mRNA_C-australica_Contig_1029.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1029.2.1 vs. uniprot
Match: A0A835ZCY0_9STRA (40S ribosomal protein S25 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCY0_9STRA) HSP 1 Score: 153 bits (386), Expect = 2.390e-41 Identity = 81/101 (80.20%), Postives = 89/101 (88.12%), Query Frame = 1 Query: 670 SKEQKAAAAMAGGKGRKKKWSKQKNRDKMANEVLFKELTYNRLTTEVPKMKLITASALVERLKISGSLARSAIRELEEKGLIRVVSRHRAQLIYTRATNTD 972
SKEQKAAAAMAGGK RKKKWSK K RDK+ NEVLFKE TY R+ EVPKMKL+T SALVERLKI+GSLAR+AIRELEEKG+IR VS H AQL+YTRATNT+
Sbjct: 9 SKEQKAAAAMAGGKSRKKKWSKNKARDKILNEVLFKEPTYERMMNEVPKMKLVTTSALVERLKINGSLARAAIRELEEKGVIRRVSHHSAQLVYTRATNTE 109
BLAST of mRNA_C-australica_Contig_1029.2.1 vs. uniprot
Match: D8LTW6_ECTSI (40S ribosomal protein S25 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTW6_ECTSI) HSP 1 Score: 147 bits (371), Expect = 3.590e-39 Identity = 79/102 (77.45%), Postives = 87/102 (85.29%), Query Frame = 1 Query: 670 SKEQKAAAAMAGGKGRKKKWSKQKNRDKMANEVLFKELTYNRLTTEVPKMKLITASALVERLKISGSLARSAIRELEEKGLIRVVSRHRAQLIYTRATNTDE 975
SKEQK AAAMAGGKGRKKKWSK K R+K+AN+VLF E TY R EVPKMKLITAS LVERLK++GSLAR+AIRELEEKGLIR V H AQ+IYTRATN +E
Sbjct: 9 SKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTYTRCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKVDAHHAQVIYTRATNVEE 110
BLAST of mRNA_C-australica_Contig_1029.2.1 vs. uniprot
Match: W7TVF9_9STRA (40S ribosomal protein S25 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVF9_9STRA) HSP 1 Score: 131 bits (329), Expect = 4.110e-33 Identity = 73/103 (70.87%), Postives = 86/103 (83.50%), Query Frame = 1 Query: 670 SKEQKAAAAMAGGKGRKKKWSKQKNRDKMANEVLFKELTY-NRLTTEVPKMKLITASALVERLKISGSLARSAIRELEEKGLIRVVSRHRAQLIYTRATNTDE 975
+KEQK AAAMAGGK +KKKWSK K R+K+AN+VLF E Y NRL TE+PK KLIT SALVERLKI+GSLAR+A+REL+EKGLI+ VS H +Q+IYTRAT E
Sbjct: 9 TKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE 111
BLAST of mRNA_C-australica_Contig_1029.2.1 vs. uniprot
Match: A0A7S3Y488_HETAK (40S ribosomal protein S25 n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3Y488_HETAK) HSP 1 Score: 131 bits (330), Expect = 4.250e-33 Identity = 70/102 (68.63%), Postives = 84/102 (82.35%), Query Frame = 1 Query: 670 SKEQKAAAAMAGGKGRKKKWSKQKNRDKMANEVLFKELTYNRLTTEVPKMKLITASALVERLKISGSLARSAIRELEEKGLIRVVSRHRAQLIYTRATNTDE 975
SKEQK AAA+AGGK RKKKWSK K R+KMAN+VL+ E TY RL TE+PKMKLIT SALVERLK++G+LAR+++ EL EKGLI+ V+RH +Q IYTR T E
Sbjct: 21 SKEQKMAAALAGGKSRKKKWSKGKVREKMANKVLYDEDTYERLLTEIPKMKLITPSALVERLKVNGALARASLLELHEKGLIKEVARHGSQQIYTRTTGDAE 122
BLAST of mRNA_C-australica_Contig_1029.2.1 vs. uniprot
Match: F0YAB4_AURAN (40S ribosomal protein S25 n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YAB4_AURAN) HSP 1 Score: 128 bits (322), Expect = 3.870e-32 Identity = 69/101 (68.32%), Postives = 82/101 (81.19%), Query Frame = 1 Query: 670 SKEQKAAAAMAGGKGRKKKWSKQKNRDKMANEVLFKELTYNRLTTEVPKMKLITASALVERLKISGSLARSAIRELEEKGLIRVVSRHRAQLIYTRATNTD 972
SKE K AAAMAGGK +KKKWSK K R+KMAN+VLF E TY RL E+PKMKLIT SALVERLK++G+LAR+AI+EL+EKGLI+ VS H Q I+TR +D
Sbjct: 9 SKEAKMAAAMAGGKSKKKKWSKGKVREKMANKVLFDEDTYARLLAEIPKMKLITPSALVERLKVNGALARAAIKELQEKGLIKQVSYHHTQWIFTRDVGSD 109
BLAST of mRNA_C-australica_Contig_1029.2.1 vs. uniprot
Match: A0A7S2G994_9STRA (40S ribosomal protein S25 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G994_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.070e-31 Identity = 69/98 (70.41%), Postives = 82/98 (83.67%), Query Frame = 1 Query: 670 SKEQKAAAAMAGGKGRKKKWSKQKNRDKMANEVLFKELTYNRLTTEVPKMKLITASALVERLKISGSLARSAIRELEEKGLIRVVSRHRAQLIYTRAT 963
SKE K AAAMAGGKG+KKKWSK K R+K+AN+VLF+E Y RL TEVPKMKLIT SALVERLKI GSLAR+AI+ELE + +I+ +S H +Q +YTRAT
Sbjct: 9 SKEAKMAAAMAGGKGKKKKWSKGKVREKVANKVLFEEELYERLKTEVPKMKLITPSALVERLKIGGSLARAAIKELESEEMIKRLSYHSSQWVYTRAT 106
BLAST of mRNA_C-australica_Contig_1029.2.1 vs. uniprot
Match: A0A7S3PJ15_9STRA (40S ribosomal protein S25 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PJ15_9STRA) HSP 1 Score: 125 bits (314), Expect = 5.170e-31 Identity = 70/103 (67.96%), Postives = 82/103 (79.61%), Query Frame = 1 Query: 661 INQSKEQKAAAAMAGG-KGRKKKWSKQKNRDKMANEVLFKELTYNRLTTEVPKMKLITASALVERLKISGSLARSAIRELEEKGLIRVVSRHRAQLIYTRATN 966
+ ++KE KA AAMAGG KG+KKKWSK KNR+K N VLF + +Y RL T+V KMKLIT S +VERLK++GSLAR+AIRELE KGLIR V HR Q IYTRATN
Sbjct: 5 VQKTKEAKAKAAMAGGAKGKKKKWSKGKNREKALNLVLFDKPSYERLLTDVTKMKLITPSTIVERLKVTGSLARAAIRELEGKGLIREVLNHRKQRIYTRATN 107
BLAST of mRNA_C-australica_Contig_1029.2.1 vs. uniprot
Match: B8CCQ5_THAPS (40S ribosomal protein S25 n=2 Tax=Sar TaxID=2698737 RepID=B8CCQ5_THAPS) HSP 1 Score: 124 bits (312), Expect = 1.120e-30 Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 1 Query: 670 SKEQKAAAAMAGGKGRKKKWSKQKNRDKMANEVLFKELTYNRLTTEVPKMKLITASALVERLKISGSLARSAIRELEEKGLIRVVSRHRAQLIYTRATNTDE 975
SKEQK AAAMAGGKG+KKKWSK K RDK+ N+VLF + ++RL +EVPKMKLIT S++VE+LKISG LAR A+ +L E+G+IR VS RAQ IYTR+ N +E
Sbjct: 9 SKEQKMAAAMAGGKGKKKKWSKGKQRDKVDNKVLFTKEQHDRLNSEVPKMKLITVSSVVEKLKISGGLARRALNQLAEEGVIRPVSVSRAQRIYTRSINDEE 110
BLAST of mRNA_C-australica_Contig_1029.2.1 vs. uniprot
Match: A0A485LJ93_9STRA (40S ribosomal protein S25 n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A485LJ93_9STRA) HSP 1 Score: 123 bits (308), Expect = 3.910e-30 Identity = 65/102 (63.73%), Postives = 85/102 (83.33%), Query Frame = 1 Query: 670 SKEQKAAAAMAGGKGR-KKKWSKQKNRDKMANEVLFKELTYNRLTTEVPKMKLITASALVERLKISGSLARSAIRELEEKGLIRVVSRHRAQLIYTRATNTD 972
+KEQK AAA+AGG+G+ KKKWSK K R+K AN+VLF + TY R+ EVPKMKLITASA+VERLK++ +LAR+AI ELE+KG I+ V++HR Q+IYTR+ +D
Sbjct: 9 TKEQKMAAALAGGRGKGKKKWSKGKVREKTANKVLFDQETYERMCKEVPKMKLITASAVVERLKVNATLARAAILELEQKGEIKCVTKHRCQMIYTRSVGSD 110
BLAST of mRNA_C-australica_Contig_1029.2.1 vs. uniprot
Match: F0WED2_9STRA (40S ribosomal protein S25 n=2 Tax=Albugo TaxID=65356 RepID=F0WED2_9STRA) HSP 1 Score: 120 bits (301), Expect = 4.070e-29 Identity = 68/104 (65.38%), Postives = 85/104 (81.73%), Query Frame = 1 Query: 670 SKEQKAAAAMAGGKGR-KKKWSKQKNRDKMANEVLFKELTYNRLTTEVPKMKLITASALVERLKISGSLARSAIRELEEKGLIRVVSRHRAQLIYTRA-TNTDE 975
+KEQK AAAMAGG+G+ KKKWSK K R+K+AN+VL+ + TY+RL +EVPKMKLITASA+VERLK++ +LARS+IR+LE G I V H QLIYTRA TN +E
Sbjct: 9 TKEQKMAAAMAGGRGKGKKKWSKCKVREKVANKVLYDQETYDRLLSEVPKMKLITASAIVERLKVNATLARSSIRQLESDGTIARVLAHHTQLIYTRAATNAEE 112 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1029.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1029.2.1 >prot_C-australica_Contig_1029.2.1 ID=prot_C-australica_Contig_1029.2.1|Name=mRNA_C-australica_Contig_1029.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=94bp MAGGKGRKKKWSKQKNRDKMANEVLFKELTYNRLTTEVPKMKLITASALVback to top mRNA from alignment at C-australica_Contig_1029:1368..3582- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1029.2.1 ID=mRNA_C-australica_Contig_1029.2.1|Name=mRNA_C-australica_Contig_1029.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2215bp|location=Sequence derived from alignment at C-australica_Contig_1029:1368..3582- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1029:1368..3582- >mRNA_C-australica_Contig_1029.2.1 ID=mRNA_C-australica_Contig_1029.2.1|Name=mRNA_C-australica_Contig_1029.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=282bp|location=Sequence derived from alignment at C-australica_Contig_1029:1368..3582- (Chrysoparadoxa australica CS_1217)back to top |