mRNA_C-australica_Contig_10298.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10298.1.1 vs. uniprot
Match: A0A222DYY2_9RHOB (Uncharacterized protein n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222DYY2_9RHOB) HSP 1 Score: 469 bits (1206), Expect = 5.220e-165 Identity = 248/254 (97.64%), Postives = 251/254 (98.82%), Query Frame = 1 Query: 1 MRSIFSFAAALALAGFSAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTISADSMEVTGRRYVPHLVRQIVHGAIGELVFFRDDADVVTAYKVDGMTEAWSVSDVDDMAYDAQTRVIAALDQHFKDDSVRLLQASTGEQLARVAMGKIKANLIALEPGAGKALILTGYTKTDAEQKQDEPEDLTKLQKADFKQMTDGYVSNVVTVDFVSGSFEMAETPYRVSYPKAVRVSDGKMMILSTNVESMMLGPDGTGAL 762 MRSIFSFAAALALAG SAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTISADSMEVTGR+YVPHLVRQIVHGAIGELVFFRDDADVVTAYKVDGM EAWSVSDVDDMAYDAQTRVIAALDQHFKDDSVRLLQASTGEQLARVAMGKIKANLIALEPGAGKALILTGYTKTDAEQKQDEPEDLTKLQKADFKQMTDGYVSNVVTVDFVSGSFEMAETPYRVSYPKAVRVSDGKMMIL TNV+SM+LGPDGTGAL Sbjct: 1 MRSIFSFAAALALAGLSAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTISADSMEVTGRQYVPHLVRQIVHGAIGELVFFRDDADVVTAYKVDGMAEAWSVSDVDDMAYDAQTRVIAALDQHFKDDSVRLLQASTGEQLARVAMGKIKANLIALEPGAGKALILTGYTKTDAEQKQDEPEDLTKLQKADFKQMTDGYVSNVVTVDFVSGSFEMAETPYRVSYPKAVRVSDGKMMILRTNVDSMLLGPDGTGAL 254
BLAST of mRNA_C-australica_Contig_10298.1.1 vs. uniprot
Match: A0A0B3SR94_9RHOB (Uncharacterized protein n=6 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3SR94_9RHOB) HSP 1 Score: 358 bits (920), Expect = 1.640e-121 Identity = 187/254 (73.62%), Postives = 217/254 (85.43%), Query Frame = 1 Query: 1 MRSIFSFAAALALAGFSAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTISADSMEVTGRRYVPHLVRQIVHGAIGELVFFRDDADVVTAYKVDGMTEAWSVSDVDDMAYDAQTRVIAALDQHFKDDSVRLLQASTGEQLARVAMGKIKANLIALEPGAGKALILTGYTKTDAEQKQDEPEDLTKLQKADFKQMTDGYVSNVVTVDFVSGSFEMAETPYRVSYPKAVRVSDGKMMILSTNVESMMLGPDGTGAL 762 MRS+ S AAA A++G +A A +QSIETISVSPDG+TVLVGG+NRTVY +SA+++EVT RRYV LVRQIVHG GELVFFRDDAD +TAYK M+ AW SDVDDMAYD + IA LDQH+KDDSV LL A+TGEQ+ARVAMGKIK+NLIAL PGA KALILT YTKTDAE+K DEP+DL+KLQKADFKQ+ DGYVSNVVTVDF +G+FEM+ETPYRVSYPKAVR++ KMM+L TN++SMML PDGTGAL Sbjct: 1 MRSLISLAAAAAVSGIAATCAPAQSIETISVSPDGQTVLVGGTNRTVYALSAETLEVTDRRYVSELVRQIVHGVDGELVFFRDDADTLTAYKTADMSFAWKASDVDDMAYDPRAGAIAVLDQHYKDDSVSLLFAATGEQMARVAMGKIKSNLIALAPGADKALILTNYTKTDAEEKADEPDDLSKLQKADFKQLHDGYVSNVVTVDFGTGAFEMSETPYRVSYPKAVRMAGDKMMVLRTNMDSMMLAPDGTGAL 254
BLAST of mRNA_C-australica_Contig_10298.1.1 vs. uniprot
Match: UPI001C95E85B (hypothetical protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C95E85B) HSP 1 Score: 350 bits (899), Expect = 2.540e-118 Identity = 181/254 (71.26%), Postives = 214/254 (84.25%), Query Frame = 1 Query: 1 MRSIFSFAAALALAGFSAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTISADSMEVTGRRYVPHLVRQIVHGAIGELVFFRDDADVVTAYKVDGMTEAWSVSDVDDMAYDAQTRVIAALDQHFKDDSVRLLQASTGEQLARVAMGKIKANLIALEPGAGKALILTGYTKTDAEQKQDEPEDLTKLQKADFKQMTDGYVSNVVTVDFVSGSFEMAETPYRVSYPKAVRVSDGKMMILSTNVESMMLGPDGTGAL 762 MR++ S A LA+AG +A +A +QSIETISVSPDGKT+LVGG+NRTVYT++A ++EVTGRRYVP LVRQIVHGA GE+VFFRDDAD +TAYK M+ AW SDVDDM YDA+ IAALDQH+KDDSV L A+TGEQ+ARVAMGKIKANLIAL PGA KA++LT Y K+DAE+KQDEP DLTKLQKADFKQ+ DGYVSNVV+VDF +GSFEMAETPYRVS+PK VR+ ++M+L TN +SMM DG+GAL Sbjct: 1 MRTLISLIAGLAVAGVAASSAGAQSIETISVSPDGKTLLVGGTNRTVYTVTAGTLEVTGRRYVPQLVRQIVHGADGEMVFFRDDADTLTAYKTADMSVAWKASDVDDMVYDARAGAIAALDQHYKDDSVTLFFAATGEQMARVAMGKIKANLIALAPGADKAMVLTNYDKSDAEEKQDEPADLTKLQKADFKQLHDGYVSNVVSVDFGTGSFEMAETPYRVSFPKDVRMMGDQLMVLRTNFDSMMFSADGSGAL 254
BLAST of mRNA_C-australica_Contig_10298.1.1 vs. uniprot
Match: A0A238J6E6_9RHOB (Uncharacterized protein n=1 Tax=Pelagimonas phthalicica TaxID=1037362 RepID=A0A238J6E6_9RHOB) HSP 1 Score: 254 bits (648), Expect = 2.440e-80 Identity = 133/246 (54.07%), Postives = 179/246 (72.76%), Query Frame = 1 Query: 34 ALAG---FSAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTISADSMEVTGRRYVPHLVRQIVHGAIGELVFFRDDADVVTAYKVDGMTEAWSVSDVDDMAYDAQTRVIAALDQHFKDDSVRLLQASTGEQLARVAMGKIKANLIALEPGAGKALILTGYTKTDAEQKQDEPEDLTKLQKADFKQMTDGYVSNVVTVDFVSGSFEMAETPYRVSYPKAVRVSDGKMMILSTNVESMMLGPDGTGAL 762 ALAG F+AGA Q+QSIE +SVSPDGKTVL+ G+NR VY++S ++MEVT RRYVP +VRQI+H G +V+ RD+ + AY M+EAW D D++ Y + +A LD+H+KDDS+RL+ A +G Q AR+A+GK+K ++ AL P ALILT +K+DAE K+DEP D+TKLQKADFKQ TDGYVS V+ VDF G F AE+ YRVS+P V + DGK++IL +N++S ++G DG+ L Sbjct: 7 ALAGLLLFAAGA-QAQSIEGLSVSPDGKTVLMSGTNRVVYSVSTETMEVTDRRYVPQMVRQIIHSDDGSMVYLRDNDKRLIAYNTADMSEAWRTEDADEVVYAPEQGTLAILDEHWKDDSIRLMAADSGSQTARIALGKMKTDMFALGPDGRSALILTQSSKSDAEVKKDEPADMTKLQKADFKQRTDGYVSQVIAVDFDLGEFTQAESHYRVSFPHDVNMVDGKLLILRSNLDSAIVGSDGSAEL 251
BLAST of mRNA_C-australica_Contig_10298.1.1 vs. uniprot
Match: A0A3M2EGZ1_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M2EGZ1_9PROT) HSP 1 Score: 85.1 bits (209), Expect = 1.440e-15 Identity = 65/244 (26.64%), Postives = 115/244 (47.13%), Query Frame = 1 Query: 34 ALAGFSAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTISADSMEVTGRRYVPHLVRQIVHGAIGELVFFRDDADVVTAYKVDGMTEAWSVSDVDDMAYD-AQTRVIAALDQHFKDDSVRLLQASTGEQLARVAMGKIKANLIALEPGAGKALILTGYTKTDAEQKQDEPEDLTKLQKADFKQMTDGYVSNVVTVDFVSGSFEMAETPYRVSYPKAVRVSDGKMMILSTNVESMMLGPDGTGAL 762 ALA +A + I ++SVSPDG+TVL NR VY + + V R ++ I H A G V R + A+ +G E W VS + + A +V+ A+ Q ++ + +L A++ E +A +G+++ +A+ P G+ +L K ++E++Q+ P L L + F Q D + +VT+D SG ++ Y + + + ++L+ + P G AL Sbjct: 13 ALAATAAADTPANGIGSLSVSPDGRTVLAAAENRVVYVLDGQDLSVRERIWIKVSPVWIRHVAGGRQVLVRGTQGELIAFDSEGFEELWRVSRTAAVDHARAADQVVFAVRQG-RNTIIGVLDAASTETVASFDLGEMRVREVAISPDGGRITVLGVDDKRESEERQNPPAGLADLAREQFAQEHDQRGARIVTIDVASGQITAVDSWYSGKTVRGMAFAGDDTIVLAHGRNVARISPAGEVAL 255 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10298.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10298.1.1 >prot_C-australica_Contig_10298.1.1 ID=prot_C-australica_Contig_10298.1.1|Name=mRNA_C-australica_Contig_10298.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=254bp MRSIFSFAAALALAGFSAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTIback to top mRNA from alignment at C-australica_Contig_10298:67..828+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10298.1.1 ID=mRNA_C-australica_Contig_10298.1.1|Name=mRNA_C-australica_Contig_10298.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=762bp|location=Sequence derived from alignment at C-australica_Contig_10298:67..828+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10298:67..828+ >mRNA_C-australica_Contig_10298.1.1 ID=mRNA_C-australica_Contig_10298.1.1|Name=mRNA_C-australica_Contig_10298.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=762bp|location=Sequence derived from alignment at C-australica_Contig_10298:67..828+ (Chrysoparadoxa australica CS_1217)back to top |