mRNA_C-australica_Contig_1029.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1029.1.1 vs. uniprot
Match: A0A7S0J0I6_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J0I6_9EUKA) HSP 1 Score: 160 bits (406), Expect = 6.340e-44 Identity = 88/222 (39.64%), Postives = 133/222 (59.91%), Query Frame = 1 Query: 13 PISLQGSALALLLVFRTNSSYARFVEARGLWGTAVFRARDLGQQLSVWMAPKYYDPVLQSD-VKGIALMAVCRYLVAYGWCLKAHLRSGEHSDDVVEALFRGPEKKWILEQPNRPLALLHRVRQVIHSEEV-GLNIAQLD-AAEQAVTGLAQVVGGTERLMSTGIPPTYTRHTTRALVMWLAALPLALAPVTVHLIHLPFQPHSTTFTFLGILEIGVQIEQP 669 P+ LQG+A+ LLLVFRTN+SY R +AR LWG V R++ ++ ++ L+ D + CRY+ +GW LK+ LR+ E S+DV++A+ + +W+ Q +RP++++ R+R++IH E G A L E+A+ L QVVGG ERL ++ IPPT +RH R++ +W ALP L L + F +T + FLGI E+GVQ+EQP Sbjct: 140 PLQLQGTAIGLLLVFRTNNSYERLADARALWGRVVLLTREVASGVATYLQ-------LEEDGTPNASACEACRYMAIFGWVLKSRLRADEESNDVIDAVLSAGDARWLRSQRSRPISIISRLRRLIHEEYTRGALSAHLHFKLEEALFQLYQVVGGCERLFTSPIPPTMSRHVVRSMALWFFALPFVLLGTMSELSIVAFVA-ATAYIFLGIEELGVQVEQP 353
BLAST of mRNA_C-australica_Contig_1029.1.1 vs. uniprot
Match: A0A7S3WXR8_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WXR8_EMIHU) HSP 1 Score: 149 bits (377), Expect = 1.720e-39 Identity = 89/223 (39.91%), Postives = 128/223 (57.40%), Query Frame = 1 Query: 13 PISLQGSALALLLVFRTNSSYARFVEARGLWGTAVFRARDLGQQLSVWMAPKYYDPVLQSDVKGIA--LMAVCRYLVAYGWCLKAHLRSGEHSDDVVEALFRGPEKKWILEQPNRPLALLHRVRQVIHSE--EVGLNIAQLDAAEQAVTGLAQVVGGTERLMSTGIPPTYTRHTTRALVMWLAALPLALAPVTVHLIHLPFQPHSTTFTFLGILEIGVQIEQP 669 P+SL G AL LLLVFRTN++Y R EAR LWG A++ R++ Q ++ + + +++G A A CRYL A+ W L A L DD++ ALF E +W+ Q +RPL LL +R+ +H++ E L E+ V+ L V ERL S+ +PPT +RH R +V+WL LPL LA T+ + F T++ F+GI E+GVQ+EQP Sbjct: 168 PMSLFGQALGLLLVFRTNNTYQRLAEARTLWGRAIYLTREVAQGVATALLFDRRVASKEEEMEGAAEGAAASCRYLAAFSWELNAKLTGPTLPDDILRALFTAEEAEWMAAQRSRPLQLLGALRRALHAQWREGNLPTHVHRKLEENVSELNLVASSCERLFSSPVPPTMSRHVVRCMVLWLFGLPLVLAG-TMAPSAVGFWVFVTSYVFIGIEEVGVQVEQP 389
BLAST of mRNA_C-australica_Contig_1029.1.1 vs. uniprot
Match: A0A0M0JRS2_9EUKA (Duf21 domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JRS2_9EUKA) HSP 1 Score: 144 bits (362), Expect = 1.190e-36 Identity = 85/231 (36.80%), Postives = 135/231 (58.44%), Query Frame = 1 Query: 1 LPLAPISLQ--GSALALLLVFRTNSSYARFVEARGLWGTAVFRARDLGQQLSVWMAPKYYDPVLQSDVKGIALMAVCRYLVAYGWCLKAHLRSGEHSDDVVEALFRGPEKKWILEQPNRPLALLHRVRQVIHSEEV-GLNIAQLDAA-EQAVTGLAQVVGGTERLMSTGIPPTYTRHTTRALVMWLAALPLALA----PVTVHLIHLPFQPHSTTFTFLGILEIGVQIEQP 669 LP++P++LQ G+A+ L+L FR N++Y R EAR L G + R++ ++AP D ++ + RY+ +GW LKA LR GE ++DV+ A+ E W+L+Q + +A++ ++R++++++ G A L + E + L V+GG ERL ++ IPPT TRH R+L +WL A+PLAL P+ V F +T + FLGI E+GVQ+EQP Sbjct: 236 LPISPVALQLQGTAIGLVLAFRNNAAYERLAEARALMGKVITLGREIASGAITFLAPDEQDGYPTAEAYHLV-----RYMAVFGWVLKARLRDGEVAEDVLRAVLSDEEVGWLLKQRSPTVAIIGQIRRLLYTQYANGKLAAHLHSKLELNLLELYSVIGGIERLFTSPIPPTMTRHVVRSLCLWLLAMPLALVGSMPPLAV-----VFFTTATAYIFLGIEELGVQVEQP 456
BLAST of mRNA_C-australica_Contig_1029.1.1 vs. uniprot
Match: A0A7S0JJ17_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JJ17_9EUKA) HSP 1 Score: 140 bits (353), Expect = 2.260e-36 Identity = 91/230 (39.57%), Postives = 133/230 (57.83%), Query Frame = 1 Query: 13 PISLQGSALALLLVFRTNSSYARFVEARGLWGTAVFRARDLGQQLSVWMAPKYYDPVLQSDVKGIALMAVCRYLVAYGWCLKAHLRSGEHSDDV--VEALFRGPEKKWILEQPNRPLALLHRVRQVIHSEEVGLNIA-----QLDAAEQAVTGLAQVVGGTERLMSTGIPPTYTRHTTRALVMWLAALPLALA----PVTVHLIHLPFQPHSTTFTFLGILEIGVQIEQP 669 P+SL G+AL LLLVFRTN++Y R +EAR LW + +R+LGQ +S + + P ++ +G A CRYLVA+ W L+ L G ++D+ + AL E +WI Q +RPL LL +R+ +HS+ N+ +LD + V L +VG ERL S+ +PPT +RH R +++WL P LA P+TV + T++ F+GI EIGVQ+EQP Sbjct: 118 PMSLIGTALGLLLVFRTNNTYRRLMEARQLWSNVICLSRELGQGISTALLTDKHVPDQRAAREGAA--NACRYLVAFAWELRGKLTGGALTEDMRTLHALLPSEEAEWIGAQRSRPLQLLCALRRELHSQFRLQNLPTHLHRKLD---EDVRELDLIVGNCERLFSSPLPPTMSRHIVRCMLIWLFGFPFVLAGTMAPLTVAM-----WVFVTSYAFVGIDEIGVQVEQP 337
BLAST of mRNA_C-australica_Contig_1029.1.1 vs. uniprot
Match: A0A6V2M0V1_EMIHU (Hypothetical protein n=4 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2M0V1_EMIHU) HSP 1 Score: 137 bits (345), Expect = 8.330e-35 Identity = 86/222 (38.74%), Postives = 129/222 (58.11%), Query Frame = 1 Query: 10 APISLQGSALALLLVFRTNSSYARFVEARGLWGTAVFRARDLGQQLSVWMAPKYYDPVLQSDVKGIALMAVCRYLVAYGWCLKAHLRSGEHSDDVVEALFRGPEKKWILEQPNRPLALLHRVRQVIHSE-EVG-LNIAQLDAAEQAVTGLAQVVGGTERLMSTGIPPTYTRHTTRALVMWLAALPLALAPVTVHLIHLPFQPHSTTFTFLGILEIGVQIEQP 669 A + LQG+A+ LLLVFRT+++Y R EAR W ++ +R++ ++ V + +Y PV V RYL ++ W L+ LR E DD+++ L E W++ Q +RPLALL RVRQV+ E + G L+ Q A + V L+ VV ERL S+ IPP RH R+L++WL +P+ LA ++H + STT+ + GI E+G+Q+EQP Sbjct: 163 ATMQLQGAAIGLLLVFRTDNAYRRLEEARKDWSRILYLSREVVSRVLV--SCEY--PVT---------CEVARYLCSFAWSLRDMLRDAEDRDDILDVLLDAEEASWVVSQRSRPLALLGRVRQVLMRELDAGELSATQHYAIDMDVRELSSVVATCERLFSSPIPPNMARHGVRSLILWLFGIPIVLAG-SMHPALIALCVASTTYIYFGINELGIQVEQP 370
BLAST of mRNA_C-australica_Contig_1029.1.1 vs. uniprot
Match: A0A813J5E3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813J5E3_POLGL) HSP 1 Score: 132 bits (333), Expect = 1.850e-34 Identity = 98/231 (42.42%), Postives = 128/231 (55.41%), Query Frame = 1 Query: 7 LAPISLQGSALALLLVFRTNSSYARFVEARGLWGTAVFRARDLGQQLSVWMAPKYYDPVL-QSDVKGIALMAVCRYLVAYGWCLKAHL----RSGEHSDDVVEALFRGPEKKWILEQ--PNRPLALLHRVRQVI---HSEEVGLNIAQLDAAEQAVTGLAQVVGGTERLMSTGIPPTYTRHTTRALVMWLAALPLALAPVTVHLIHLPFQPHSTTFTFLGILEIGVQIEQP 669 +AP+SL G +LALLLVFRTN +Y R EAR WG V R R++ Q L Y D +L + + K +ALMA R+L YGW L+ L R ++V+ AL E KWIL RP +L R+R +I H + L L E+ + L+ V G ERL+S+ I PTYTRH+ R L++WL ALPLAL T L ST + LGI E+ +QIEQP Sbjct: 1 MAPLSLSGGSLALLLVFRTNQAYDRHREARQNWGALVLRTREIMQVLVAHSL--YRDGLLVEENDKDVALMA--RFLAVYGWVLRVRLTPLRRGLGEDEEVIRALLPEREAKWILASRVQARPGQVLMRLRALIAGLHRRQA-LGDMALHFQEEQLALLSVVGGCCERLLSSPIGPTYTRHSMRVLLLWLFALPLALD--TGSTAQLLISVVSTAYIMLGIDEMAIQIEQP 224
BLAST of mRNA_C-australica_Contig_1029.1.1 vs. uniprot
Match: A0A0M0K313_9EUKA (Membrane protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K313_9EUKA) HSP 1 Score: 135 bits (340), Expect = 4.140e-34 Identity = 91/233 (39.06%), Postives = 130/233 (55.79%), Query Frame = 1 Query: 13 PISLQGSALALLLVFRTNSSYARFVEARGLWGTAVFRARDLGQQLSVWMAPKYYDPVLQSDVKGIALMA-VCRYLVAYGWCLKAHL-------RSGEHSDDVVEALFRGPEKKWILEQPNRPLALLHRVRQVIHSEEVGLNI-AQLDAA-EQAVTGLAQVVGGTERLMSTGIPPTYTRHTTRALVMWLAALPLALA----PVTVHLIHLPFQPHSTTFTFLGILEIGVQIEQP 669 P L GSA+ LLLVFRTN++Y R EAR LWG AVF R++ Q + + +DP + + A CRYL A+ W L A L + +SD+V+ L E +W+ +Q +RPL LL +R+ ++ + N+ A L EQ + L VVGG ERL S+ +PPT +RH R+LV+W+A LP LA P+++ L + F+GI E+GVQ+EQP Sbjct: 158 PHGLIGSAIGLLLVFRTNNTYQRLSEARLLWGRAVFLCREIAQNAATALL---FDPDVPCPTEAKRAAADTCRYLGAWCWELNAKLTGPSSIRNTDVYSDNVLSILLPKAEAEWMSQQRSRPLVLLGALRRNLYRQFRSGNLPAHLHRKLEQNLEDLNLVVGGCERLFSSPVPPTMSRHVVRSLVLWIATLPFVLAGAMSPISIAL-----WVSLIVYIFVGIEEVGVQVEQP 382
BLAST of mRNA_C-australica_Contig_1029.1.1 vs. uniprot
Match: A0A7S0S3P6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S3P6_9CHLO) HSP 1 Score: 135 bits (340), Expect = 8.810e-34 Identity = 98/235 (41.70%), Postives = 131/235 (55.74%), Query Frame = 1 Query: 7 LAPISLQGSALALLLVFRTNSSYARFVEARGLWGTAVFRARDLGQQLSVWMAPKYYDPVLQSDVKGIALMAVCRYLVAYGWCLKAHLRSGE----------HSDD---VVEALFRGPEKKWILEQPNRPLALLHRVRQVIHSE-EVGLNIAQLDAAEQAVTGLAQVVGGTERLMSTGIPPTYTRHTTRALVMWLAALPLALAPVTVHLIHLPFQPHSTTFTFLGILEIGVQIEQP 669 L P +L G+AL+LLLVFRTNSSYARFVE R LWG V +RD + MA Y+ +++G A RY+ + LK+HLRSG DD VV+ L E +L Q NRP ++ R+ Q+ G+ + E ++ L V+GG +R++ T IP +YTRHT+R+LV+WLA LP+AL PV L LP F FLGI EIGV+IE+P Sbjct: 222 LVPHTLLGAALSLLLVFRTNSSYARFVEGRLLWGALVRHSRDWTR-----MAANYFP----GELRGRA----ARYVQVLAFVLKSHLRSGRTRATVADPSAFRDDPTIVVQELLPCSEADAVLTQTNRPFYVVCRMTQIARDACAAGIPRHISHSIEHTLSELMAVIGGCDRILGTPIPLSYTRHTSRSLVLWLATLPVALWPVAGWLT-LPTMA-VLAFIFLGIDEIGVEIEEP 441
BLAST of mRNA_C-australica_Contig_1029.1.1 vs. uniprot
Match: A0A813G1X3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G1X3_POLGL) HSP 1 Score: 133 bits (334), Expect = 3.260e-33 Identity = 98/233 (42.06%), Postives = 128/233 (54.94%), Query Frame = 1 Query: 1 LPLAPISLQGSALALLLVFRTNSSYARFVEARGLWGTAVFRARDLGQQLSVWMAPKYYDPVL-QSDVKGIALMAVCRYLVAYGWCLKAHL----RSGEHSDDVVEALFRGPEKKWILEQ--PNRPLALLHRVRQVI---HSEEVGLNIAQLDAAEQAVTGLAQVVGGTERLMSTGIPPTYTRHTTRALVMWLAALPLALAPVTVHLIHLPFQPHSTTFTFLGILEIGVQIEQP 669 LP+AP+SL G +LALLLVFRTN +Y R EAR WG V R R++ Q L Y D +L + + K +ALMA R+L YGW L+ L R ++ + L E KWIL RP +L R+R +I H + L L E+ + L+ V G ERL+S+ I PTYTRH+ R L++WL ALPLAL T L ST + LGI E+ +QIEQP Sbjct: 158 LPMAPLSLSGGSLALLLVFRTNQAYDRHREARQNWGALVLRTREIMQVLVAHSL--YRDGLLVEENDKDVALMA--RFLAVYGWVLRVRLTPLRRGLGEDEEAIRELLPEREAKWILASRVQARPGQVLMRLRALIAGLHRRQA-LGDMALHFQEEQLALLSVVGGCCERLLSSPIGPTYTRHSMRVLLLWLFALPLALD--TGSTAQLLISVVSTAYIMLGIDEMAIQIEQP 383
BLAST of mRNA_C-australica_Contig_1029.1.1 vs. uniprot
Match: A0A7S0S385_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S385_9CHLO) HSP 1 Score: 132 bits (331), Expect = 3.740e-33 Identity = 96/233 (41.20%), Postives = 127/233 (54.51%), Query Frame = 1 Query: 13 PISLQGSALALLLVFRTNSSYARFVEARGLWGTAVFRARDLGQQLSVWMAPKYYDPVLQSDVKGIALMAVCRYLVAYGWCLKAHLRSGE----------HSDD---VVEALFRGPEKKWILEQPNRPLALLHRVRQVIHSE-EVGLNIAQLDAAEQAVTGLAQVVGGTERLMSTGIPPTYTRHTTRALVMWLAALPLALAPVTVHLIHLPFQPHSTTFTFLGILEIGVQIEQP 669 P L AL+LLLVFRTNSSYARFVE R LWG V +RD + MA Y+ +++G A RY+ + LK+HLRSG DD VV+ L E +L Q NRP ++ R+ Q+ G+ + E ++ L V+GG +R++ T IP +YTRHT+R+LV+WLA LP+AL PV L LP F FLGI EIGV+IE+P Sbjct: 126 PFELTSFALSLLLVFRTNSSYARFVEGRLLWGALVRHSRDWTR-----MAANYFP----GELRGRA----ARYVQVLAFVLKSHLRSGRTRATVADPSAFRDDPTIVVQELLPCSEADAVLTQTNRPFYVVCRMTQIARDACAAGIPRHISHSIEHTLSELMAVIGGCDRILGTPIPLSYTRHTSRSLVLWLATLPVALWPVAGWLT-LPTMA-VLAFIFLGIDEIGVEIEEP 343 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1029.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1029.1.1 >prot_C-australica_Contig_1029.1.1 ID=prot_C-australica_Contig_1029.1.1|Name=mRNA_C-australica_Contig_1029.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=224bp LPLAPISLQGSALALLLVFRTNSSYARFVEARGLWGTAVFRARDLGQQLSback to top mRNA from alignment at C-australica_Contig_1029:307..1427+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1029.1.1 ID=mRNA_C-australica_Contig_1029.1.1|Name=mRNA_C-australica_Contig_1029.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1121bp|location=Sequence derived from alignment at C-australica_Contig_1029:307..1427+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1029:307..1427+ >mRNA_C-australica_Contig_1029.1.1 ID=mRNA_C-australica_Contig_1029.1.1|Name=mRNA_C-australica_Contig_1029.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=672bp|location=Sequence derived from alignment at C-australica_Contig_1029:307..1427+ (Chrysoparadoxa australica CS_1217)back to top |