits (463), Expect = 8.790e-52
Identity = 95/170 (55.88%), Postives = 123/170 (72.35%), Query Frame = 1

Query:    1 LAFVFLELGQGATARGLFKRIRLDGPFSDKALLGLGWSELAPDGEPQDLLLLRRIRCLEDPARLLPDSLPVLRRMPRESCGRPRMFRDRDEFQWEDGGETEEERYRRALRPWLELGARNADDVAVQEALMATGHAFQQLAASQRAETAYAEALDRLLPRRQATRDLLDRL 510
            LAF +LE+GQGATAR LF+R+RLDGP+SDKALLGLGW+ELAPDG  Q+  +   I+C ED ARLLP+ LPVLRR+PR+SCG  R FR+ D+F  + G ETE ERY+RAL PWLELG RN   +AVQE L    +A+ ++ A + A   Y  A+ +L P+RQ     +++L
Sbjct:  230 LAFGYLEIGQGATARALFQRVRLDGPYSDKALLGLGWAELAPDGGAQERTVTTEIKCREDAARLLPEGLPVLRRIPRKSCGPARRFRETDKFARKKGAETEVERYKRALIPWLELGQRNPQALAVQEGLAMVPYAYSKIGAPRSASKYYQTAIAQLEPQRQQVERTIEQL 399

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BLAST of mRNA_C-australica_Contig_10300.1.1 vs. uniprot
Match: UPI0012EC3B24 (tetratricopeptide repeat protein n=1 Tax=Algiphilus aromaticivorans TaxID=382454 RepID=UPI0012EC3B24)

HSP 1 Score: 84.0 bits (206), Expect = 1.130e-15
Identity = 62/156 (39.74%), Postives = 87/156 (55.77%), Query Frame = 1

Query:    1 LAFVFLELGQGATARGLFKRIRLDGPFSDKALLGLGWSELAPDGEPQDLLLLRRIRCLEDPARLLPD--SLPVLRRMPRESCGRPRMFRDRDEFQWEDGGETEEERYRRALRPWLELGARNADDVAVQEALMATGHAFQQLAASQRAETAYAEALD 462
            L + FL   QG TAR LF R+R +GPFS++ALLG+GW+ELAP G  QD    R+    ++ +    D  SL VL R             +R  F+ ++ GE+EEE   RAL  W EL  R+  D AVQE ++A  +A  +L   ++A   Y +A+D
Sbjct:  390 LGYHFLRAEQGGTARPLFSRVRTEGPFSNRALLGMGWAELAPRGSRQD----RQTLVEDEDSEGFRDVASLGVLIRPGFFEADIYERLANRP-FRRDNLGESEEESLLRALVVWNELVKRDPMDAAVQEGMLAIPYALDRLGDYEQAMQRYQKAID 540

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BLAST of mRNA_C-australica_Contig_10300.1.1 vs. uniprot
Match: UPI0012FC0192 (hypothetical protein n=1 Tax=Solimonas soli TaxID=413479 RepID=UPI0012FC0192)

HSP 1 Score: 83.6 bits (205), Expect = 1.470e-15
Identity = 65/176 (36.93%), Postives = 93/176 (52.84%), Query Frame = 1

Query:    1 LAFVFLELGQGATARGLFKRIRLDGPFSDKALLGLGWSELAPDG------EPQDLLLLRRIRCLEDPARLLPDSLPVLRR---MPRESCGRPRMFRDRDEFQWEDGGETEEERYRRALRPWLELGARNADDVAVQEALMATGHAFQQLAASQRAETAYAEALDRLLPRRQATRDLL 501
            L + FL+  QG TA+ +F R+R++GPFS++ALLGLGWSELAP G      +P D          + P+++   +L VL R   +  +   R  M      F+   G    E   RRAL PWLEL +R+  D AVQEA +A  +   QL A  +A   Y +A++ L   R+   D +
Sbjct:  223 LGWQFLQTQQGGTAKPVFGRVRVEGPFSNRALLGLGWSELAPQGARIQRSDPPD-------DKAQGPSKISFSTLGVLLRPGYLDSDVFDRAGMR----SFRLRSGNPESEAALRRALVPWLELISRDPMDPAVQEAWLAIPYTLDQLGAHTQALQYYEKAVEVLETSRKRMNDAM 387

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BLAST of mRNA_C-australica_Contig_10300.1.1 vs. uniprot
Match: A0A522KWK8_9GAMM (Tetratricopeptide repeat protein n=1 Tax=Sinobacteraceae bacterium TaxID=1969813 RepID=A0A522KWK8_9GAMM)

HSP 1 Score: 82.8 bits (203), Expect = 2.400e-15
Identity = 63/169 (37.28%), Postives = 92/169 (54.44%), Query Frame = 1

Query:    1 LAFVFLELGQGATARGLFKRIRLDGPFSDKALLGLGWSELAPDGE-----------PQDLLL--LRRIRCLEDPARLLPDSLPVLRRMPRESCGRPRMFRDRDEFQWEDGGETEEERYRRALRPWLELGARNADDVAVQEALMATGHAFQQLAASQRAETAYAEALDRL 468
            L F FL   QG TA+ LF R+R+ GP+S++ALLGLGW+ELAP GE           P+D  L  L  +  L +PARL  D   V +R+   S            F+ E   + +E+  R+AL PW EL  R+  D AVQE ++A   A +++ A  +A+  Y ++++ L
Sbjct:   92 LGFHFLRKQQGGTAKPLFSRVRISGPYSNRALLGLGWAELAPQGEKQKKTAIADPEPEDNPLKGLATLGILINPARLEGD---VYKRVGLRS------------FKLEKVKKEDEDALRKALVPWAELINRDPMDPAVQEGMLAIPFALERIGAHIQAQQFYEKSVELL 245

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BLAST of mRNA_C-australica_Contig_10300.1.1 vs. uniprot
Match: A0A3N0VEQ8_9GAMM (Tetratricopeptide repeat protein n=2 Tax=Stagnimonas aquatica TaxID=2689987 RepID=A0A3N0VEQ8_9GAMM)

HSP 1 Score: 82.4 bits (202), Expect = 3.870e-15
Identity = 63/169 (37.28%), Postives = 90/169 (53.25%), Query Frame = 1

Query:    1 LAFVFLELGQGATARGLFKRIRLDGPFSDKALLGLGWSELAPDGE-----------PQDLLL--LRRIRCLEDPARLLPDSLPVLRRMPRESCGRPRMFRDRDEFQWEDGGETEEERYRRALRPWLELGARNADDVAVQEALMATGHAFQQLAASQRAETAYAEALDRL 468
            L F FL   QG TA+ LF R+R+ GP+S++ALLGLGW+ELAP GE           P+D  L  L  +  L +PARL      V +R    S            F+ E   + +EE  R+AL PW EL  R+  D AVQE ++A   A +++ A  +A+  Y ++++ L
Sbjct:  377 LGFHFLRKQQGGTAKPLFSRVRITGPYSNRALLGLGWAELAPQGEKQKKTDIADPEPEDNPLRGLATLGILINPARL--GDYDVYKRAGLRS------------FKLEKVKKEDEEALRKALVPWAELINRDPMDPAVQEGMLAIPFALERIGAHIQAQQFYEKSVELL 531

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BLAST of mRNA_C-australica_Contig_10300.1.1 vs. uniprot
Match: UPI0003A7613E (hypothetical protein n=2 Tax=Solimonas TaxID=413435 RepID=UPI0003A7613E)

HSP 1 Score: 80.9 bits (198), Expect = 1.270e-14
Identity = 61/162 (37.65%), Postives = 83/162 (51.23%), Query Frame = 1

Query:    1 LAFVFLELGQGATARGLFKRIRLDGPFSDKALLGLGWSELAPDGEPQDLLLLRRIRCLEDPARLLPDSLPVLRRMPRESCGRPRMFRDRD--------EFQWEDGGETEEERYRRALRPWLELGARNADDVAVQEALMATGHAFQQLAASQRAETAYAEALD 462
            L + FL+  QG TA+ +  R+R+DGPFS++ALLGLGW+ELAP G         RI+  E P    P+S             RP  + DRD         F+   G    E   RRAL  W+EL +R+  D AVQEA +A  +   QL A  +A   Y +A++
Sbjct:  221 LGWHFLQTQQGGTAKPVLSRVRVDGPFSNRALLGLGWAELAPQGS--------RIQKSETPDDQAPESRTYTSFSTLGVLIRP-GYLDRDVFDRAGMRSFRLRSGNPDSEAALRRALVAWVELISRDPMDPAVQEAWLAIPYTLDQLGAHTQALQYYEKAVE 373

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BLAST of mRNA_C-australica_Contig_10300.1.1 vs. uniprot
Match: A0A2D4SCA3_9GAMM (Uncharacterized protein n=1 Tax=Salinisphaeraceae bacterium TaxID=2026789 RepID=A0A2D4SCA3_9GAMM)

HSP 1 Score: 79.7 bits (195), Expect = 3.300e-14
Identity = 59/145 (40.69%), Postives = 81/145 (55.86%), Query Frame = 1

Query:    1 LAFVFLELGQGATARGLFKRIRLDGPFSDKALLGLGWSELAPDGEPQDLLLLRRIRCLEDP-ARLLPDSLPVLRRMPRESCG---RPRMFR--DRDEFQWEDGGETEEERYRRALRPWLELGARNADDVAVQEALMATGHAFQQL 417
            LA+ FL   QGATA+ +F+RIRL GP  ++ALLG GWSELAP GE  D     R+   ++P A     + P   R  +E      R   FR  +   F   D  +T+EE  R+AL PW +L  ++A D  VQEAL++  +A  Q+
Sbjct:  401 LAYEFLRSEQGATAKTVFQRIRLQGPHVNQALLGYGWSELAPRGERVD-----RVAVGDEPEAGEYGITEPNQGRFDQEKMSDRLRVDPFRRINLGPFPMADQADTKEEAARQALVPWADLAEKDATDPTVQEALISIPYALDQM 540

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BLAST of mRNA_C-australica_Contig_10300.1.1 vs. uniprot
Match: UPI001FEE956E (hypothetical protein n=1 Tax=Flagellatimonas centrodinii TaxID=2806210 RepID=UPI001FEE956E)

HSP 1 Score: 79.3 bits (194), Expect = 4.350e-14
Identity = 63/164 (38.41%), Postives = 86/164 (52.44%), Query Frame = 1

Query:    1 LAFVFLELGQGATARGLFKRIRLDGPFSDKALLGLGWSELAPDGEPQDLLLLRRIRCLEDPARLLPDSLPVLRRMPRESCGRPRMFRDRD--------EFQWEDGGETEEERYRRALRPWLELGARNADDVAVQEALMATGHAFQQLAASQRAETAYAEALDRL 468
            L + FLE   G +A+ +F+RIR++GPFS++ALLGLGW+EL+P GE Q     RR   +ED         P           RP  F +RD         F+     E EEE  RRAL  W+EL +RN  D AVQE  +A  ++  +L A  +A   Y  A++ L
Sbjct:  223 LGWHFLEEKLGGSAKSIFQRIRVEGPFSNRALLGLGWAELSPRGERQ-----RRAADIED-------EDPFSNFSTIGGLLRP-GFLERDVYYRAGFRNFRLVKVAEEEEEGLRRALAAWIELISRNPLDPAVQEGWLAIPYSLDKLGAHTQALQYYERAVEEL 373

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BLAST of mRNA_C-australica_Contig_10300.1.1 vs. uniprot
Match: A0A1I2IZ02_9GAMM (Tetratricopeptide repeat-containing protein n=1 Tax=Fontimonas thermophila TaxID=1076937 RepID=A0A1I2IZ02_9GAMM)

HSP 1 Score: 78.6 bits (192), Expect = 8.050e-14
Identity = 59/162 (36.42%), Postives = 86/162 (53.09%), Query Frame = 1

Query:    1 LAFVFLELGQGATARGLFKRIRLDGPFSDKALLGLGWSELAPDGEPQDLLLLRRIRCLEDPARLLPDSLPVLRRMPRESCGRPRMFRDRD--------EFQWEDGGETEEERYRRALRPWLELGARNADDVAVQEALMATGHAFQQLAASQRAETAYAEALD 462
            L + FL+  QG TA+ +  R+RL+GPFS++ALLGLGW+ELAP GE      + +++  ++     PD+ P           RP  F + D         F+     + EEE  RRAL PW+EL +R+  D AVQEA +A      +L A  +A   Y  A++
Sbjct:  220 LGWHFLQSQQGGTAKPILSRVRLEGPFSNRALLGLGWAELAPQGER-----IAKVQVGDEQ----PDASPFTTFSTLGILLRP-GFVEEDIFKRAGMRAFRLRKASKDEEEALRRALVPWVELISRDPMDSAVQEAWLAIAFTLDRLGAYTQALQYYERAVN 371

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BLAST of mRNA_C-australica_Contig_10300.1.1 vs. uniprot
Match: A0A346MWG9_9GAMM (Uncharacterized protein n=2 Tax=Solimonas TaxID=413435 RepID=A0A346MWG9_9GAMM)

HSP 1 Score: 76.6 bits (187), Expect = 3.760e-13
Identity = 59/159 (37.11%), Postives = 85/159 (53.46%), Query Frame = 1

Query:    1 LAFVFLELGQGATARGLFKRIRLDGPFSDKALLGLGWSELAPDGEPQDLLLLRRIRCLEDPARLLPDS-LPVLRRMPRESCGRPRMFRDRD--EFQWEDGGETEEERYRRALRPWLELGARNADDVAVQEALMATGHAFQQLAASQRAETAYAEALDRL 468
            L + FL+  QG TA+ +F R+RL+G FS++ALLGLGW+ELAP GE       RR+   +      P S    L  + R       +F   +   F+     + EEE  R+AL PW+EL +R+  D AVQEA +A      +L A  +A   Y  A+++L
Sbjct:  227 LGYWFLQNKQGGTAKPVFSRVRLEGAFSNRALLGLGWAELAPTGEKT-----RRVEVGDQTKEENPFSNFSTLGVLLRPGFLEDDIFTRANLRSFRLSKARKDEEEALRKALVPWVELISRDPMDPAVQEAWLAIPFTLDRLGAHTQALKYYELAIEQL 380

The following BLAST results are available for this feature:

BLAST of mRNA_C-australica_Contig_10300.1.1 vs. uniprot

BLAST of mRNA_C-australica_Contig_10300.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
A0A2D4S8F9_9GAMM	8.790e-52	55.88	Uncharacterized protein n=1 Tax=Salinisphaeraceae ...	[more]
UPI0012EC3B24	1.130e-15	39.74	tetratricopeptide repeat protein n=1 Tax=Algiphilu...	[more]
UPI0012FC0192	1.470e-15	36.93	hypothetical protein n=1 Tax=Solimonas soli TaxID=...	[more]
A0A522KWK8_9GAMM	2.400e-15	37.28	Tetratricopeptide repeat protein n=1 Tax=Sinobacte...	[more]
A0A3N0VEQ8_9GAMM	3.870e-15	37.28	Tetratricopeptide repeat protein n=2 Tax=Stagnimon...	[more]
UPI0003A7613E	1.270e-14	37.65	hypothetical protein n=2 Tax=Solimonas TaxID=41343...	[more]
A0A2D4SCA3_9GAMM	3.300e-14	40.69	Uncharacterized protein n=1 Tax=Salinisphaeraceae ...	[more]
UPI001FEE956E	4.350e-14	38.41	hypothetical protein n=1 Tax=Flagellatimonas centr...	[more]
A0A1I2IZ02_9GAMM	8.050e-14	36.42	Tetratricopeptide repeat-containing protein n=1 Ta...	[more]
A0A346MWG9_9GAMM	3.760e-13	37.11	Uncharacterized protein n=2 Tax=Solimonas TaxID=41...	[more]

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Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-australica_Contig_10300:308..826-
coding sequence from alignment at C-australica_Contig_10300:308..826-

protein sequence of mRNA_C-australica_Contig_10300.1.1

>prot_C-australica_Contig_10300.1.1 ID=prot_C-australica_Contig_10300.1.1|Name=mRNA_C-australica_Contig_10300.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=173bp
LAFVFLELGQGATARGLFKRIRLDGPFSDKALLGLGWSELAPDGEPQDLL
LLRRIRCLEDPARLLPDSLPVLRRMPRESCGRPRMFRDRDEFQWEDGGET
EEERYRRALRPWLELGARNADDVAVQEALMATGHAFQQLAASQRAETAYA
EALDRLLPRRQATRDLLDRLSRS

mRNA from alignment at C-australica_Contig_10300:308..826-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-australica_Contig_10300.1.1 ID=mRNA_C-australica_Contig_10300.1.1|Name=mRNA_C-australica_Contig_10300.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=519bp|location=Sequence derived from alignment at C-australica_Contig_10300:308..826- (Chrysoparadoxa australica CS_1217)
CTAGCATTCGTCTTTCTGGAACTCGGCCAGGGTGCCACCGCGCGCGGCCT
GTTCAAACGTATCCGTCTTGACGGCCCGTTCTCGGACAAGGCCCTGCTCG
GCCTCGGCTGGTCGGAACTGGCCCCCGACGGCGAACCACAGGACCTGCTG
CTGTTGCGGCGTATCCGCTGCCTCGAGGACCCCGCTCGCCTGCTGCCCGA
CTCGCTGCCGGTACTGCGCCGGATGCCGCGCGAATCCTGCGGCCGTCCGC
GCATGTTCCGCGACCGTGATGAGTTCCAGTGGGAAGACGGCGGCGAAACC
GAGGAAGAACGCTACCGCCGGGCGCTACGGCCATGGCTGGAACTCGGCGC
CCGCAATGCCGATGACGTCGCGGTGCAGGAAGCGCTGATGGCGACCGGCC
ACGCCTTCCAGCAGCTGGCGGCCAGTCAGCGGGCGGAAACCGCCTATGCC
GAAGCGCTGGACCGGCTCCTGCCCCGGCGCCAGGCCACCCGGGATCTGCT
GGACCGGCTGTCCAGGTCC

Coding sequence (CDS) from alignment at C-australica_Contig_10300:308..826-

>mRNA_C-australica_Contig_10300.1.1 ID=mRNA_C-australica_Contig_10300.1.1|Name=mRNA_C-australica_Contig_10300.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=519bp|location=Sequence derived from alignment at C-australica_Contig_10300:308..826- (Chrysoparadoxa australica CS_1217)
CTAGCATTCGTCTTTCTGGAACTCGGCCAGGGTGCCACCGCGCGCGGCCT
GTTCAAACGTATCCGTCTTGACGGCCCGTTCTCGGACAAGGCCCTGCTCG
GCCTCGGCTGGTCGGAACTGGCCCCCGACGGCGAACCACAGGACCTGCTG
CTGTTGCGGCGTATCCGCTGCCTCGAGGACCCCGCTCGCCTGCTGCCCGA
CTCGCTGCCGGTACTGCGCCGGATGCCGCGCGAATCCTGCGGCCGTCCGC
GCATGTTCCGCGACCGTGATGAGTTCCAGTGGGAAGACGGCGGCGAAACC
GAGGAAGAACGCTACCGCCGGGCGCTACGGCCATGGCTGGAACTCGGCGC
CCGCAATGCCGATGACGTCGCGGTGCAGGAAGCGCTGATGGCGACCGGCC
ACGCCTTCCAGCAGCTGGCGGCCAGTCAGCGGGCGGAAACCGCCTATGCC
GAAGCGCTGGACCGGCTCCTGCCCCGGCGCCAGGCCACCCGGGATCTGCT
GGACCGGCTGTCCAGGTCC