mRNA_C-australica_Contig_1028.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1028.2.1 vs. uniprot
Match: A0A6H5L351_9PHAE (DNMT1-RFD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L351_9PHAE) HSP 1 Score: 152 bits (383), Expect = 4.450e-38 Identity = 87/229 (37.99%), Postives = 118/229 (51.53%), Query Frame = 1 Query: 1 DEFIDRGSFRLARYGTRSAAREDDSGAVATANKSSTWGCIWVPQRRTLRIKLTALEDWCIDYSIAGKPVLWIISKYAWYKVAGGSWWDKVQSAPHYASTFTPTERKFRLMSLVMRALTANPNLTLSQVARRADAGTSGELTIQDLVQHHSFIL-------------------GQLEGLV-------PFVVTTQAGATQEVYPPDSQFAIGLAEAGNDWESAGATATITP 609
DE++D SFRLA G+RS+A+ + A A K S C+ VP RRT+RI++ ++DWCIDYS PVLWIIS +AWYKVAG WWD V P YA F P+ + F L LV RAL ++P +L+ V RR TSG +D+V+ H + G L+G+ P G++ V D+ F LA G +WE+ G + P
Sbjct: 229 DEWMDWESFRLAPCGSRSSAKREGESASTAARKESLTRCVLVPARRTVRIRINCVDDWCIDYSDTNHPVLWIISGHAWYKVAGSGWWDFVAPHPIYAPVFEPSRKSFALTCLVARALQSSPTSSLAAVGRRVSQITSGVFETRDIVEEHEVVAATIAGMGALSTKKKPDNAEGMLDGVGEDGPGSWPGANGDNNGSSDSVDAKDTLFLKELATKGQEWEANGRSFVRRP 457
BLAST of mRNA_C-australica_Contig_1028.2.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI) HSP 1 Score: 151 bits (381), Expect = 8.360e-38 Identity = 73/159 (45.91%), Postives = 98/159 (61.64%), Query Frame = 1 Query: 1 DEFIDRGSFRLARYGTRSAAREDDSGAVATANKSSTWGCIWVPQRRTLRIKLTALEDWCIDYSIAGKPVLWIISKYAWYKVAGGSWWDKVQSAPHYASTFTPTERKFRLMSLVMRALTANPNLTLSQVARRADAGTSGELTIQDLVQHHSFILGQLEGL 477
DE++D SFRLA G+RS+A+ + A A K S C+ VP RRT+RI++ ++DWCIDYS PVLWIIS +AWYKVAG WWD V P YA F P+ + F L LV RAL ++P +L+ V RR TSG +D+V+ H + + G+
Sbjct: 108 DEWMDWESFRLAPCGSRSSAKREGESASTAARKESLTRCVLVPARRTVRIRINCVDDWCIDYSDTNHPVLWIISGHAWYKVAGSGWWDFVAPHPIYAPVFEPSRKSFALTCLVARALQSSPTSSLAAVGRRVSQITSGVFETRDIVEEHEVVAATIAGM 266
BLAST of mRNA_C-australica_Contig_1028.2.1 vs. uniprot
Match: A0A835ZDW7_9STRA (Bromo domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW7_9STRA) HSP 1 Score: 144 bits (364), Expect = 1.560e-35 Identity = 70/161 (43.48%), Postives = 106/161 (65.84%), Query Frame = 1 Query: 1 DEFIDRGSFRLARYGTRSAAREDDSGAVATANKSSTWGCIWVPQRRTLRIKLTALEDWCIDYSIAGKPVLWIISKYAWYKVAGGSWWDKVQSAPHYASTFTPTERKFRLMSLVMRALTANPNLTLSQVARR--ADAGTSGELTIQDLVQHHSFILGQLEGL 477
DE I R SFRLA YGTRS A D GA + K +W C+WVP R+T R+++ A+ DWC+D+S+ +P+LW+IS+ AWY V G SWWD+V+ P YA P+ +F+L S ++R + PN++L+ + +R A +G G + ++DL+++ +I QLE L
Sbjct: 422 DEDIPRDSFRLAPYGTRSVA--DGGGAPSHLKKDKSWLCMWVPGRQTARVRIGAIVDWCVDFSVPARPLLWLISEAAWYLVGGESWWDQVRPHPTYARVCAPSNYRFQLASALVRGMQPQPNMSLNLIGKRLQASSGMWGFM-VRDLIENFPYIHQQLESL 579
BLAST of mRNA_C-australica_Contig_1028.2.1 vs. uniprot
Match: A0A6G0WE00_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WE00_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 4.010e-8 Identity = 41/117 (35.04%), Postives = 59/117 (50.43%), Query Frame = 1 Query: 145 RIKLTALEDWCIDYSIAGKPVLWIISKYAWYKVAG--GSWWDKVQSAPHYASTFTPTERKFRLMSLVMRALTANPNL----TLSQVARRADAGTSGELTIQDLVQHHSFILGQLEGL 477
RI L + DWC+DYS G P LW+I+K+AWYK+AG PH+ E F + ++ L NP L TL QV ++ G LT + +++++ FI QL L
Sbjct: 506 RIWLPEISDWCLDYS-DGDPTLWVITKHAWYKIAGPISGMLPHWSYRPHFTKPRLMFEACFHIAFVLREWLPKNPGLSYRATLQQVIEQSILGRY-PLTTKFMIENYKFIASQLGSL 620
BLAST of mRNA_C-australica_Contig_1028.2.1 vs. uniprot
Match: A0A485LQJ0_9STRA (Aste57867_24503 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQJ0_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 5.730e-7 Identity = 44/121 (36.36%), Postives = 61/121 (50.41%), Query Frame = 1 Query: 145 RIKLTALEDWCIDYSIAGKPVLWIISKYAWYKVAGGSWWDKVQSAPH--YASTFTPT----ERKFRLMSLVMRALTANPNL----TLSQVARRADAGTSGELTIQDLVQHHSFILGQLEGL 477
R+ L + DWC+DYS G P LW+I+K AWYK+AG PH Y S FT E F + ++ L NP L TL QV ++ G LT + +++++ FI QL L
Sbjct: 521 RVWLPEITDWCLDYS-DGDPTLWVITKNAWYKIAG----PISGMLPHWSYRSQFTKPRLMFEACFHIAFVLREWLPKNPGLAYRSTLQQVIEQSILGRY-PLTTKFMIENYKFIASQLGNL 635 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1028.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1028.2.1 >prot_C-australica_Contig_1028.2.1 ID=prot_C-australica_Contig_1028.2.1|Name=mRNA_C-australica_Contig_1028.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=261bp DEFIDRGSFRLARYGTRSAAREDDSGAVATANKSSTWGCIWVPQRRTLRIback to top mRNA from alignment at C-australica_Contig_1028:2833..4876+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1028.2.1 ID=mRNA_C-australica_Contig_1028.2.1|Name=mRNA_C-australica_Contig_1028.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2044bp|location=Sequence derived from alignment at C-australica_Contig_1028:2833..4876+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1028:2833..4876+ >mRNA_C-australica_Contig_1028.2.1 ID=mRNA_C-australica_Contig_1028.2.1|Name=mRNA_C-australica_Contig_1028.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=783bp|location=Sequence derived from alignment at C-australica_Contig_1028:2833..4876+ (Chrysoparadoxa australica CS_1217)back to top |