mRNA_C-australica_Contig_10265.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10265.1.1 vs. uniprot
Match: A0A2D4SCP8_9GAMM (Uroporphyrinogen III synthase n=1 Tax=Salinisphaeraceae bacterium TaxID=2026789 RepID=A0A2D4SCP8_9GAMM) HSP 1 Score: 266 bits (681), Expect = 9.500e-87 Identity = 143/217 (65.90%), Postives = 164/217 (75.58%), Query Frame = 1 Query: 1 FAEGGGDDVIRLTGEGLRRLLGFSERAGDDLRDRFVARLGEVRTLTRGPKPARALRDLDLRPTLTAAAPTTDGVIETLTAEDLAGRRVGVQLYGTDPNDKLVGWLRGAGAEVRPVAPYIYADDAEDEQVAALIDTLADGGVDAIAFTSSPQVRRLFQVAGRRECEDRLRAGLAATTVAAVGPIIRDALTERGVRVDLMPESSYFMKPLVNALARQLG 651 F G DD+I LTGEGLRRLL + RA L D FV+RL +VR LTRGPKPARALR++ LR L AA PTTDGVI TL++ L GR VGVQLYG+DPN KLV +L G GA+V V+PYIYAD+ EDEQV ALID LA G +DAIAFTSSPQVRRLF VA +R+ + +L LA TVAAVGP++ DAL ER VRVDLMPESSYFMKPLV L + G Sbjct: 58 FNAGRCDDLILLTGEGLRRLLSAARRADTALHDGFVSRLSQVRKLTRGPKPARALREIGLRSDLAAAEPTTDGVITTLSSLSLEGREVGVQLYGSDPNHKLVDYLTGQGAQVHTVSPYIYADETEDEQVGALIDRLARGDIDAIAFTSSPQVRRLFSVARKRDQQAQLLRALADMTVAAVGPLVADALREREVRVDLMPESSYFMKPLVRKLVERFG 274
BLAST of mRNA_C-australica_Contig_10265.1.1 vs. uniprot
Match: A0A1H1LVB0_9GAMM (Uroporphyrinogen-III synthase n=1 Tax=Halopseudomonas xinjiangensis TaxID=487184 RepID=A0A1H1LVB0_9GAMM) HSP 1 Score: 258 bits (660), Expect = 1.660e-83 Identity = 135/214 (63.08%), Postives = 160/214 (74.77%), Query Frame = 1 Query: 1 FAEGGGDDVIRLTGEGLRRLLGFSERAGDDLRDRFVARLGEVRTLTRGPKPARALRDLDLRPTLTAAAPTTDGVIETLTAEDLAGRRVGVQLYGTDPNDKLVGWLRGAGAEVRPVAPYIYADDAEDEQVAALIDTLADGGVDAIAFTSSPQVRRLFQVAGRRECEDRLRAGLAATTVAAVGPIIRDALTERGVRVDLMPESSYFMKPLVNALAR 642 F E GDD++ LTGEGLRRL+ +ERAG DL RF+ RLGEVR +TRGPKP ALR L L+ + A PTT+GVI+TL EDL GRR+ VQLYG++PND L+G+L AGAEV V+PYIYAD EDEQV LI L + VDAIAFTS+ QVRR+FQ+A R E E+ L LAA VAAVGP++ + LTERGV VDLMPESSYFMKPLV L + Sbjct: 59 FVENPGDDLVLLTGEGLRRLVTSAERAGGDLAQRFIGRLGEVRKITRGPKPGAALRKLGLKADVVAVEPTTEGVIKTLEQEDLKGRRIAVQLYGSEPNDLLMGFLSRAGAEVTSVSPYIYADHIEDEQVEGLITALINHEVDAIAFTSATQVRRMFQIARRVETEEALHRALAAIKVAAVGPVVAEELTERGVGVDLMPESSYFMKPLVRELVK 272
BLAST of mRNA_C-australica_Contig_10265.1.1 vs. uniprot
Match: A0A1V0B0E4_9PSED (HEM4 domain-containing protein n=3 Tax=Pseudomonas TaxID=286 RepID=A0A1V0B0E4_9PSED) HSP 1 Score: 255 bits (652), Expect = 2.230e-82 Identity = 132/218 (60.55%), Postives = 161/218 (73.85%), Query Frame = 1 Query: 1 FAEGGGDDVIRLTGEGLRRLLGFSERAGDDLRDRFVARLGEVRTLTRGPKPARALRDLDLRPTLTAAAPTTDGVIETLTAEDLAGRRVGVQLYGTDPNDKLVGWLRGAGAEVRPVAPYIYADDAEDEQVAALIDTLADGGVDAIAFTSSPQVRRLFQVAGRRECEDRLRAGLAATTVAAVGPIIRDALTERGVRVDLMPESSYFMKPLVNALARQLGS 654 F E DD+I LTGEGLRRLL +ERAG L + FV +LGEVR +TRGPKP ALR + L+P + A PTT+GVI+TL AE+L GRRV VQLYGT+PN LV +L+ AGA++ VAPY+YADD ED QV AL+ L + VDAIAFTS+ QVRRL Q+A R +CE L LA TVAAVGP++ D L ERG+RVDLMP+ S+FMKPLV L + LG+ Sbjct: 59 FIEQPVDDLILLTGEGLRRLLASAERAGGGLCEAFVVKLGEVRKITRGPKPGAALRKIGLKPDVLAQEPTTEGVIQTLRAENLQGRRVAVQLYGTEPNVPLVTFLQEAGAQISTVAPYVYADDVEDAQVEALVRALIEPAVDAIAFTSATQVRRLLQIARRMQCESELLVALAGLTVAAVGPVVADELRERGIRVDLMPQESFFMKPLVRELVKALGA 276
BLAST of mRNA_C-australica_Contig_10265.1.1 vs. uniprot
Match: A0A2P6JSC2_9PSED (Uroporphyrinogen III synthase n=2 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A2P6JSC2_9PSED) HSP 1 Score: 251 bits (640), Expect = 1.470e-80 Identity = 129/212 (60.85%), Postives = 157/212 (74.06%), Query Frame = 1 Query: 19 DDVIRLTGEGLRRLLGFSERAGDDLRDRFVARLGEVRTLTRGPKPARALRDLDLRPTLTAAAPTTDGVIETLTAEDLAGRRVGVQLYGTDPNDKLVGWLRGAGAEVRPVAPYIYADDAEDEQVAALIDTLADGGVDAIAFTSSPQVRRLFQVAGRRECEDRLRAGLAATTVAAVGPIIRDALTERGVRVDLMPESSYFMKPLVNALARQLGS 654 DD I LTGEG+RRLL +ERAG LR+ F+ARL +VR LTRGPKP ALR + L+ + A PTT+GVI TL +EDL GRR+ VQLYGTDPN L+ +L+GAGA V PVAPY+YADD ED +V +LI LA G VDAIAFTS+ QVRRLFQ+ R + RL L T+AAVGP++ + L ERG++VDLMP SSYFMKPLV L R+ G+ Sbjct: 64 DDFIALTGEGIRRLLAAAERAGGSLREDFIARLAQVRKLTRGPKPGAALRSIGLKADVVALEPTTEGVIRTLQSEDLYGRRIAVQLYGTDPNLPLMEFLQGAGAHVAPVAPYVYADDVEDARVESLISELASGRVDAIAFTSATQVRRLFQIGRRSVGQQRLGEILGGLTIAAVGPVVAEELRERGLQVDLMPPSSYFMKPLVRELVRKFGA 275
BLAST of mRNA_C-australica_Contig_10265.1.1 vs. uniprot
Match: UPI00166D8CBA (uroporphyrinogen-III synthase n=1 Tax=Halopseudomonas pertucinogena TaxID=86175 RepID=UPI00166D8CBA) HSP 1 Score: 250 bits (639), Expect = 2.020e-80 Identity = 129/211 (61.14%), Postives = 155/211 (73.46%), Query Frame = 1 Query: 19 DDVIRLTGEGLRRLLGFSERAGDDLRDRFVARLGEVRTLTRGPKPARALRDLDLRPTLTAAAPTTDGVIETLTAEDLAGRRVGVQLYGTDPNDKLVGWLRGAGAEVRPVAPYIYADDAEDEQVAALIDTLADGGVDAIAFTSSPQVRRLFQVAGRRECEDRLRAGLAATTVAAVGPIIRDALTERGVRVDLMPESSYFMKPLVNALARQLG 651 DD+I LTGEG+RRLLG +ERAG +R+ F+ARL +VR +TRGPKP ALR + L+ L A APTT GVI+TL EDL GRR+ VQLYGTDPN L+ +LR AGA PV PYIYADD ED +V ALID LA G +DAIAFTS+ QVRRLFQ+ R E L L T+AAVGP++ D L +RG+RVDLMPE S+FMKPLV + R+ G Sbjct: 64 DDLIALTGEGIRRLLGAAERAGGSVREDFIARLAQVRKITRGPKPGAALRSIGLKADLVAVAPTTQGVIDTLQPEDLKGRRIAVQLYGTDPNPLLMEFLREAGAVAMPVWPYIYADDVEDRRVVALIDELASGTLDAIAFTSATQVRRLFQIGKRHVGEPGLVTILNGLTIAAVGPVVADELRDRGLRVDLMPEQSFFMKPLVREMVRRFG 274
BLAST of mRNA_C-australica_Contig_10265.1.1 vs. uniprot
Match: UPI001CC1B7F4 (uroporphyrinogen-III synthase n=1 Tax=Pseudomonas nanhaiensis TaxID=2830842 RepID=UPI001CC1B7F4) HSP 1 Score: 249 bits (636), Expect = 7.200e-80 Identity = 130/214 (60.75%), Postives = 158/214 (73.83%), Query Frame = 1 Query: 1 FAEGGGDDVIRLTGEGLRRLLGFSERAGDDLRDRFVARLGEVRTLTRGPKPARALRDLDLRPTLTAAAPTTDGVIETLTAEDLAGRRVGVQLYGTDPNDKLVGWLRGAGAEVRPVAPYIYADDAEDEQVAALIDTLADGGVDAIAFTSSPQVRRLFQVAGRRECEDRLRAGLAATTVAAVGPIIRDALTERGVRVDLMPESSYFMKPLVNALAR 642 F GDD+I LTGEGLRRL+G +ERAG DL +RF ARLGEVR +TRGPKP ALR L L+ + A PTT+GVI+TL E+L GR+V VQLYGT+PN+ L+G+L AGA V V+PY+YAD EDEQV LI+ + VDAIAFTS+ QVRRLFQ+A + E++L L A VAAVGP++ + L ERGV VDLMPESSYFMKPLV L + Sbjct: 59 FVANPGDDLILLTGEGLRRLMGTAERAGGDLAERFTARLGEVRKITRGPKPGAALRKLGLKADVVAVEPTTEGVIKTLEQENLQGRQVAVQLYGTEPNELLIGYLTRAGARVTQVSPYVYADHIEDEQVDGLINAIIGREVDAIAFTSATQVRRLFQIARQGAREEKLLKALTAIKVAAVGPVVAEELNERGVGVDLMPESSYFMKPLVRELVK 272
BLAST of mRNA_C-australica_Contig_10265.1.1 vs. uniprot
Match: A0A2D9Q0A5_9GAMM (Uroporphyrinogen III synthase HEM4 n=9 Tax=Pseudomonadales TaxID=72274 RepID=A0A2D9Q0A5_9GAMM) HSP 1 Score: 249 bits (635), Expect = 8.980e-80 Identity = 135/212 (63.68%), Postives = 154/212 (72.64%), Query Frame = 1 Query: 19 DDVIRLTGEGLRRLLGFSERAGDDLRDRFVARLGEVRTLTRGPKPARALRDLDLRPTLTAAAPTTDGVIETLTAEDLAGRRVGVQLYGTDPNDKLVGWLRGAGAEVRPVAPYIYADDAEDEQVAALIDTLADGGVDAIAFTSSPQVRRLFQVAGRREC-EDRLRAGLAATTVAAVGPIIRDALTERGVRVDLMPESSYFMKPLVNALARQLG 651 D VI LTGEGLRR+L +ER GD LRD FVA LG + LTRGPKP ALR + LRP A APTT+GVIETL E+L G R+GVQLYGTDPN +LV +L GAGA V+ VAPYIYADD ED QV LID L VDAIAFTS+ QVRRL Q+A RR+ E L + L VAAVGP++ D L ERG+ VDLMPESS+FMKPLV L + LG Sbjct: 67 DQVILLTGEGLRRMLALAERQGDGLRDAFVAALGPIPKLTRGPKPGAALRKVGLRPDRVAVAPTTEGVIETLKGENLQGVRIGVQLYGTDPNTRLVDFLTGAGARVKTVAPYIYADDVEDAQVDRLIDALLAIEVDAIAFTSATQVRRLLQIAKRRDDGEAMLLSALERIKVAAVGPVVADELRERGINVDLMPESSFFMKPLVRELVKVLG 278
BLAST of mRNA_C-australica_Contig_10265.1.1 vs. uniprot
Match: A0A7V7GUU9_9PSED (Uroporphyrinogen-III synthase n=2 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A7V7GUU9_9PSED) HSP 1 Score: 249 bits (635), Expect = 1.120e-79 Identity = 133/212 (62.74%), Postives = 158/212 (74.53%), Query Frame = 1 Query: 19 DDVIRLTGEGLRRLLGFSERAGDDLRDRFVARLGEVRTLTRGPKPARALRDLDLRPTLTAAAPTTDGVIETLTAEDLAGRRVGVQLYGTDPNDKLVGWLRGAGAEVRPVAPYIYADDAEDEQVAALIDTLADGGVDAIAFTSSPQVRRLFQVAGRREC-EDRLRAGLAATTVAAVGPIIRDALTERGVRVDLMPESSYFMKPLVNALARQLG 651 DD+I LTGEGLRRLL +ERAG LRD F+ +LG+VR LTRGPKP ALR + L+ L A PTT+GVI+TL A DL+GRR+ VQLYGT+PN LV +L AGA V VAPY+YADD ED +V L+ + G +DAIAFTS+ QVRRLFQ+ GRR+C E L A LA VAAVGPI+ D L ERGV+VDLMPESS+FMKPLV L + LG Sbjct: 65 DDLILLTGEGLRRLLAAAERAGGSLRDDFITQLGKVRKLTRGPKPGTALRQIGLKADLVAVEPTTEGVIKTLEAGDLSGRRIAVQLYGTEPNRLLVDFLAHAGAHVSTVAPYVYADDVEDSRVEELVTAILAGQLDAIAFTSATQVRRLFQI-GRRQCGEPALIAALAKLKVAAVGPIVADELRERGVQVDLMPESSFFMKPLVRELVKSLG 275
BLAST of mRNA_C-australica_Contig_10265.1.1 vs. uniprot
Match: UPI00199D8D56 (Uroporphyrinogen III methyltransferase n=2 Tax=Halopseudomonas salina TaxID=1323744 RepID=UPI00199D8D56) HSP 1 Score: 245 bits (625), Expect = 3.560e-78 Identity = 131/212 (61.79%), Postives = 156/212 (73.58%), Query Frame = 1 Query: 19 DDVIRLTGEGLRRLLGFSERAGDDLRDRFVARLGEVRTLTRGPKPARALRDLDLRPTLTAAAPTTDGVIETLTAEDLAGRRVGVQLYGTDPNDKLVGWLRGAGAEVRPVAPYIYADDAEDEQVAALIDTLADGGVDAIAFTSSPQVRRLFQVAGRREC-EDRLRAGLAATTVAAVGPIIRDALTERGVRVDLMPESSYFMKPLVNALARQLG 651 DD+I LTGEGLRRLLG +ERAG LR+ F+ARLG+VR LTRGPKP ALR + L+ L A PTT+GVI TL E+L GRRV VQLYGT+PN L+ +LR AGA VAPYIYADD ED +V L+ + DG +DA+AFTS+ QVRRLFQ+ GRR+C E L GL VAAVGP++ + L R VRVDLMPESS+FMKPLV L + LG Sbjct: 69 DDLILLTGEGLRRLLGTAERAGGSLREDFIARLGQVRKLTRGPKPGTALRSVGLKADLVALEPTTEGVIRTLQQENLQGRRVAVQLYGTEPNLPLIDFLREAGAIASSVAPYIYADDVEDARVEELVAAILDGQLDAVAFTSATQVRRLFQI-GRRQCGEQALINGLRQLKVAAVGPVVAEELRNRDVRVDLMPESSFFMKPLVRELVKSLG 279
BLAST of mRNA_C-australica_Contig_10265.1.1 vs. uniprot
Match: A0A1H1QYB6_9GAMM (Uroporphyrinogen-III synthase n=1 Tax=Halopseudomonas sabulinigri TaxID=472181 RepID=A0A1H1QYB6_9GAMM) HSP 1 Score: 243 bits (621), Expect = 1.530e-77 Identity = 129/213 (60.56%), Postives = 158/213 (74.18%), Query Frame = 1 Query: 19 DDVIRLTGEGLRRLLGFSERAGDDLRDRFVARLGEVRTLTRGPKPARALRDLDLRPTLTAAAPTTDGVIETLTAEDLAGRRVGVQLYGTDPNDKLVGWLRGAGAEVRPVAPYIYADDAEDEQVAALIDTLADGGVDAIAFTSSPQVRRLFQVAGRRE-CEDRLRAGLAATTVAAVGPIIRDALTERGVRVDLMPESSYFMKPLVNALARQLGS 654 D +I LTGEGLRR++ +ER G LRD FVA L + LTRGPKP ALR L L+ A APTT+GVI+TL E+L G+R+GVQLYG+DPN +L+ +L+GAGAEV V+PYIYADD ED QV LID L VDAIAFTS+ QVRRLFQ+A RRE E +L + L+ TVAAVGP++ D L GV+V+LMPESS+FMKPLV L R+LG+ Sbjct: 65 DQLILLTGEGLRRMVSLAEREGGSLRDDFVAALAPISKLTRGPKPGAALRKLGLKADRVAVAPTTEGVIDTLKGENLEGQRIGVQLYGSDPNVRLIEFLQGAGAEVSTVSPYIYADDVEDTQVVQLIDALLAAEVDAIAFTSATQVRRLFQIARRREEGEPQLLSALSRLTVAAVGPVVGDELVAYGVQVNLMPESSFFMKPLVRELVRELGN 277 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10265.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10265.1.1 >prot_C-australica_Contig_10265.1.1 ID=prot_C-australica_Contig_10265.1.1|Name=mRNA_C-australica_Contig_10265.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=221bp FAEGGGDDVIRLTGEGLRRLLGFSERAGDDLRDRFVARLGEVRTLTRGPKback to top mRNA from alignment at C-australica_Contig_10265:166..828- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10265.1.1 ID=mRNA_C-australica_Contig_10265.1.1|Name=mRNA_C-australica_Contig_10265.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=663bp|location=Sequence derived from alignment at C-australica_Contig_10265:166..828- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10265:166..828- >mRNA_C-australica_Contig_10265.1.1 ID=mRNA_C-australica_Contig_10265.1.1|Name=mRNA_C-australica_Contig_10265.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=663bp|location=Sequence derived from alignment at C-australica_Contig_10265:166..828- (Chrysoparadoxa australica CS_1217)back to top |